RNA–Protein interactions for RNA: ENST00000460657.1

CPNE6-202, Transcript of copine 6, humanhuman

TSL 2

Gene CPNE6, Length 4,540 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE6-202ENST00000460657 RAB3GAP2Q9H2M9 1393 aa16.56■□□□□ 0.24
CPNE6-202ENST00000460657 DHX57Q6P158 1386 aaKnown RBP16.55■□□□□ 0.24
CPNE6-202ENST00000460657 KIF21BO75037 1637 aa16.55■□□□□ 0.24
CPNE6-202ENST00000460657 EIF4G2P78344 907 aaKnown RBP eCLIP16.55■□□□□ 0.24
CPNE6-202ENST00000460657 DAXXQ9UER7 740 aaPredicted RBP16.53■□□□□ 0.24
CPNE6-202ENST00000460657 FAM9BQ8IZU0 186 aa16.52■□□□□ 0.24
CPNE6-202ENST00000460657 SUPT16HQ9Y5B9 1047 aaKnown RBP16.51■□□□□ 0.23
CPNE6-202ENST00000460657 ARHGAP35Q9NRY4 1499 aa16.51■□□□□ 0.23
CPNE6-202ENST00000460657 CADPSQ9ULU8 1353 aa16.51■□□□□ 0.23
CPNE6-202ENST00000460657 SYNJ1O43426 1573 aa16.51■□□□□ 0.23
CPNE6-202ENST00000460657 MRS2Q9HD23 443 aa16.48■□□□□ 0.23
CPNE6-202ENST00000460657 RTL5Q5HYW3 569 aaPredicted RBP16.46■□□□□ 0.23
CPNE6-202ENST00000460657 SLC4A1APQ9BWU0 796 aaKnown RBP16.46■□□□□ 0.23
CPNE6-202ENST00000460657 FMN1Q68DA7 1419 aa16.43■□□□□ 0.22
CPNE6-202ENST00000460657 NCAPD3P42695 1498 aa16.42■□□□□ 0.22
CPNE6-202ENST00000460657 CCER2I3L3R5 266 aa16.42■□□□□ 0.22
CPNE6-202ENST00000460657 ERICH3Q5RHP9 1530 aa16.41■□□□□ 0.22
CPNE6-202ENST00000460657 TSPY4P0CV99 314 aa16.4■□□□□ 0.22
CPNE6-202ENST00000460657 TSPY10P0CW01 314 aa16.4■□□□□ 0.22
CPNE6-202ENST00000460657 CHMP7Q8WUX9 453 aaPredicted RBP16.4■□□□□ 0.22
CPNE6-202ENST00000460657 FHOD3Q2V2M9 1422 aa16.38■□□□□ 0.21
CPNE6-202ENST00000460657 IGF1RP08069 1367 aa16.38■□□□□ 0.21
CPNE6-202ENST00000460657 PPP1R15AO75807 674 aaPredicted RBP16.37■□□□□ 0.21
CPNE6-202ENST00000460657 TMC1Q8TDI8 760 aa16.37■□□□□ 0.21
CPNE6-202ENST00000460657 IRX6P78412 446 aaPredicted RBP16.37■□□□□ 0.21
CPNE6-202ENST00000460657 TOP2BQ02880 1626 aa16.35■□□□□ 0.21
CPNE6-202ENST00000460657 EIF4G1Q04637 1599 aaKnown RBP16.35■□□□□ 0.21
CPNE6-202ENST00000460657 PRXQ9BXM0 1461 aa16.35■□□□□ 0.21
CPNE6-202ENST00000460657 CFDP1Q9UEE9 299 aaPredicted RBP16.34■□□□□ 0.21
CPNE6-202ENST00000460657 TDRD9Q8NDG6 1382 aaKnown RBP16.34■□□□□ 0.21
CPNE6-202ENST00000460657 ANP32AP39687 249 aaKnown RBP16.33■□□□□ 0.21
CPNE6-202ENST00000460657 ARAP1Q96P48 1450 aa16.33■□□□□ 0.2
CPNE6-202ENST00000460657 KDM2AQ9Y2K7 1162 aa16.31■□□□□ 0.2
CPNE6-202ENST00000460657 FGD5Q6ZNL6 1462 aa16.3■□□□□ 0.2
CPNE6-202ENST00000460657 PLEKHD1A6NEE1 506 aa16.3■□□□□ 0.2
CPNE6-202ENST00000460657 FANCD2Q9BXW9 1451 aa16.3■□□□□ 0.2
CPNE6-202ENST00000460657 RRBP1Q9P2E9 1410 aaKnown RBP16.3■□□□□ 0.2
CPNE6-202ENST00000460657 BICRAQ9NZM4 1560 aa16.3■□□□□ 0.2
CPNE6-202ENST00000460657 PDS5BQ9NTI5 1447 aa16.29■□□□□ 0.2
CPNE6-202ENST00000460657 CCDC136Q96JN2 1154 aa16.29■□□□□ 0.2
CPNE6-202ENST00000460657 CFTRP13569 1480 aa16.28■□□□□ 0.2
CPNE6-202ENST00000460657 HSPA5P11021 654 aaKnown RBP16.26■□□□□ 0.19
CPNE6-202ENST00000460657 PEG3Q9GZU2 1588 aa16.25■□□□□ 0.19
CPNE6-202ENST00000460657 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.25■□□□□ 0.19
CPNE6-202ENST00000460657 ANP32EQ9BTT0 268 aa16.24■□□□□ 0.19
CPNE6-202ENST00000460657 HMGXB3Q12766 1538 aa16.23■□□□□ 0.19
CPNE6-202ENST00000460657 LRRC9Q6ZRR7 1453 aa16.23■□□□□ 0.19
CPNE6-202ENST00000460657 CUX1P39880 1505 aa16.23■□□□□ 0.19
CPNE6-202ENST00000460657 PHLDB1Q86UU1 1377 aa16.22■□□□□ 0.19
CPNE6-202ENST00000460657 SALL2Q9Y467 1007 aaPredicted RBP16.22■□□□□ 0.19
CPNE6-202ENST00000460657 MPHOSPH9Q99550 1183 aa16.21■□□□□ 0.19
CPNE6-202ENST00000460657 KCNH8Q96L42 1107 aa16.19■□□□□ 0.18
CPNE6-202ENST00000460657 PPP4R2Q9NY27 417 aa16.19■□□□□ 0.18
CPNE6-202ENST00000460657 CARD11Q9BXL7 1154 aa16.19■□□□□ 0.18
CPNE6-202ENST00000460657 NPM2Q86SE8 214 aaKnown RBP16.17■□□□□ 0.18
CPNE6-202ENST00000460657 CCDC18Q5T9S5 1454 aa16.16■□□□□ 0.18
CPNE6-202ENST00000460657 FOXD1Q16676 465 aa16.16■□□□□ 0.18
CPNE6-202ENST00000460657 RAD54L2Q9Y4B4 1467 aa16.16■□□□□ 0.18
CPNE6-202ENST00000460657 TSHZ2Q9NRE2 1034 aa16.15■□□□□ 0.18
CPNE6-202ENST00000460657 UNC13AQ9UPW8 1703 aa16.15■□□□□ 0.18
CPNE6-202ENST00000460657 CANXP27824 592 aaKnown RBP16.15■□□□□ 0.18
CPNE6-202ENST00000460657 FGD6Q6ZV73 1430 aa16.14■□□□□ 0.17
CPNE6-202ENST00000460657 L3MBTL2Q969R5 705 aa16.13■□□□□ 0.17
CPNE6-202ENST00000460657 CASKIN1Q8WXD9 1431 aa16.12■□□□□ 0.17
CPNE6-202ENST00000460657 RGL3Q3MIN7 710 aa16.11■□□□□ 0.17
CPNE6-202ENST00000460657 WDR43Q15061 677 aaKnown RBP eCLIP16.09■□□□□ 0.17
CPNE6-202ENST00000460657 ZBTB47Q9UFB7 747 aaPredicted RBP16.09■□□□□ 0.17
CPNE6-202ENST00000460657 ERICH6BQ5W0A0 696 aa16.09■□□□□ 0.17
CPNE6-202ENST00000460657 RBM19Q9Y4C8 960 aaKnown RBP16.09■□□□□ 0.17
CPNE6-202ENST00000460657 TIAM1Q13009 1591 aa16.09■□□□□ 0.17
CPNE6-202ENST00000460657 FYCO1Q9BQS8 1478 aa16.08■□□□□ 0.17
CPNE6-202ENST00000460657 PKD2Q13563 968 aa16.08■□□□□ 0.16
CPNE6-202ENST00000460657 ERCC6Q03468 1493 aa16.08■□□□□ 0.16
CPNE6-202ENST00000460657 GAPVD1Q14C86 1478 aa16.08■□□□□ 0.16
CPNE6-202ENST00000460657 UACAQ9BZF9 1416 aa16.07■□□□□ 0.16
CPNE6-202ENST00000460657 MYOM3Q5VTT5 1437 aa16.07■□□□□ 0.16
CPNE6-202ENST00000460657 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.06■□□□□ 0.16
CPNE6-202ENST00000460657 SENP3-EIF4A1A0A087X0R7 540 aa16.05■□□□□ 0.16
CPNE6-202ENST00000460657 B4GALNT3Q6L9W6 998 aa16.05■□□□□ 0.16
CPNE6-202ENST00000460657 CARMIL2Q6F5E8 1435 aa16.04■□□□□ 0.16
CPNE6-202ENST00000460657 DCAF11Q8TEB1 546 aa16.04■□□□□ 0.16
CPNE6-202ENST00000460657 BIVM-ERCC5R4GMW8 1640 aa16.04■□□□□ 0.16
CPNE6-202ENST00000460657 EFCAB5A4FU69 1503 aa16.04■□□□□ 0.16
CPNE6-202ENST00000460657 CHGAP10645 457 aaKnown RBP16.03■□□□□ 0.16
CPNE6-202ENST00000460657 ANKRD30AQ9BXX3 1397 aa16.02■□□□□ 0.16
CPNE6-202ENST00000460657 NBR1Q14596 966 aa16.02■□□□□ 0.15
CPNE6-202ENST00000460657 NCOA2Q15596 1464 aa16■□□□□ 0.15
CPNE6-202ENST00000460657 NUP155O75694 1391 aa15.98■□□□□ 0.15
CPNE6-202ENST00000460657 CDCA8Q53HL2 280 aa15.98■□□□□ 0.15
CPNE6-202ENST00000460657 MAP3K1Q13233 1512 aa15.98■□□□□ 0.15
CPNE6-202ENST00000460657 KNSTRNQ9Y448 316 aa15.97■□□□□ 0.15
CPNE6-202ENST00000460657 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.96■□□□□ 0.15
CPNE6-202ENST00000460657 TOPBP1Q92547 1522 aa15.96■□□□□ 0.15
CPNE6-202ENST00000460657 POLA1P09884 1462 aaPredicted RBP15.96■□□□□ 0.15
CPNE6-202ENST00000460657 PRKRIP1Q9H875 184 aaPredicted RBP15.95■□□□□ 0.14
CPNE6-202ENST00000460657 NEFMP07197 916 aa15.95■□□□□ 0.14
CPNE6-202ENST00000460657 NPM1P06748 294 aaKnown RBP eCLIP15.94■□□□□ 0.14
CPNE6-202ENST00000460657 HFM1A2PYH4 1435 aa15.93■□□□□ 0.14
CPNE6-202ENST00000460657 DNMBPQ6XZF7 1577 aa15.92■□□□□ 0.14
CPNE6-202ENST00000460657 TMF1P82094 1093 aa15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms