RNA–Protein interactions for RNA: ENST00000446646.1

HDAC9-216, Transcript of histone deacetylase 9, humanhuman

TSL 4

Gene HDAC9, Length 560 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-216ENST00000446646 GAPVD1Q14C86 1478 aa13.66□□□□□ -0.22
HDAC9-216ENST00000446646 CHMP7Q8WUX9 453 aaPredicted RBP13.64□□□□□ -0.23
HDAC9-216ENST00000446646 ABCC8Q09428 1581 aa13.62□□□□□ -0.23
HDAC9-216ENST00000446646 KDM4FA0A1W2PPD8 638 aa13.61□□□□□ -0.23
HDAC9-216ENST00000446646 ERCC6L2Q5T890 1561 aa13.61□□□□□ -0.23
HDAC9-216ENST00000446646 SYNJ1O43426 1573 aa13.6□□□□□ -0.23
HDAC9-216ENST00000446646 SOGA1O94964 1423 aa13.59□□□□□ -0.23
HDAC9-216ENST00000446646 MAGI1Q96QZ7 1491 aaPredicted RBP13.54□□□□□ -0.24
HDAC9-216ENST00000446646 SYNJ2O15056 1496 aa13.53□□□□□ -0.24
HDAC9-216ENST00000446646 GRIN2BQ13224 1484 aa13.5□□□□□ -0.25
HDAC9-216ENST00000446646 FGD5Q6ZNL6 1462 aa13.5□□□□□ -0.25
HDAC9-216ENST00000446646 KIF13AQ9H1H9 1805 aa13.48□□□□□ -0.25
HDAC9-216ENST00000446646 CAPN15O75808 1086 aa13.47□□□□□ -0.25
HDAC9-216ENST00000446646 SPINK5Q9NQ38 1064 aaPredicted RBP13.47□□□□□ -0.25
HDAC9-216ENST00000446646 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.45□□□□□ -0.26
HDAC9-216ENST00000446646 HNRNPUL2Q1KMD3 747 aaKnown RBP13.45□□□□□ -0.26
HDAC9-216ENST00000446646 CUX1P39880 1505 aa13.43□□□□□ -0.26
HDAC9-216ENST00000446646 CEP170Q5SW79 1584 aa13.41□□□□□ -0.26
HDAC9-216ENST00000446646 FAM69CQ0P6D2 419 aa13.41□□□□□ -0.26
HDAC9-216ENST00000446646 WDR97A6NE52 1622 aa13.41□□□□□ -0.26
HDAC9-216ENST00000446646 APLP2Q06481 763 aa13.4□□□□□ -0.26
HDAC9-216ENST00000446646 MYCNP04198 464 aaPredicted RBP13.39□□□□□ -0.27
HDAC9-216ENST00000446646 SAMD1Q6SPF0 538 aaPredicted RBP13.39□□□□□ -0.27
HDAC9-216ENST00000446646 FOXD4L1Q9NU39 408 aa13.39□□□□□ -0.27
HDAC9-216ENST00000446646 PBRM1Q86U86 1689 aa13.37□□□□□ -0.27
HDAC9-216ENST00000446646 EHMT2Q96KQ7 1210 aa13.36□□□□□ -0.27
HDAC9-216ENST00000446646 GRIN2AQ12879 1464 aa13.36□□□□□ -0.27
HDAC9-216ENST00000446646 ABCC10Q5T3U5 1492 aa13.36□□□□□ -0.27
HDAC9-216ENST00000446646 NUP160Q12769 1436 aa13.35□□□□□ -0.27
HDAC9-216ENST00000446646 SHROOM2Q13796 1616 aa13.31□□□□□ -0.28
HDAC9-216ENST00000446646 ABCA5Q8WWZ7 1642 aa13.31□□□□□ -0.28
HDAC9-216ENST00000446646 KDM6BO15054 1643 aa13.3□□□□□ -0.28
HDAC9-216ENST00000446646 DIP2BQ9P265 1576 aa13.29□□□□□ -0.28
HDAC9-216ENST00000446646 PRG4Q92954 1404 aaPredicted RBP13.28□□□□□ -0.28
HDAC9-216ENST00000446646 ABCA10Q8WWZ4 1543 aa13.28□□□□□ -0.28
HDAC9-216ENST00000446646 DSG3P32926 999 aa13.27□□□□□ -0.29
HDAC9-216ENST00000446646 ZNF219Q9P2Y4 722 aaPredicted RBP13.27□□□□□ -0.29
HDAC9-216ENST00000446646 HECW2Q9P2P5 1572 aa13.27□□□□□ -0.29
HDAC9-216ENST00000446646 ZBTB22O15209 634 aa13.26□□□□□ -0.29
HDAC9-216ENST00000446646 ADGRL1O94910 1474 aa13.26□□□□□ -0.29
HDAC9-216ENST00000446646 ADAMTS12P58397 1594 aa13.26□□□□□ -0.29
HDAC9-216ENST00000446646 MAPKBP1O60336 1514 aa13.23□□□□□ -0.29
HDAC9-216ENST00000446646 TSPOAP1O95153 1857 aa13.23□□□□□ -0.29
HDAC9-216ENST00000446646 JPH4Q96JJ6 628 aa13.22□□□□□ -0.29
HDAC9-216ENST00000446646 ADCY10Q96PN6 1610 aa13.21□□□□□ -0.3
HDAC9-216ENST00000446646 ABCB7O75027 752 aa13.18□□□□□ -0.3
HDAC9-216ENST00000446646 NPM1P06748 294 aaKnown RBP eCLIP13.18□□□□□ -0.3
HDAC9-216ENST00000446646 FHAD1B1AJZ9 1412 aa13.18□□□□□ -0.3
HDAC9-216ENST00000446646 FBXO41Q8TF61 875 aa13.17□□□□□ -0.3
HDAC9-216ENST00000446646 COL17A1Q9UMD9 1497 aaPredicted RBP13.16□□□□□ -0.3
HDAC9-216ENST00000446646 PPRC1Q5VV67 1664 aaKnown RBP13.1□□□□□ -0.31
HDAC9-216ENST00000446646 WRNQ14191 1432 aaPredicted RBP eCLIP13.09□□□□□ -0.31
HDAC9-216ENST00000446646 RUSC2Q8N2Y8 1516 aa13.08□□□□□ -0.31
HDAC9-216ENST00000446646 ERICH3Q5RHP9 1530 aa13.05□□□□□ -0.32
HDAC9-216ENST00000446646 ATF5Q9Y2D1 282 aaPredicted RBP13.05□□□□□ -0.32
HDAC9-216ENST00000446646 TTBK1Q5TCY1 1321 aaPredicted RBP13.05□□□□□ -0.32
HDAC9-216ENST00000446646 ILDR2Q71H61 639 aa13.02□□□□□ -0.33
HDAC9-216ENST00000446646 ASXL2Q76L83 1435 aa13.02□□□□□ -0.33
HDAC9-216ENST00000446646 LMTK3Q96Q04 1460 aa13.02□□□□□ -0.33
HDAC9-216ENST00000446646 POLA2Q14181 598 aa12.99□□□□□ -0.33
HDAC9-216ENST00000446646 CSRNP3Q8WYN3 585 aa12.99□□□□□ -0.33
HDAC9-216ENST00000446646 GLI2P10070 1586 aa12.98□□□□□ -0.33
HDAC9-216ENST00000446646 ABCC2Q92887 1545 aa12.97□□□□□ -0.33
HDAC9-216ENST00000446646 PTPRGP23470 1445 aa12.96□□□□□ -0.33
HDAC9-216ENST00000446646 TOP2BQ02880 1626 aa12.95□□□□□ -0.34
HDAC9-216ENST00000446646 KIAA0586Q9BVV6 1533 aa12.94□□□□□ -0.34
HDAC9-216ENST00000446646 PLB1Q6P1J6 1458 aa12.94□□□□□ -0.34
HDAC9-216ENST00000446646 BIVM-ERCC5R4GMW8 1640 aa12.94□□□□□ -0.34
HDAC9-216ENST00000446646 EPRSP07814 1512 aaKnown RBP12.93□□□□□ -0.34
HDAC9-216ENST00000446646 ATXN8OSP0DMR3 200 aa12.93□□□□□ -0.34
HDAC9-216ENST00000446646 SOCS7O14512 581 aa12.9□□□□□ -0.34
HDAC9-216ENST00000446646 MAP3K4Q9Y6R4 1608 aa12.9□□□□□ -0.34
HDAC9-216ENST00000446646 CUL7Q14999 1698 aa12.89□□□□□ -0.35
HDAC9-216ENST00000446646 TNIKQ9UKE5 1360 aa12.87□□□□□ -0.35
HDAC9-216ENST00000446646 IGF1RP08069 1367 aa12.86□□□□□ -0.35
HDAC9-216ENST00000446646 UHRF1BP1LA0JNW5 1464 aa12.85□□□□□ -0.35
HDAC9-216ENST00000446646 TEX14Q8IWB6 1497 aa12.85□□□□□ -0.35
HDAC9-216ENST00000446646 KIF21BO75037 1637 aa12.84□□□□□ -0.35
HDAC9-216ENST00000446646 DISP3Q9P2K9 1392 aa12.84□□□□□ -0.35
HDAC9-216ENST00000446646 UACAQ9BZF9 1416 aa12.84□□□□□ -0.35
HDAC9-216ENST00000446646 PTPRMP28827 1452 aa12.83□□□□□ -0.36
HDAC9-216ENST00000446646 KDM5BQ9UGL1 1544 aa12.82□□□□□ -0.36
HDAC9-216ENST00000446646 HSPA2P54652 639 aa12.8□□□□□ -0.36
HDAC9-216ENST00000446646 DISP1Q96F81 1524 aa12.78□□□□□ -0.36
HDAC9-216ENST00000446646 ZCCHC11Q5TAX3 1644 aaKnown RBP12.78□□□□□ -0.36
HDAC9-216ENST00000446646 CARMIL2Q6F5E8 1435 aa12.78□□□□□ -0.36
HDAC9-216ENST00000446646 CERKQ8TCT0 537 aa12.77□□□□□ -0.37
HDAC9-216ENST00000446646 PCF11O94913 1555 aaKnown RBP12.77□□□□□ -0.37
HDAC9-216ENST00000446646 CD109Q6YHK3 1445 aa12.76□□□□□ -0.37
HDAC9-216ENST00000446646 ADAMTSL3P82987 1691 aa12.76□□□□□ -0.37
HDAC9-216ENST00000446646 KCNH8Q96L42 1107 aa12.75□□□□□ -0.37
HDAC9-216ENST00000446646 ZBTB12Q9Y330 459 aaPredicted RBP12.75□□□□□ -0.37
HDAC9-216ENST00000446646 WDR7Q9Y4E6 1490 aa12.75□□□□□ -0.37
HDAC9-216ENST00000446646 MAGI3Q5TCQ9 1506 aa12.74□□□□□ -0.37
HDAC9-216ENST00000446646 SUPT5HO00267 1087 aaKnown RBP12.72□□□□□ -0.37
HDAC9-216ENST00000446646 CARMIL1Q5VZK9 1371 aa12.71□□□□□ -0.37
HDAC9-216ENST00000446646 IQGAP2Q13576 1575 aa12.7□□□□□ -0.38
HDAC9-216ENST00000446646 MADDQ8WXG6 1647 aa12.7□□□□□ -0.38
HDAC9-216ENST00000446646 RAPGEF3O95398 923 aa12.69□□□□□ -0.38
HDAC9-216ENST00000446646 RBM42Q9BTD8 480 aaKnown RBP12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms