RNA–Protein interactions for RNA: ENST00000461055.2

NEDD9-206, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 3

Gene NEDD9, Length 592 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-206ENST00000461055 MAGI1Q96QZ7 1491 aaPredicted RBP17.31■□□□□ 0.36
NEDD9-206ENST00000461055 SYNJ2O15056 1496 aa17.31■□□□□ 0.36
NEDD9-206ENST00000461055 GAPVD1Q14C86 1478 aa17.3■□□□□ 0.36
NEDD9-206ENST00000461055 CARMIL1Q5VZK9 1371 aa17.29■□□□□ 0.36
NEDD9-206ENST00000461055 TRIM26Q12899 539 aaPredicted RBP17.28■□□□□ 0.36
NEDD9-206ENST00000461055 CLIP1P30622 1438 aa17.27■□□□□ 0.35
NEDD9-206ENST00000461055 WDR97A6NE52 1622 aa17.25■□□□□ 0.35
NEDD9-206ENST00000461055 CUL7Q14999 1698 aa17.24■□□□□ 0.35
NEDD9-206ENST00000461055 ERCC6L2Q5T890 1561 aa17.23■□□□□ 0.35
NEDD9-206ENST00000461055 PBRM1Q86U86 1689 aa17.21■□□□□ 0.35
NEDD9-206ENST00000461055 ABCA5Q8WWZ7 1642 aa17.2■□□□□ 0.34
NEDD9-206ENST00000461055 VPS8Q8N3P4 1428 aa17.15■□□□□ 0.34
NEDD9-206ENST00000461055 PCGF6Q9BYE7 350 aa17.15■□□□□ 0.34
NEDD9-206ENST00000461055 GRIN2AQ12879 1464 aa17.13■□□□□ 0.33
NEDD9-206ENST00000461055 CEP170Q5SW79 1584 aa17.11■□□□□ 0.33
NEDD9-206ENST00000461055 NUP160Q12769 1436 aa17.09■□□□□ 0.33
NEDD9-206ENST00000461055 APLP2Q06481 763 aa17.08■□□□□ 0.32
NEDD9-206ENST00000461055 FHAD1B1AJZ9 1412 aa17.06■□□□□ 0.32
NEDD9-206ENST00000461055 ADAMTS12P58397 1594 aa17.06■□□□□ 0.32
NEDD9-206ENST00000461055 JPH4Q96JJ6 628 aa17.04■□□□□ 0.32
NEDD9-206ENST00000461055 ARHGAP35Q9NRY4 1499 aa17.02■□□□□ 0.32
NEDD9-206ENST00000461055 EFCAB5A4FU69 1503 aa17.01■□□□□ 0.31
NEDD9-206ENST00000461055 PRG4Q92954 1404 aaPredicted RBP17.01■□□□□ 0.31
NEDD9-206ENST00000461055 CTTNBP2Q8WZ74 1663 aa16.98■□□□□ 0.31
NEDD9-206ENST00000461055 SHROOM2Q13796 1616 aa16.97■□□□□ 0.31
NEDD9-206ENST00000461055 RANGAP1P46060 587 aaPredicted RBP16.97■□□□□ 0.31
NEDD9-206ENST00000461055 FAM69CQ0P6D2 419 aa16.94■□□□□ 0.3
NEDD9-206ENST00000461055 MAP3K1Q13233 1512 aa16.93■□□□□ 0.3
NEDD9-206ENST00000461055 KIF13AQ9H1H9 1805 aa16.89■□□□□ 0.29
NEDD9-206ENST00000461055 TTBK1Q5TCY1 1321 aaPredicted RBP16.89■□□□□ 0.29
NEDD9-206ENST00000461055 FMN1Q68DA7 1419 aa16.88■□□□□ 0.29
NEDD9-206ENST00000461055 NPM1P06748 294 aaKnown RBP eCLIP16.87■□□□□ 0.29
NEDD9-206ENST00000461055 PPARGC1BQ86YN6 1023 aaKnown RBP16.87■□□□□ 0.29
NEDD9-206ENST00000461055 KIAA0586Q9BVV6 1533 aa16.85■□□□□ 0.29
NEDD9-206ENST00000461055 SAMD9Q5K651 1589 aa16.85■□□□□ 0.29
NEDD9-206ENST00000461055 HRCP23327 699 aa16.83■□□□□ 0.28
NEDD9-206ENST00000461055 IQGAP2Q13576 1575 aa16.83■□□□□ 0.28
NEDD9-206ENST00000461055 FYCO1Q9BQS8 1478 aa16.82■□□□□ 0.28
NEDD9-206ENST00000461055 CASKIN1Q8WXD9 1431 aa16.82■□□□□ 0.28
NEDD9-206ENST00000461055 ABCC10Q5T3U5 1492 aa16.81■□□□□ 0.28
NEDD9-206ENST00000461055 UGGT2Q9NYU1 1516 aa16.8■□□□□ 0.28
NEDD9-206ENST00000461055 FHOD3Q2V2M9 1422 aa16.79■□□□□ 0.28
NEDD9-206ENST00000461055 ADCY10Q96PN6 1610 aa16.78■□□□□ 0.28
NEDD9-206ENST00000461055 KDM4FA0A1W2PPD8 638 aa16.78■□□□□ 0.28
NEDD9-206ENST00000461055 ZEB1P37275 1124 aaPredicted RBP16.78■□□□□ 0.28
NEDD9-206ENST00000461055 TIAM1Q13009 1591 aa16.76■□□□□ 0.27
NEDD9-206ENST00000461055 P3H3Q8IVL6 736 aa16.75■□□□□ 0.27
NEDD9-206ENST00000461055 DIP2BQ9P265 1576 aa16.72■□□□□ 0.27
NEDD9-206ENST00000461055 TSPOAP1O95153 1857 aa16.71■□□□□ 0.27
NEDD9-206ENST00000461055 PTPRGP23470 1445 aa16.71■□□□□ 0.27
NEDD9-206ENST00000461055 MAPKBP1O60336 1514 aa16.71■□□□□ 0.27
NEDD9-206ENST00000461055 KANK4Q5T7N3 995 aaPredicted RBP16.71■□□□□ 0.27
NEDD9-206ENST00000461055 LRRC9Q6ZRR7 1453 aa16.71■□□□□ 0.27
NEDD9-206ENST00000461055 PCF11O94913 1555 aaKnown RBP16.71■□□□□ 0.27
NEDD9-206ENST00000461055 CFAP43Q8NDM7 1665 aa16.69■□□□□ 0.26
NEDD9-206ENST00000461055 CARMIL2Q6F5E8 1435 aa16.67■□□□□ 0.26
NEDD9-206ENST00000461055 RRBP1Q9P2E9 1410 aaKnown RBP16.67■□□□□ 0.26
NEDD9-206ENST00000461055 CCDC18Q5T9S5 1454 aa16.67■□□□□ 0.26
NEDD9-206ENST00000461055 ATP1B4Q9UN42 357 aaPredicted RBP16.64■□□□□ 0.25
NEDD9-206ENST00000461055 KDM6BO15054 1643 aa16.63■□□□□ 0.25
NEDD9-206ENST00000461055 DISP1Q96F81 1524 aa16.63■□□□□ 0.25
NEDD9-206ENST00000461055 KIAA0556O60303 1618 aa16.63■□□□□ 0.25
NEDD9-206ENST00000461055 HECW1Q76N89 1606 aa16.62■□□□□ 0.25
NEDD9-206ENST00000461055 CCNB3Q8WWL7 1395 aa16.61■□□□□ 0.25
NEDD9-206ENST00000461055 ASXL2Q76L83 1435 aa16.61■□□□□ 0.25
NEDD9-206ENST00000461055 MTUS2Q5JR59 1369 aa16.58■□□□□ 0.24
NEDD9-206ENST00000461055 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.58■□□□□ 0.24
NEDD9-206ENST00000461055 ABCC2Q92887 1545 aa16.58■□□□□ 0.24
NEDD9-206ENST00000461055 COL17A1Q9UMD9 1497 aaPredicted RBP16.57■□□□□ 0.24
NEDD9-206ENST00000461055 EHBP1L1Q8N3D4 1523 aa16.55■□□□□ 0.24
NEDD9-206ENST00000461055 UACAQ9BZF9 1416 aa16.54■□□□□ 0.24
NEDD9-206ENST00000461055 CDK11AQ9UQ88 783 aaPredicted RBP16.54■□□□□ 0.24
NEDD9-206ENST00000461055 EPRSP07814 1512 aaKnown RBP16.54■□□□□ 0.24
NEDD9-206ENST00000461055 CCER1Q8TC90 406 aaPredicted RBP16.52■□□□□ 0.24
NEDD9-206ENST00000461055 PLB1Q6P1J6 1458 aa16.52■□□□□ 0.23
NEDD9-206ENST00000461055 PPRC1Q5VV67 1664 aaKnown RBP16.52■□□□□ 0.23
NEDD9-206ENST00000461055 HNRNPUL2Q1KMD3 747 aaKnown RBP16.51■□□□□ 0.23
NEDD9-206ENST00000461055 RAPGEF6Q8TEU7 1601 aa16.5■□□□□ 0.23
NEDD9-206ENST00000461055 PHLDB1Q86UU1 1377 aa16.5■□□□□ 0.23
NEDD9-206ENST00000461055 UHRF1BP1LA0JNW5 1464 aa16.49■□□□□ 0.23
NEDD9-206ENST00000461055 SUPT6HQ7KZ85 1726 aaKnown RBP16.49■□□□□ 0.23
NEDD9-206ENST00000461055 ILDR1Q86SU0 546 aaPredicted RBP16.49■□□□□ 0.23
NEDD9-206ENST00000461055 KCNH8Q96L42 1107 aa16.47■□□□□ 0.23
NEDD9-206ENST00000461055 GLI2P10070 1586 aa16.47■□□□□ 0.23
NEDD9-206ENST00000461055 LRRIQ1Q96JM4 1722 aa16.46■□□□□ 0.23
NEDD9-206ENST00000461055 KDM5BQ9UGL1 1544 aa16.45■□□□□ 0.22
NEDD9-206ENST00000461055 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.45■□□□□ 0.22
NEDD9-206ENST00000461055 ADGRL1O94910 1474 aa16.45■□□□□ 0.22
NEDD9-206ENST00000461055 NUP153P49790 1475 aaKnown RBP16.45■□□□□ 0.22
NEDD9-206ENST00000461055 NCOA2Q15596 1464 aa16.45■□□□□ 0.22
NEDD9-206ENST00000461055 MYOM3Q5VTT5 1437 aa16.44■□□□□ 0.22
NEDD9-206ENST00000461055 FGD6Q6ZV73 1430 aa16.44■□□□□ 0.22
NEDD9-206ENST00000461055 CLSPNQ9HAW4 1339 aa16.44■□□□□ 0.22
NEDD9-206ENST00000461055 ARID3CA6NKF2 412 aa16.43■□□□□ 0.22
NEDD9-206ENST00000461055 MIA2Q96PC5 1412 aa16.42■□□□□ 0.22
NEDD9-206ENST00000461055 ABCA8O94911 1581 aa16.41■□□□□ 0.22
NEDD9-206ENST00000461055 ZCCHC11Q5TAX3 1644 aaKnown RBP16.41■□□□□ 0.22
NEDD9-206ENST00000461055 FAM50AQ14320 339 aaKnown RBP16.39■□□□□ 0.21
NEDD9-206ENST00000461055 CDK13Q14004 1512 aaKnown RBP16.39■□□□□ 0.21
NEDD9-206ENST00000461055 MAP3K4Q9Y6R4 1608 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms