RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 PLPPR3Q6T4P5 718 aa10.35□□□□□ -0.75
SYNE1-213ENST00000448038 CARMIL2Q6F5E8 1435 aa10.3□□□□□ -0.76
SYNE1-213ENST00000448038 RAPGEF2Q9Y4G8 1499 aa10.3□□□□□ -0.76
SYNE1-213ENST00000448038 ERICH6Q7L0X2 663 aa10.3□□□□□ -0.76
SYNE1-213ENST00000448038 VPS8Q8N3P4 1428 aa10.29□□□□□ -0.76
SYNE1-213ENST00000448038 CCNB3Q8WWL7 1395 aa10.28□□□□□ -0.76
SYNE1-213ENST00000448038 CC2D2AQ9P2K1 1620 aa10.28□□□□□ -0.76
SYNE1-213ENST00000448038 RUSC2Q8N2Y8 1516 aa10.27□□□□□ -0.76
SYNE1-213ENST00000448038 KDM2AQ9Y2K7 1162 aa10.27□□□□□ -0.77
SYNE1-213ENST00000448038 BICRAQ9NZM4 1560 aa10.26□□□□□ -0.77
SYNE1-213ENST00000448038 FGD5Q6ZNL6 1462 aa10.26□□□□□ -0.77
SYNE1-213ENST00000448038 FMN1Q68DA7 1419 aa10.25□□□□□ -0.77
SYNE1-213ENST00000448038 ACIN1Q9UKV3 1341 aaKnown RBP10.23□□□□□ -0.77
SYNE1-213ENST00000448038 KANK4Q5T7N3 995 aaPredicted RBP10.23□□□□□ -0.77
SYNE1-213ENST00000448038 JPH4Q96JJ6 628 aa10.23□□□□□ -0.77
SYNE1-213ENST00000448038 RAD54L2Q9Y4B4 1467 aa10.22□□□□□ -0.77
SYNE1-213ENST00000448038 HMGXB3Q12766 1538 aa10.22□□□□□ -0.77
SYNE1-213ENST00000448038 CFTRP13569 1480 aa10.21□□□□□ -0.77
SYNE1-213ENST00000448038 FHOD3Q2V2M9 1422 aa10.21□□□□□ -0.77
SYNE1-213ENST00000448038 DDX10Q13206 875 aaKnown RBP10.21□□□□□ -0.78
SYNE1-213ENST00000448038 GAPVD1Q14C86 1478 aa10.2□□□□□ -0.78
SYNE1-213ENST00000448038 NESP48681 1621 aa10.2□□□□□ -0.78
SYNE1-213ENST00000448038 ARID4BQ4LE39 1312 aaPredicted RBP10.2□□□□□ -0.78
SYNE1-213ENST00000448038 ARHGAP35Q9NRY4 1499 aa10.19□□□□□ -0.78
SYNE1-213ENST00000448038 IGF1RP08069 1367 aa10.19□□□□□ -0.78
SYNE1-213ENST00000448038 RGL3Q3MIN7 710 aa10.19□□□□□ -0.78
SYNE1-213ENST00000448038 NEFMP07197 916 aa10.16□□□□□ -0.78
SYNE1-213ENST00000448038 TRHP20396 242 aaPredicted RBP10.16□□□□□ -0.78
SYNE1-213ENST00000448038 HIRIP3Q9BW71 556 aaPredicted RBP10.16□□□□□ -0.78
SYNE1-213ENST00000448038 SENP3Q9H4L4 574 aaPredicted RBP10.16□□□□□ -0.78
SYNE1-213ENST00000448038 EIF4G2P78344 907 aaKnown RBP eCLIP10.15□□□□□ -0.79
SYNE1-213ENST00000448038 AQRO60306 1485 aaKnown RBP eCLIP10.15□□□□□ -0.79
SYNE1-213ENST00000448038 PPP1R15AO75807 674 aaPredicted RBP10.14□□□□□ -0.79
SYNE1-213ENST00000448038 SIN3AQ96ST3 1273 aa10.13□□□□□ -0.79
SYNE1-213ENST00000448038 UNC13AQ9UPW8 1703 aa10.13□□□□□ -0.79
SYNE1-213ENST00000448038 EFCAB2Q5VUJ9 269 aa10.12□□□□□ -0.79
SYNE1-213ENST00000448038 SLC24A1O60721 1099 aa10.12□□□□□ -0.79
SYNE1-213ENST00000448038 SYNJ1O43426 1573 aa10.11□□□□□ -0.79
SYNE1-213ENST00000448038 OSCARQ8IYS5 282 aa10.11□□□□□ -0.79
SYNE1-213ENST00000448038 MRC2Q9UBG0 1479 aa10.11□□□□□ -0.79
SYNE1-213ENST00000448038 DNAJC5BQ9UF47 199 aa10.1□□□□□ -0.79
SYNE1-213ENST00000448038 SETD5Q9C0A6 1442 aa10.1□□□□□ -0.79
SYNE1-213ENST00000448038 PTPRGP23470 1445 aa10.1□□□□□ -0.79
SYNE1-213ENST00000448038 DAXXQ9UER7 740 aaPredicted RBP10.09□□□□□ -0.79
SYNE1-213ENST00000448038 CCDC18Q5T9S5 1454 aa10.08□□□□□ -0.8
SYNE1-213ENST00000448038 CLSPNQ9HAW4 1339 aa10.08□□□□□ -0.8
SYNE1-213ENST00000448038 TOPBP1Q92547 1522 aa10.08□□□□□ -0.8
SYNE1-213ENST00000448038 KANK1Q14678 1352 aa10.08□□□□□ -0.8
SYNE1-213ENST00000448038 FAM9BQ8IZU0 186 aa10.08□□□□□ -0.8
SYNE1-213ENST00000448038 GRIN2BQ13224 1484 aa10.07□□□□□ -0.8
SYNE1-213ENST00000448038 MLECQ14165 292 aa10.07□□□□□ -0.8
SYNE1-213ENST00000448038 CUX1P39880 1505 aa10.07□□□□□ -0.8
SYNE1-213ENST00000448038 TMC1Q8TDI8 760 aa10.07□□□□□ -0.8
SYNE1-213ENST00000448038 CANXP27824 592 aaKnown RBP10.06□□□□□ -0.8
SYNE1-213ENST00000448038 CARD11Q9BXL7 1154 aa10.06□□□□□ -0.8
SYNE1-213ENST00000448038 HNRNPMP52272 730 aaKnown RBP eCLIP10.06□□□□□ -0.8
SYNE1-213ENST00000448038 GGT6Q6P531 493 aa10.06□□□□□ -0.8
SYNE1-213ENST00000448038 GTF3C3Q9Y5Q9 886 aa10.06□□□□□ -0.8
SYNE1-213ENST00000448038 TOP2BQ02880 1626 aa10.05□□□□□ -0.8
SYNE1-213ENST00000448038 POLA1P09884 1462 aaPredicted RBP10.05□□□□□ -0.8
SYNE1-213ENST00000448038 HNRNPUQ00839 825 aaKnown RBP eCLIP10.05□□□□□ -0.8
SYNE1-213ENST00000448038 CYB5RLQ6IPT4 315 aa10.04□□□□□ -0.8
SYNE1-213ENST00000448038 ANKRD30AQ9BXX3 1397 aa10.04□□□□□ -0.8
SYNE1-213ENST00000448038 IFT140Q96RY7 1462 aa10.04□□□□□ -0.8
SYNE1-213ENST00000448038 PKD2Q13563 968 aa10.03□□□□□ -0.8
SYNE1-213ENST00000448038 RAB3GAP2Q9H2M9 1393 aa10.03□□□□□ -0.8
SYNE1-213ENST00000448038 MRS2Q9HD23 443 aa10.03□□□□□ -0.8
SYNE1-213ENST00000448038 DCAF11Q8TEB1 546 aa10.02□□□□□ -0.81
SYNE1-213ENST00000448038 PEG3Q9GZU2 1588 aa10.02□□□□□ -0.81
SYNE1-213ENST00000448038 DNMBPQ6XZF7 1577 aa10.02□□□□□ -0.81
SYNE1-213ENST00000448038 LAMC3Q9Y6N6 1575 aa10.02□□□□□ -0.81
SYNE1-213ENST00000448038 FOXD1Q16676 465 aa10.02□□□□□ -0.81
SYNE1-213ENST00000448038 RSPH4AQ5TD94 716 aa10.02□□□□□ -0.81
SYNE1-213ENST00000448038 SALL2Q9Y467 1007 aaPredicted RBP10.02□□□□□ -0.81
SYNE1-213ENST00000448038 C14orf37Q86TY3 774 aa10.01□□□□□ -0.81
SYNE1-213ENST00000448038 NUP155O75694 1391 aa10.01□□□□□ -0.81
SYNE1-213ENST00000448038 MIER1Q8N108 512 aa10.01□□□□□ -0.81
SYNE1-213ENST00000448038 SPAG9O60271 1321 aaKnown RBP10□□□□□ -0.81
SYNE1-213ENST00000448038 WDR43Q15061 677 aaKnown RBP eCLIP10□□□□□ -0.81
SYNE1-213ENST00000448038 CDCA8Q53HL2 280 aa10□□□□□ -0.81
SYNE1-213ENST00000448038 MPHOSPH9Q99550 1183 aa10□□□□□ -0.81
SYNE1-213ENST00000448038 KIF21BO75037 1637 aa10□□□□□ -0.81
SYNE1-213ENST00000448038 ERICH3Q5RHP9 1530 aa9.99□□□□□ -0.81
SYNE1-213ENST00000448038 KIF3BO15066 747 aa9.99□□□□□ -0.81
SYNE1-213ENST00000448038 ZBTB47Q9UFB7 747 aaPredicted RBP9.99□□□□□ -0.81
SYNE1-213ENST00000448038 TIMELESSQ9UNS1 1208 aa9.99□□□□□ -0.81
SYNE1-213ENST00000448038 POGKQ9P215 609 aa9.97□□□□□ -0.81
SYNE1-213ENST00000448038 SCAF1Q9H7N4 1312 aaKnown RBP9.97□□□□□ -0.81
SYNE1-213ENST00000448038 PRXQ9BXM0 1461 aa9.96□□□□□ -0.81
SYNE1-213ENST00000448038 SNAPC4Q5SXM2 1469 aa9.96□□□□□ -0.82
SYNE1-213ENST00000448038 PRDM2Q13029 1718 aa9.95□□□□□ -0.82
SYNE1-213ENST00000448038 KNSTRNQ9Y448 316 aa9.95□□□□□ -0.82
SYNE1-213ENST00000448038 BCL11AQ9H165 835 aa9.95□□□□□ -0.82
SYNE1-213ENST00000448038 PLEKHG5O94827 1062 aa9.95□□□□□ -0.82
SYNE1-213ENST00000448038 HDGFP51858 240 aaKnown RBP9.94□□□□□ -0.82
SYNE1-213ENST00000448038 PRG4Q92954 1404 aaPredicted RBP9.93□□□□□ -0.82
SYNE1-213ENST00000448038 ABCA10Q8WWZ4 1543 aa9.93□□□□□ -0.82
SYNE1-213ENST00000448038 CASKIN1Q8WXD9 1431 aa9.93□□□□□ -0.82
SYNE1-213ENST00000448038 ZBTB7CA1YPR0 619 aa9.92□□□□□ -0.82
SYNE1-213ENST00000448038 ARAP1Q96P48 1450 aa9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms