RNA–Protein interactions for RNA: ENST00000460657.1

CPNE6-202, Transcript of copine 6, humanhuman

TSL 2

Gene CPNE6, Length 4,540 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE6-202ENST00000460657 NISCHQ9Y2I1 1504 aa22.49■■□□□ 1.19
CPNE6-202ENST00000460657 DCAF8L2P0C7V8 631 aa20.72■□□□□ 0.91
CPNE6-202ENST00000460657 SUPT5HO00267 1087 aaKnown RBP20.43■□□□□ 0.86
CPNE6-202ENST00000460657 SHROOM4Q9ULL8 1493 aa20.39■□□□□ 0.85
CPNE6-202ENST00000460657 PCGF6Q9BYE7 350 aa19.28■□□□□ 0.68
CPNE6-202ENST00000460657 EHMT2Q96KQ7 1210 aa19.13■□□□□ 0.65
CPNE6-202ENST00000460657 CHIC1Q5VXU3 224 aa19.1■□□□□ 0.65
CPNE6-202ENST00000460657 FAM9AQ8IZU1 332 aaPredicted RBP19.05■□□□□ 0.64
CPNE6-202ENST00000460657 TRIM41Q8WV44 630 aa19■□□□□ 0.63
CPNE6-202ENST00000460657 HRCP23327 699 aa18.87■□□□□ 0.61
CPNE6-202ENST00000460657 ZCCHC6Q5VYS8 1495 aaKnown RBP18.85■□□□□ 0.61
CPNE6-202ENST00000460657 ZEB1P37275 1124 aaPredicted RBP18.81■□□□□ 0.6
CPNE6-202ENST00000460657 LOC105371045A0A1W2PR82 267 aa18.74■□□□□ 0.59
CPNE6-202ENST00000460657 TRIM26Q12899 539 aaPredicted RBP18.73■□□□□ 0.59
CPNE6-202ENST00000460657 CCDC180Q9P1Z9 1646 aa18.69■□□□□ 0.58
CPNE6-202ENST00000460657 APLP2Q06481 763 aa18.57■□□□□ 0.56
CPNE6-202ENST00000460657 TTBK1Q5TCY1 1321 aaPredicted RBP18.54■□□□□ 0.56
CPNE6-202ENST00000460657 CCER1Q8TC90 406 aaPredicted RBP18.5■□□□□ 0.55
CPNE6-202ENST00000460657 UBTFP17480 764 aaKnown RBP18.41■□□□□ 0.54
CPNE6-202ENST00000460657 PPARGC1BQ86YN6 1023 aaKnown RBP18.41■□□□□ 0.54
CPNE6-202ENST00000460657 ABCC9O60706 1549 aa18.31■□□□□ 0.52
CPNE6-202ENST00000460657 CENPBP07199 599 aaPredicted RBP18.27■□□□□ 0.51
CPNE6-202ENST00000460657 RANGAP1P46060 587 aaPredicted RBP18.22■□□□□ 0.51
CPNE6-202ENST00000460657 DCAF1Q9Y4B6 1507 aa18.22■□□□□ 0.51
CPNE6-202ENST00000460657 MYO15BQ96JP2 1530 aa18.21■□□□□ 0.51
CPNE6-202ENST00000460657 SCRIBQ14160 1630 aa18.16■□□□□ 0.5
CPNE6-202ENST00000460657 PELP1Q8IZL8 1130 aaKnown RBP18.1■□□□□ 0.49
CPNE6-202ENST00000460657 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.01■□□□□ 0.47
CPNE6-202ENST00000460657 RSF1Q96T23 1441 aaPredicted RBP17.97■□□□□ 0.47
CPNE6-202ENST00000460657 PABPN1Q86U42 306 aaKnown RBP eCLIP17.89■□□□□ 0.45
CPNE6-202ENST00000460657 HNRNPUL2Q1KMD3 747 aaKnown RBP17.88■□□□□ 0.45
CPNE6-202ENST00000460657 YTHDC1Q96MU7 727 aaKnown RBP17.87■□□□□ 0.45
CPNE6-202ENST00000460657 ATP1B4Q9UN42 357 aaPredicted RBP17.83■□□□□ 0.44
CPNE6-202ENST00000460657 DIEXFQ68CQ4 756 aaKnown RBP17.82■□□□□ 0.44
CPNE6-202ENST00000460657 CSRNP3Q8WYN3 585 aa17.79■□□□□ 0.44
CPNE6-202ENST00000460657 NACADO15069 1562 aa17.74■□□□□ 0.43
CPNE6-202ENST00000460657 RB1CC1Q8TDY2 1594 aa17.7■□□□□ 0.42
CPNE6-202ENST00000460657 ITGAEP38570 1179 aa17.65■□□□□ 0.42
CPNE6-202ENST00000460657 CECR2Q9BXF3 1484 aa17.57■□□□□ 0.4
CPNE6-202ENST00000460657 ZNF316A6NFI3 1004 aaPredicted RBP17.56■□□□□ 0.4
CPNE6-202ENST00000460657 ACIN1Q9UKV3 1341 aaKnown RBP17.49■□□□□ 0.39
CPNE6-202ENST00000460657 MYT1Q01538 1121 aa17.48■□□□□ 0.39
CPNE6-202ENST00000460657 BAZ1AQ9NRL2 1556 aaPredicted RBP17.48■□□□□ 0.39
CPNE6-202ENST00000460657 NEFLP07196 543 aa17.48■□□□□ 0.39
CPNE6-202ENST00000460657 GTF3C3Q9Y5Q9 886 aa17.47■□□□□ 0.39
CPNE6-202ENST00000460657 EEA1Q15075 1411 aa17.47■□□□□ 0.39
CPNE6-202ENST00000460657 MROH2BQ7Z745 1585 aa17.44■□□□□ 0.38
CPNE6-202ENST00000460657 CEP162Q5TB80 1403 aa17.42■□□□□ 0.38
CPNE6-202ENST00000460657 TNIKQ9UKE5 1360 aa17.37■□□□□ 0.37
CPNE6-202ENST00000460657 GOLGA3Q08378 1498 aa17.36■□□□□ 0.37
CPNE6-202ENST00000460657 FAM50AQ14320 339 aaKnown RBP17.35■□□□□ 0.37
CPNE6-202ENST00000460657 WRNQ14191 1432 aaPredicted RBP eCLIP17.32■□□□□ 0.36
CPNE6-202ENST00000460657 CLIP1P30622 1438 aa17.32■□□□□ 0.36
CPNE6-202ENST00000460657 SCAF1Q9H7N4 1312 aaKnown RBP17.26■□□□□ 0.35
CPNE6-202ENST00000460657 WIZO95785 1651 aa17.24■□□□□ 0.35
CPNE6-202ENST00000460657 NEUROD1Q13562 356 aa17.24■□□□□ 0.35
CPNE6-202ENST00000460657 ERICH6Q7L0X2 663 aa17.22■□□□□ 0.35
CPNE6-202ENST00000460657 CEP164Q9UPV0 1460 aa17.22■□□□□ 0.35
CPNE6-202ENST00000460657 CCDC88BA6NC98 1476 aa17.22■□□□□ 0.35
CPNE6-202ENST00000460657 SOGA1O94964 1423 aa17.21■□□□□ 0.35
CPNE6-202ENST00000460657 BAZ1BQ9UIG0 1483 aaKnown RBP17.18■□□□□ 0.34
CPNE6-202ENST00000460657 ABCC8Q09428 1581 aa17.17■□□□□ 0.34
CPNE6-202ENST00000460657 TOP2AP11388 1531 aaKnown RBP17.15■□□□□ 0.34
CPNE6-202ENST00000460657 P3H3Q8IVL6 736 aa17.14■□□□□ 0.33
CPNE6-202ENST00000460657 MIER1Q8N108 512 aa17.06■□□□□ 0.32
CPNE6-202ENST00000460657 ANP32CO43423 234 aa17.06■□□□□ 0.32
CPNE6-202ENST00000460657 TRIM52Q96A61 297 aa17.05■□□□□ 0.32
CPNE6-202ENST00000460657 CLSPNQ9HAW4 1339 aa17.02■□□□□ 0.32
CPNE6-202ENST00000460657 KIF27Q86VH2 1401 aa17■□□□□ 0.31
CPNE6-202ENST00000460657 SMARCA4P51532 1647 aa17■□□□□ 0.31
CPNE6-202ENST00000460657 POLR3GLQ9BT43 218 aa17■□□□□ 0.31
CPNE6-202ENST00000460657 VPS8Q8N3P4 1428 aa16.97■□□□□ 0.31
CPNE6-202ENST00000460657 BCANQ96GW7 911 aa16.94■□□□□ 0.3
CPNE6-202ENST00000460657 SMARCA2P51531 1590 aa16.91■□□□□ 0.3
CPNE6-202ENST00000460657 TONSLQ96HA7 1378 aa16.89■□□□□ 0.29
CPNE6-202ENST00000460657 DDX10Q13206 875 aaKnown RBP16.88■□□□□ 0.29
CPNE6-202ENST00000460657 CNGB1Q14028 1251 aaPredicted RBP16.88■□□□□ 0.29
CPNE6-202ENST00000460657 RUSC2Q8N2Y8 1516 aa16.85■□□□□ 0.29
CPNE6-202ENST00000460657 MTUS2Q5JR59 1369 aa16.8■□□□□ 0.28
CPNE6-202ENST00000460657 ATAD2BQ9ULI0 1458 aa16.8■□□□□ 0.28
CPNE6-202ENST00000460657 CCNB3Q8WWL7 1395 aa16.8■□□□□ 0.28
CPNE6-202ENST00000460657 ARID3CA6NKF2 412 aa16.78■□□□□ 0.28
CPNE6-202ENST00000460657 RAPGEF2Q9Y4G8 1499 aa16.76■□□□□ 0.27
CPNE6-202ENST00000460657 FKBP8Q14318 412 aa16.75■□□□□ 0.27
CPNE6-202ENST00000460657 KANK4Q5T7N3 995 aaPredicted RBP16.74■□□□□ 0.27
CPNE6-202ENST00000460657 CDK11AQ9UQ88 783 aaPredicted RBP16.74■□□□□ 0.27
CPNE6-202ENST00000460657 CUX2O14529 1486 aa16.74■□□□□ 0.27
CPNE6-202ENST00000460657 ZNF326Q5BKZ1 582 aaKnown RBP16.73■□□□□ 0.27
CPNE6-202ENST00000460657 CARMIL1Q5VZK9 1371 aa16.72■□□□□ 0.27
CPNE6-202ENST00000460657 FHAD1B1AJZ9 1412 aa16.7■□□□□ 0.26
CPNE6-202ENST00000460657 FBLN2P98095 1184 aa16.69■□□□□ 0.26
CPNE6-202ENST00000460657 CHIC2Q9UKJ5 165 aa16.68■□□□□ 0.26
CPNE6-202ENST00000460657 HIRIP3Q9BW71 556 aaPredicted RBP16.66■□□□□ 0.26
CPNE6-202ENST00000460657 HNRNPUQ00839 825 aaKnown RBP eCLIP16.65■□□□□ 0.26
CPNE6-202ENST00000460657 MYT1LQ9UL68 1186 aa16.65■□□□□ 0.26
CPNE6-202ENST00000460657 SIN3AQ96ST3 1273 aa16.63■□□□□ 0.25
CPNE6-202ENST00000460657 ZNF777Q9ULD5 760 aaPredicted RBP16.63■□□□□ 0.25
CPNE6-202ENST00000460657 SETD5Q9C0A6 1442 aa16.6■□□□□ 0.25
CPNE6-202ENST00000460657 TIMELESSQ9UNS1 1208 aa16.6■□□□□ 0.25
CPNE6-202ENST00000460657 RRP7BPQ9NSQ0 103 aa16.58■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms