RNA–Protein interactions for RNA: ENST00000456174.6

HDAC9-218, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,307 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-218ENST00000456174 CLIP1P30622 1438 aa11.48□□□□□ -0.57
HDAC9-218ENST00000456174 MRC2Q9UBG0 1479 aa11.48□□□□□ -0.57
HDAC9-218ENST00000456174 CARMIL1Q5VZK9 1371 aa11.46□□□□□ -0.58
HDAC9-218ENST00000456174 TARBP1Q13395 1621 aaKnown RBP11.45□□□□□ -0.58
HDAC9-218ENST00000456174 ABCA5Q8WWZ7 1642 aa11.44□□□□□ -0.58
HDAC9-218ENST00000456174 RANGAP1P46060 587 aaPredicted RBP11.43□□□□□ -0.58
HDAC9-218ENST00000456174 CUL7Q14999 1698 aa11.43□□□□□ -0.58
HDAC9-218ENST00000456174 WDR62O43379 1518 aa11.42□□□□□ -0.58
HDAC9-218ENST00000456174 TDRD9Q8NDG6 1382 aaKnown RBP11.42□□□□□ -0.58
HDAC9-218ENST00000456174 ERCC6Q03468 1493 aa11.41□□□□□ -0.58
HDAC9-218ENST00000456174 GAPVD1Q14C86 1478 aa11.41□□□□□ -0.58
HDAC9-218ENST00000456174 VPS8Q8N3P4 1428 aa11.39□□□□□ -0.59
HDAC9-218ENST00000456174 PPP6R1Q9UPN7 881 aa11.38□□□□□ -0.59
HDAC9-218ENST00000456174 THOC2Q8NI27 1593 aaKnown RBP11.37□□□□□ -0.59
HDAC9-218ENST00000456174 PBRM1Q86U86 1689 aa11.37□□□□□ -0.59
HDAC9-218ENST00000456174 ARAP1Q96P48 1450 aa11.35□□□□□ -0.59
HDAC9-218ENST00000456174 CTTNBP2Q8WZ74 1663 aa11.35□□□□□ -0.59
HDAC9-218ENST00000456174 IFT140Q96RY7 1462 aa11.35□□□□□ -0.59
HDAC9-218ENST00000456174 ARHGAP35Q9NRY4 1499 aa11.34□□□□□ -0.59
HDAC9-218ENST00000456174 DIEXFQ68CQ4 756 aaKnown RBP11.34□□□□□ -0.59
HDAC9-218ENST00000456174 AQRO60306 1485 aaKnown RBP eCLIP11.33□□□□□ -0.6
HDAC9-218ENST00000456174 ZNF608Q9ULD9 1512 aaPredicted RBP11.3□□□□□ -0.6
HDAC9-218ENST00000456174 GRIN2BQ13224 1484 aa11.29□□□□□ -0.6
HDAC9-218ENST00000456174 ADAMTS12P58397 1594 aa11.28□□□□□ -0.6
HDAC9-218ENST00000456174 EIF4G3O43432 1585 aaKnown RBP11.28□□□□□ -0.6
HDAC9-218ENST00000456174 CLSPNQ9HAW4 1339 aa11.27□□□□□ -0.61
HDAC9-218ENST00000456174 FHAD1B1AJZ9 1412 aa11.27□□□□□ -0.61
HDAC9-218ENST00000456174 DAXXQ9UER7 740 aaPredicted RBP11.27□□□□□ -0.61
HDAC9-218ENST00000456174 EFCAB5A4FU69 1503 aa11.25□□□□□ -0.61
HDAC9-218ENST00000456174 TSHZ2Q9NRE2 1034 aa11.23□□□□□ -0.61
HDAC9-218ENST00000456174 P3H3Q8IVL6 736 aa11.22□□□□□ -0.61
HDAC9-218ENST00000456174 SNAPC4Q5SXM2 1469 aa11.22□□□□□ -0.61
HDAC9-218ENST00000456174 SAMD9Q5K651 1589 aa11.2□□□□□ -0.62
HDAC9-218ENST00000456174 FHOD3Q2V2M9 1422 aa11.2□□□□□ -0.62
HDAC9-218ENST00000456174 PCF11O94913 1555 aaKnown RBP11.18□□□□□ -0.62
HDAC9-218ENST00000456174 IQGAP2Q13576 1575 aa11.18□□□□□ -0.62
HDAC9-218ENST00000456174 MAGI1Q96QZ7 1491 aaPredicted RBP11.18□□□□□ -0.62
HDAC9-218ENST00000456174 KANK4Q5T7N3 995 aaPredicted RBP11.18□□□□□ -0.62
HDAC9-218ENST00000456174 TIAM1Q13009 1591 aa11.17□□□□□ -0.62
HDAC9-218ENST00000456174 MAP3K1Q13233 1512 aa11.16□□□□□ -0.62
HDAC9-218ENST00000456174 GRIN2AQ12879 1464 aa11.16□□□□□ -0.62
HDAC9-218ENST00000456174 CFAP43Q8NDM7 1665 aa11.15□□□□□ -0.62
HDAC9-218ENST00000456174 FMN1Q68DA7 1419 aa11.15□□□□□ -0.62
HDAC9-218ENST00000456174 SYNJ2O15056 1496 aa11.14□□□□□ -0.63
HDAC9-218ENST00000456174 FYCO1Q9BQS8 1478 aa11.14□□□□□ -0.63
HDAC9-218ENST00000456174 CASKIN1Q8WXD9 1431 aa11.14□□□□□ -0.63
HDAC9-218ENST00000456174 KIAA0586Q9BVV6 1533 aa11.13□□□□□ -0.63
HDAC9-218ENST00000456174 CHMP7Q8WUX9 453 aaPredicted RBP11.13□□□□□ -0.63
HDAC9-218ENST00000456174 ATP1B4Q9UN42 357 aaPredicted RBP11.13□□□□□ -0.63
HDAC9-218ENST00000456174 UGGT2Q9NYU1 1516 aa11.11□□□□□ -0.63
HDAC9-218ENST00000456174 LRRC9Q6ZRR7 1453 aa11.11□□□□□ -0.63
HDAC9-218ENST00000456174 FBLN2P98095 1184 aa11.1□□□□□ -0.63
HDAC9-218ENST00000456174 SUPT16HQ9Y5B9 1047 aaKnown RBP11.1□□□□□ -0.63
HDAC9-218ENST00000456174 CEP170Q5SW79 1584 aa11.1□□□□□ -0.63
HDAC9-218ENST00000456174 LRRIQ1Q96JM4 1722 aa11.1□□□□□ -0.63
HDAC9-218ENST00000456174 SLC4A1APQ9BWU0 796 aaKnown RBP11.09□□□□□ -0.63
HDAC9-218ENST00000456174 HNRNPUL2Q1KMD3 747 aaKnown RBP11.07□□□□□ -0.64
HDAC9-218ENST00000456174 KIAA0556O60303 1618 aa11.07□□□□□ -0.64
HDAC9-218ENST00000456174 RRBP1Q9P2E9 1410 aaKnown RBP11.06□□□□□ -0.64
HDAC9-218ENST00000456174 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.06□□□□□ -0.64
HDAC9-218ENST00000456174 NUP160Q12769 1436 aa11.06□□□□□ -0.64
HDAC9-218ENST00000456174 DISP1Q96F81 1524 aa11.06□□□□□ -0.64
HDAC9-218ENST00000456174 YTHDC1Q96MU7 727 aaKnown RBP11.06□□□□□ -0.64
HDAC9-218ENST00000456174 CHD1O14646 1710 aa11.04□□□□□ -0.64
HDAC9-218ENST00000456174 HECW1Q76N89 1606 aa11.04□□□□□ -0.64
HDAC9-218ENST00000456174 ZNF316A6NFI3 1004 aaPredicted RBP11.04□□□□□ -0.64
HDAC9-218ENST00000456174 FOXD1Q16676 465 aa11.03□□□□□ -0.64
HDAC9-218ENST00000456174 CCER1Q8TC90 406 aaPredicted RBP11.03□□□□□ -0.64
HDAC9-218ENST00000456174 CCNB3Q8WWL7 1395 aa11.02□□□□□ -0.64
HDAC9-218ENST00000456174 CCDC18Q5T9S5 1454 aa11.02□□□□□ -0.65
HDAC9-218ENST00000456174 UBE2Q2Q8WVN8 375 aa11.01□□□□□ -0.65
HDAC9-218ENST00000456174 PHLDB1Q86UU1 1377 aa11.01□□□□□ -0.65
HDAC9-218ENST00000456174 ANO8Q9HCE9 1232 aaPredicted RBP11.01□□□□□ -0.65
HDAC9-218ENST00000456174 MTUS2Q5JR59 1369 aa11□□□□□ -0.65
HDAC9-218ENST00000456174 JPH4Q96JJ6 628 aa11□□□□□ -0.65
HDAC9-218ENST00000456174 MYT1LQ9UL68 1186 aa11□□□□□ -0.65
HDAC9-218ENST00000456174 EPRSP07814 1512 aaKnown RBP10.99□□□□□ -0.65
HDAC9-218ENST00000456174 CARMIL2Q6F5E8 1435 aa10.99□□□□□ -0.65
HDAC9-218ENST00000456174 RAPGEF6Q8TEU7 1601 aa10.98□□□□□ -0.65
HDAC9-218ENST00000456174 SUPT6HQ7KZ85 1726 aaKnown RBP10.98□□□□□ -0.65
HDAC9-218ENST00000456174 EHBP1L1Q8N3D4 1523 aa10.98□□□□□ -0.65
HDAC9-218ENST00000456174 MIER1Q8N108 512 aa10.97□□□□□ -0.65
HDAC9-218ENST00000456174 CDK13Q14004 1512 aaKnown RBP10.96□□□□□ -0.65
HDAC9-218ENST00000456174 MAGI3Q5TCQ9 1506 aa10.96□□□□□ -0.65
HDAC9-218ENST00000456174 NCOA2Q15596 1464 aa10.95□□□□□ -0.66
HDAC9-218ENST00000456174 NUP153P49790 1475 aaKnown RBP10.94□□□□□ -0.66
HDAC9-218ENST00000456174 ITGAEP38570 1179 aa10.94□□□□□ -0.66
HDAC9-218ENST00000456174 ARID3CA6NKF2 412 aa10.93□□□□□ -0.66
HDAC9-218ENST00000456174 FAM50AQ14320 339 aaKnown RBP10.93□□□□□ -0.66
HDAC9-218ENST00000456174 ERICH6BQ5W0A0 696 aa10.93□□□□□ -0.66
HDAC9-218ENST00000456174 FGD6Q6ZV73 1430 aa10.93□□□□□ -0.66
HDAC9-218ENST00000456174 PRG4Q92954 1404 aaPredicted RBP10.92□□□□□ -0.66
HDAC9-218ENST00000456174 PLB1Q6P1J6 1458 aa10.92□□□□□ -0.66
HDAC9-218ENST00000456174 ARHGEF11O15085 1522 aa10.92□□□□□ -0.66
HDAC9-218ENST00000456174 SHROOM2Q13796 1616 aa10.92□□□□□ -0.66
HDAC9-218ENST00000456174 MYOM3Q5VTT5 1437 aa10.91□□□□□ -0.66
HDAC9-218ENST00000456174 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.91□□□□□ -0.66
HDAC9-218ENST00000456174 NCBP3Q53F19 620 aaKnown RBP10.89□□□□□ -0.67
HDAC9-218ENST00000456174 ABCA8O94911 1581 aa10.89□□□□□ -0.67
HDAC9-218ENST00000456174 PTPN23Q9H3S7 1636 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 97.3 ms