RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 FHAD1B1AJZ9 1412 aa17.93■□□□□ 0.46
SCN9A-205ENST00000454569 MAGI1Q96QZ7 1491 aaPredicted RBP17.92■□□□□ 0.46
SCN9A-205ENST00000454569 CHD1O14646 1710 aa17.9■□□□□ 0.46
SCN9A-205ENST00000454569 UBTFP17480 764 aaKnown RBP17.88■□□□□ 0.45
SCN9A-205ENST00000454569 SYNJ2O15056 1496 aa17.87■□□□□ 0.45
SCN9A-205ENST00000454569 FBLN2P98095 1184 aa17.86■□□□□ 0.45
SCN9A-205ENST00000454569 GRIN2AQ12879 1464 aa17.84■□□□□ 0.45
SCN9A-205ENST00000454569 CHMP7Q8WUX9 453 aaPredicted RBP17.83■□□□□ 0.45
SCN9A-205ENST00000454569 CTTNBP2Q8WZ74 1663 aa17.83■□□□□ 0.44
SCN9A-205ENST00000454569 TNIKQ9UKE5 1360 aa17.82■□□□□ 0.44
SCN9A-205ENST00000454569 CEP170Q5SW79 1584 aa17.81■□□□□ 0.44
SCN9A-205ENST00000454569 RANGAP1P46060 587 aaPredicted RBP17.77■□□□□ 0.44
SCN9A-205ENST00000454569 NUP160Q12769 1436 aa17.73■□□□□ 0.43
SCN9A-205ENST00000454569 CEP162Q5TB80 1403 aa17.72■□□□□ 0.43
SCN9A-205ENST00000454569 NCBP3Q53F19 620 aaKnown RBP17.69■□□□□ 0.42
SCN9A-205ENST00000454569 IQGAP2Q13576 1575 aa17.68■□□□□ 0.42
SCN9A-205ENST00000454569 KIAA0586Q9BVV6 1533 aa17.68■□□□□ 0.42
SCN9A-205ENST00000454569 CLIP1P30622 1438 aa17.64■□□□□ 0.42
SCN9A-205ENST00000454569 CLASP1Q7Z460 1538 aa17.63■□□□□ 0.41
SCN9A-205ENST00000454569 ARHGAP35Q9NRY4 1499 aa17.63■□□□□ 0.41
SCN9A-205ENST00000454569 P3H3Q8IVL6 736 aa17.62■□□□□ 0.41
SCN9A-205ENST00000454569 SAMD9Q5K651 1589 aa17.6■□□□□ 0.41
SCN9A-205ENST00000454569 UGGT2Q9NYU1 1516 aa17.59■□□□□ 0.41
SCN9A-205ENST00000454569 ARAP1Q96P48 1450 aa17.58■□□□□ 0.41
SCN9A-205ENST00000454569 JPH4Q96JJ6 628 aa17.58■□□□□ 0.41
SCN9A-205ENST00000454569 SHROOM2Q13796 1616 aa17.58■□□□□ 0.4
SCN9A-205ENST00000454569 SLC4A1APQ9BWU0 796 aaKnown RBP17.57■□□□□ 0.4
SCN9A-205ENST00000454569 DISP1Q96F81 1524 aa17.57■□□□□ 0.4
SCN9A-205ENST00000454569 OSCARQ8IYS5 282 aa17.57■□□□□ 0.4
SCN9A-205ENST00000454569 ERCC6L2Q5T890 1561 aa17.56■□□□□ 0.4
SCN9A-205ENST00000454569 FHOD3Q2V2M9 1422 aa17.54■□□□□ 0.4
SCN9A-205ENST00000454569 KIAA0556O60303 1618 aa17.53■□□□□ 0.4
SCN9A-205ENST00000454569 NPM3O75607 178 aaKnown RBP17.53■□□□□ 0.4
SCN9A-205ENST00000454569 EFCAB5A4FU69 1503 aa17.52■□□□□ 0.4
SCN9A-205ENST00000454569 PRG4Q92954 1404 aaPredicted RBP17.51■□□□□ 0.39
SCN9A-205ENST00000454569 MSH5O43196 834 aa17.49■□□□□ 0.39
SCN9A-205ENST00000454569 TTBK1Q5TCY1 1321 aaPredicted RBP17.46■□□□□ 0.39
SCN9A-205ENST00000454569 VPS8Q8N3P4 1428 aa17.43■□□□□ 0.38
SCN9A-205ENST00000454569 CARMIL2Q6F5E8 1435 aa17.42■□□□□ 0.38
SCN9A-205ENST00000454569 LRRIQ1Q96JM4 1722 aa17.41■□□□□ 0.38
SCN9A-205ENST00000454569 PCF11O94913 1555 aaKnown RBP17.4■□□□□ 0.38
SCN9A-205ENST00000454569 CNKSR2Q8WXI2 1034 aa17.38■□□□□ 0.37
SCN9A-205ENST00000454569 SCAF1Q9H7N4 1312 aaKnown RBP17.36■□□□□ 0.37
SCN9A-205ENST00000454569 FMN1Q68DA7 1419 aa17.35■□□□□ 0.37
SCN9A-205ENST00000454569 PLB1Q6P1J6 1458 aa17.35■□□□□ 0.37
SCN9A-205ENST00000454569 PTPRGP23470 1445 aa17.33■□□□□ 0.37
SCN9A-205ENST00000454569 PPARGC1BQ86YN6 1023 aaKnown RBP17.33■□□□□ 0.37
SCN9A-205ENST00000454569 ARHGEF11O15085 1522 aa17.33■□□□□ 0.36
SCN9A-205ENST00000454569 RIMBP3CA6NJZ7 1639 aa17.32■□□□□ 0.36
SCN9A-205ENST00000454569 RIMBP3BA6NNM3 1639 aa17.32■□□□□ 0.36
SCN9A-205ENST00000454569 RAPGEF6Q8TEU7 1601 aa17.32■□□□□ 0.36
SCN9A-205ENST00000454569 RIMBP3Q9UFD9 1639 aa17.32■□□□□ 0.36
SCN9A-205ENST00000454569 CASKIN1Q8WXD9 1431 aa17.32■□□□□ 0.36
SCN9A-205ENST00000454569 ATP1B4Q9UN42 357 aaPredicted RBP17.32■□□□□ 0.36
SCN9A-205ENST00000454569 ABCA8O94911 1581 aa17.31■□□□□ 0.36
SCN9A-205ENST00000454569 ARID3CA6NKF2 412 aa17.29■□□□□ 0.36
SCN9A-205ENST00000454569 FYCO1Q9BQS8 1478 aa17.29■□□□□ 0.36
SCN9A-205ENST00000454569 NUP153P49790 1475 aaKnown RBP17.27■□□□□ 0.36
SCN9A-205ENST00000454569 HECW1Q76N89 1606 aa17.25■□□□□ 0.35
SCN9A-205ENST00000454569 CDK13Q14004 1512 aaKnown RBP17.25■□□□□ 0.35
SCN9A-205ENST00000454569 KANK4Q5T7N3 995 aaPredicted RBP17.24■□□□□ 0.35
SCN9A-205ENST00000454569 CFAP43Q8NDM7 1665 aa17.24■□□□□ 0.35
SCN9A-205ENST00000454569 UACAQ9BZF9 1416 aa17.23■□□□□ 0.35
SCN9A-205ENST00000454569 TIAM1Q13009 1591 aa17.23■□□□□ 0.35
SCN9A-205ENST00000454569 EPRSP07814 1512 aaKnown RBP17.22■□□□□ 0.35
SCN9A-205ENST00000454569 ADCY10Q96PN6 1610 aa17.22■□□□□ 0.35
SCN9A-205ENST00000454569 ABCC2Q92887 1545 aa17.2■□□□□ 0.34
SCN9A-205ENST00000454569 MAGI3Q5TCQ9 1506 aa17.19■□□□□ 0.34
SCN9A-205ENST00000454569 ATP10BO94823 1461 aa17.19■□□□□ 0.34
SCN9A-205ENST00000454569 MAP3K1Q13233 1512 aa17.17■□□□□ 0.34
SCN9A-205ENST00000454569 CYB5RLQ6IPT4 315 aa17.17■□□□□ 0.34
SCN9A-205ENST00000454569 APLP2Q06481 763 aa17.16■□□□□ 0.34
SCN9A-205ENST00000454569 UHRF1BP1LA0JNW5 1464 aa17.16■□□□□ 0.34
SCN9A-205ENST00000454569 MAPK8IP2Q13387 824 aaPredicted RBP17.15■□□□□ 0.34
SCN9A-205ENST00000454569 ZCCHC11Q5TAX3 1644 aaKnown RBP17.15■□□□□ 0.34
SCN9A-205ENST00000454569 CCDC18Q5T9S5 1454 aa17.14■□□□□ 0.33
SCN9A-205ENST00000454569 LRRC9Q6ZRR7 1453 aa17.14■□□□□ 0.33
SCN9A-205ENST00000454569 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.12■□□□□ 0.33
SCN9A-205ENST00000454569 HNRNPUL2Q1KMD3 747 aaKnown RBP17.12■□□□□ 0.33
SCN9A-205ENST00000454569 KDM5BQ9UGL1 1544 aa17.11■□□□□ 0.33
SCN9A-205ENST00000454569 DNAJC5Q9H3Z4 198 aa17.08■□□□□ 0.32
SCN9A-205ENST00000454569 MTUS2Q5JR59 1369 aa17.05■□□□□ 0.32
SCN9A-205ENST00000454569 KIF14Q15058 1648 aa17.05■□□□□ 0.32
SCN9A-205ENST00000454569 EHBP1L1Q8N3D4 1523 aa17.04■□□□□ 0.32
SCN9A-205ENST00000454569 SUPT6HQ7KZ85 1726 aaKnown RBP17.02■□□□□ 0.32
SCN9A-205ENST00000454569 TROQ12816 1431 aaPredicted RBP17.01■□□□□ 0.31
SCN9A-205ENST00000454569 PLEKHD1A6NEE1 506 aa17.01■□□□□ 0.31
SCN9A-205ENST00000454569 PHLDB1Q86UU1 1377 aa17■□□□□ 0.31
SCN9A-205ENST00000454569 NCOA2Q15596 1464 aa17■□□□□ 0.31
SCN9A-205ENST00000454569 ZBTB22O15209 634 aa16.99■□□□□ 0.31
SCN9A-205ENST00000454569 CDK11AQ9UQ88 783 aaPredicted RBP16.98■□□□□ 0.31
SCN9A-205ENST00000454569 ASXL2Q76L83 1435 aa16.98■□□□□ 0.31
SCN9A-205ENST00000454569 KCNH8Q96L42 1107 aa16.97■□□□□ 0.31
SCN9A-205ENST00000454569 NPM1P06748 294 aaKnown RBP eCLIP16.96■□□□□ 0.31
SCN9A-205ENST00000454569 ABCC10Q5T3U5 1492 aa16.95■□□□□ 0.3
SCN9A-205ENST00000454569 CDC42BPAQ5VT25 1732 aa16.95■□□□□ 0.3
SCN9A-205ENST00000454569 WDR7Q9Y4E6 1490 aa16.94■□□□□ 0.3
SCN9A-205ENST00000454569 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.93■□□□□ 0.3
SCN9A-205ENST00000454569 TTC37Q6PGP7 1564 aa16.93■□□□□ 0.3
SCN9A-205ENST00000454569 MAPKBP1O60336 1514 aa16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms