RNA–Protein interactions for RNA: ENST00000461159.6

HDAC9-219, Transcript of histone deacetylase 9, humanhuman

TSL 2

Gene HDAC9, Length 2,557 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-219ENST00000461159 GAPVD1Q14C86 1478 aa12.92□□□□□ -0.34
HDAC9-219ENST00000461159 WDR97A6NE52 1622 aa12.88□□□□□ -0.35
HDAC9-219ENST00000461159 FBLN2P98095 1184 aa12.86□□□□□ -0.35
HDAC9-219ENST00000461159 IFT140Q96RY7 1462 aa12.86□□□□□ -0.35
HDAC9-219ENST00000461159 ERICH3Q5RHP9 1530 aa12.85□□□□□ -0.35
HDAC9-219ENST00000461159 ABCA5Q8WWZ7 1642 aa12.84□□□□□ -0.35
HDAC9-219ENST00000461159 P3H3Q8IVL6 736 aa12.84□□□□□ -0.35
HDAC9-219ENST00000461159 CLIP1P30622 1438 aa12.82□□□□□ -0.36
HDAC9-219ENST00000461159 EIF4G3O43432 1585 aaKnown RBP12.79□□□□□ -0.36
HDAC9-219ENST00000461159 GRIN2BQ13224 1484 aa12.78□□□□□ -0.36
HDAC9-219ENST00000461159 SNAPC4Q5SXM2 1469 aa12.77□□□□□ -0.36
HDAC9-219ENST00000461159 PBRM1Q86U86 1689 aa12.77□□□□□ -0.37
HDAC9-219ENST00000461159 CHMP7Q8WUX9 453 aaPredicted RBP12.76□□□□□ -0.37
HDAC9-219ENST00000461159 CUL7Q14999 1698 aa12.74□□□□□ -0.37
HDAC9-219ENST00000461159 FHAD1B1AJZ9 1412 aa12.73□□□□□ -0.37
HDAC9-219ENST00000461159 ARAP1Q96P48 1450 aa12.72□□□□□ -0.37
HDAC9-219ENST00000461159 ARHGAP35Q9NRY4 1499 aa12.71□□□□□ -0.37
HDAC9-219ENST00000461159 ATP1B4Q9UN42 357 aaPredicted RBP12.71□□□□□ -0.37
HDAC9-219ENST00000461159 ADAMTS12P58397 1594 aa12.7□□□□□ -0.38
HDAC9-219ENST00000461159 VPS8Q8N3P4 1428 aa12.68□□□□□ -0.38
HDAC9-219ENST00000461159 FHOD3Q2V2M9 1422 aa12.66□□□□□ -0.38
HDAC9-219ENST00000461159 ANP32EQ9BTT0 268 aa12.66□□□□□ -0.38
HDAC9-219ENST00000461159 ACIN1Q9UKV3 1341 aaKnown RBP12.65□□□□□ -0.38
HDAC9-219ENST00000461159 GRIN2AQ12879 1464 aa12.65□□□□□ -0.38
HDAC9-219ENST00000461159 MAGI1Q96QZ7 1491 aaPredicted RBP12.64□□□□□ -0.39
HDAC9-219ENST00000461159 SYNJ2O15056 1496 aa12.63□□□□□ -0.39
HDAC9-219ENST00000461159 CTTNBP2Q8WZ74 1663 aa12.63□□□□□ -0.39
HDAC9-219ENST00000461159 ARID3CA6NKF2 412 aa12.63□□□□□ -0.39
HDAC9-219ENST00000461159 UBE2Q2Q8WVN8 375 aa12.6□□□□□ -0.39
HDAC9-219ENST00000461159 KANK4Q5T7N3 995 aaPredicted RBP12.6□□□□□ -0.39
HDAC9-219ENST00000461159 CEP170Q5SW79 1584 aa12.58□□□□□ -0.4
HDAC9-219ENST00000461159 JPH4Q96JJ6 628 aa12.57□□□□□ -0.4
HDAC9-219ENST00000461159 IQGAP2Q13576 1575 aa12.57□□□□□ -0.4
HDAC9-219ENST00000461159 AEBP2Q6ZN18 517 aaPredicted RBP12.56□□□□□ -0.4
HDAC9-219ENST00000461159 KIAA0586Q9BVV6 1533 aa12.55□□□□□ -0.4
HDAC9-219ENST00000461159 CCER1Q8TC90 406 aaPredicted RBP12.55□□□□□ -0.4
HDAC9-219ENST00000461159 CHD1O14646 1710 aa12.54□□□□□ -0.4
HDAC9-219ENST00000461159 NUP160Q12769 1436 aa12.52□□□□□ -0.41
HDAC9-219ENST00000461159 SAMD9Q5K651 1589 aa12.51□□□□□ -0.41
HDAC9-219ENST00000461159 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.5□□□□□ -0.41
HDAC9-219ENST00000461159 GTF3C3Q9Y5Q9 886 aa12.5□□□□□ -0.41
HDAC9-219ENST00000461159 EFCAB5A4FU69 1503 aa12.5□□□□□ -0.41
HDAC9-219ENST00000461159 PCF11O94913 1555 aaKnown RBP12.5□□□□□ -0.41
HDAC9-219ENST00000461159 DISP1Q96F81 1524 aa12.49□□□□□ -0.41
HDAC9-219ENST00000461159 PLEKHG5O94827 1062 aa12.48□□□□□ -0.41
HDAC9-219ENST00000461159 NEUROD1Q13562 356 aa12.47□□□□□ -0.41
HDAC9-219ENST00000461159 HNRNPUL2Q1KMD3 747 aaKnown RBP12.47□□□□□ -0.41
HDAC9-219ENST00000461159 FMN1Q68DA7 1419 aa12.46□□□□□ -0.41
HDAC9-219ENST00000461159 UGGT2Q9NYU1 1516 aa12.46□□□□□ -0.41
HDAC9-219ENST00000461159 DIEXFQ68CQ4 756 aaKnown RBP12.46□□□□□ -0.42
HDAC9-219ENST00000461159 PRG4Q92954 1404 aaPredicted RBP12.46□□□□□ -0.42
HDAC9-219ENST00000461159 KIAA0556O60303 1618 aa12.44□□□□□ -0.42
HDAC9-219ENST00000461159 CASKIN1Q8WXD9 1431 aa12.44□□□□□ -0.42
HDAC9-219ENST00000461159 TIAM1Q13009 1591 aa12.43□□□□□ -0.42
HDAC9-219ENST00000461159 LRRIQ1Q96JM4 1722 aa12.43□□□□□ -0.42
HDAC9-219ENST00000461159 ERCC6L2Q5T890 1561 aa12.42□□□□□ -0.42
HDAC9-219ENST00000461159 PLB1Q6P1J6 1458 aa12.42□□□□□ -0.42
HDAC9-219ENST00000461159 CARMIL2Q6F5E8 1435 aa12.41□□□□□ -0.42
HDAC9-219ENST00000461159 ITGAEP38570 1179 aa12.41□□□□□ -0.42
HDAC9-219ENST00000461159 FYCO1Q9BQS8 1478 aa12.41□□□□□ -0.42
HDAC9-219ENST00000461159 NCBP3Q53F19 620 aaKnown RBP12.4□□□□□ -0.42
HDAC9-219ENST00000461159 OSCARQ8IYS5 282 aa12.4□□□□□ -0.42
HDAC9-219ENST00000461159 LRRC9Q6ZRR7 1453 aa12.4□□□□□ -0.43
HDAC9-219ENST00000461159 MAP3K1Q13233 1512 aa12.39□□□□□ -0.43
HDAC9-219ENST00000461159 CDK13Q14004 1512 aaKnown RBP12.39□□□□□ -0.43
HDAC9-219ENST00000461159 MTUS2Q5JR59 1369 aa12.37□□□□□ -0.43
HDAC9-219ENST00000461159 PODXL2Q9NZ53 605 aa12.37□□□□□ -0.43
HDAC9-219ENST00000461159 CFAP43Q8NDM7 1665 aa12.37□□□□□ -0.43
HDAC9-219ENST00000461159 PTPRGP23470 1445 aa12.36□□□□□ -0.43
HDAC9-219ENST00000461159 PHLDB1Q86UU1 1377 aa12.36□□□□□ -0.43
HDAC9-219ENST00000461159 MAGI3Q5TCQ9 1506 aa12.34□□□□□ -0.43
HDAC9-219ENST00000461159 EPRSP07814 1512 aaKnown RBP12.34□□□□□ -0.43
HDAC9-219ENST00000461159 NUP153P49790 1475 aaKnown RBP12.34□□□□□ -0.43
HDAC9-219ENST00000461159 ANO8Q9HCE9 1232 aaPredicted RBP12.34□□□□□ -0.43
HDAC9-219ENST00000461159 FAM50AQ14320 339 aaKnown RBP12.33□□□□□ -0.43
HDAC9-219ENST00000461159 CLASP1Q7Z460 1538 aa12.33□□□□□ -0.44
HDAC9-219ENST00000461159 RAPGEF6Q8TEU7 1601 aa12.31□□□□□ -0.44
HDAC9-219ENST00000461159 HECW1Q76N89 1606 aa12.3□□□□□ -0.44
HDAC9-219ENST00000461159 ZNF316A6NFI3 1004 aaPredicted RBP12.3□□□□□ -0.44
HDAC9-219ENST00000461159 RRBP1Q9P2E9 1410 aaKnown RBP12.3□□□□□ -0.44
HDAC9-219ENST00000461159 SHROOM2Q13796 1616 aa12.29□□□□□ -0.44
HDAC9-219ENST00000461159 CCNB3Q8WWL7 1395 aa12.29□□□□□ -0.44
HDAC9-219ENST00000461159 PKNOX2Q96KN3 472 aa12.26□□□□□ -0.45
HDAC9-219ENST00000461159 NCOA2Q15596 1464 aa12.26□□□□□ -0.45
HDAC9-219ENST00000461159 CCDC18Q5T9S5 1454 aa12.26□□□□□ -0.45
HDAC9-219ENST00000461159 KCNH8Q96L42 1107 aa12.25□□□□□ -0.45
HDAC9-219ENST00000461159 ATP10BO94823 1461 aa12.25□□□□□ -0.45
HDAC9-219ENST00000461159 CDK11AQ9UQ88 783 aaPredicted RBP12.25□□□□□ -0.45
HDAC9-219ENST00000461159 UACAQ9BZF9 1416 aa12.25□□□□□ -0.45
HDAC9-219ENST00000461159 PLEKHD1A6NEE1 506 aa12.25□□□□□ -0.45
HDAC9-219ENST00000461159 ABCA8O94911 1581 aa12.24□□□□□ -0.45
HDAC9-219ENST00000461159 ARXQ96QS3 562 aa12.24□□□□□ -0.45
HDAC9-219ENST00000461159 ZNF777Q9ULD5 760 aaPredicted RBP12.23□□□□□ -0.45
HDAC9-219ENST00000461159 ZNF644Q9H582 1327 aaPredicted RBP12.22□□□□□ -0.45
HDAC9-219ENST00000461159 CYB5RLQ6IPT4 315 aa12.22□□□□□ -0.45
HDAC9-219ENST00000461159 EHBP1L1Q8N3D4 1523 aa12.21□□□□□ -0.45
HDAC9-219ENST00000461159 FGD6Q6ZV73 1430 aa12.2□□□□□ -0.46
HDAC9-219ENST00000461159 CHIC2Q9UKJ5 165 aa12.2□□□□□ -0.46
HDAC9-219ENST00000461159 SUPT6HQ7KZ85 1726 aaKnown RBP12.19□□□□□ -0.46
HDAC9-219ENST00000461159 ARHGEF11O15085 1522 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms