RNA–Protein interactions for RNA: ENST00000442054.5

CDC42BPA-208, Transcript of CDC42 binding protein kinase alpha, humanhuman

TSL 1 (best)

Gene CDC42BPA, Length 3,786 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPA-208ENST00000442054 RUSC2Q8N2Y8 1516 aa11.35□□□□□ -0.59
CDC42BPA-208ENST00000442054 SYNJ2O15056 1496 aa11.33□□□□□ -0.6
CDC42BPA-208ENST00000442054 MAGI1Q96QZ7 1491 aaPredicted RBP11.33□□□□□ -0.6
CDC42BPA-208ENST00000442054 PTPRGP23470 1445 aa11.33□□□□□ -0.6
CDC42BPA-208ENST00000442054 KIF21BO75037 1637 aa11.33□□□□□ -0.6
CDC42BPA-208ENST00000442054 IGF1RP08069 1367 aa11.32□□□□□ -0.6
CDC42BPA-208ENST00000442054 PHF23Q9BUL5 403 aaPredicted RBP11.32□□□□□ -0.6
CDC42BPA-208ENST00000442054 PLEKHD1A6NEE1 506 aa11.31□□□□□ -0.6
CDC42BPA-208ENST00000442054 PRG4Q92954 1404 aaPredicted RBP11.31□□□□□ -0.6
CDC42BPA-208ENST00000442054 EEA1Q15075 1411 aa11.31□□□□□ -0.6
CDC42BPA-208ENST00000442054 TNIKQ9UKE5 1360 aa11.3□□□□□ -0.6
CDC42BPA-208ENST00000442054 ABCA10Q8WWZ4 1543 aa11.3□□□□□ -0.6
CDC42BPA-208ENST00000442054 ZEB1P37275 1124 aaPredicted RBP11.29□□□□□ -0.6
CDC42BPA-208ENST00000442054 CEP162Q5TB80 1403 aa11.28□□□□□ -0.6
CDC42BPA-208ENST00000442054 ZNF777Q9ULD5 760 aaPredicted RBP11.28□□□□□ -0.6
CDC42BPA-208ENST00000442054 BIVM-ERCC5R4GMW8 1640 aa11.27□□□□□ -0.61
CDC42BPA-208ENST00000442054 ARID4BQ4LE39 1312 aaPredicted RBP11.27□□□□□ -0.61
CDC42BPA-208ENST00000442054 EIF4G3O43432 1585 aaKnown RBP11.26□□□□□ -0.61
CDC42BPA-208ENST00000442054 ESF1Q9H501 851 aaKnown RBP11.26□□□□□ -0.61
CDC42BPA-208ENST00000442054 RAPGEF2Q9Y4G8 1499 aa11.25□□□□□ -0.61
CDC42BPA-208ENST00000442054 GRIN2AQ12879 1464 aa11.24□□□□□ -0.61
CDC42BPA-208ENST00000442054 TOP2BQ02880 1626 aa11.23□□□□□ -0.61
CDC42BPA-208ENST00000442054 GOLGA3Q08378 1498 aa11.19□□□□□ -0.62
CDC42BPA-208ENST00000442054 ARHGEF11O15085 1522 aa11.17□□□□□ -0.62
CDC42BPA-208ENST00000442054 PRDM2Q13029 1718 aa11.15□□□□□ -0.62
CDC42BPA-208ENST00000442054 ERICH3Q5RHP9 1530 aa11.15□□□□□ -0.63
CDC42BPA-208ENST00000442054 KIAA0586Q9BVV6 1533 aa11.15□□□□□ -0.63
CDC42BPA-208ENST00000442054 ITGAEP38570 1179 aa11.13□□□□□ -0.63
CDC42BPA-208ENST00000442054 MLECQ14165 292 aa11.13□□□□□ -0.63
CDC42BPA-208ENST00000442054 TARBP1Q13395 1621 aaKnown RBP11.12□□□□□ -0.63
CDC42BPA-208ENST00000442054 PRXQ9BXM0 1461 aa11.09□□□□□ -0.63
CDC42BPA-208ENST00000442054 MTUS2Q5JR59 1369 aa11.08□□□□□ -0.64
CDC42BPA-208ENST00000442054 SLC24A1O60721 1099 aa11.08□□□□□ -0.64
CDC42BPA-208ENST00000442054 FAM50AQ14320 339 aaKnown RBP11.06□□□□□ -0.64
CDC42BPA-208ENST00000442054 FHOD3Q2V2M9 1422 aa11.06□□□□□ -0.64
CDC42BPA-208ENST00000442054 CLIP1P30622 1438 aa11.06□□□□□ -0.64
CDC42BPA-208ENST00000442054 SCAF1Q9H7N4 1312 aaKnown RBP11.06□□□□□ -0.64
CDC42BPA-208ENST00000442054 VPS8Q8N3P4 1428 aa11.05□□□□□ -0.64
CDC42BPA-208ENST00000442054 NUP160Q12769 1436 aa11.05□□□□□ -0.64
CDC42BPA-208ENST00000442054 EFCAB2Q5VUJ9 269 aa11.05□□□□□ -0.64
CDC42BPA-208ENST00000442054 UACAQ9BZF9 1416 aa11.05□□□□□ -0.64
CDC42BPA-208ENST00000442054 CFDP1Q9UEE9 299 aaPredicted RBP11.04□□□□□ -0.64
CDC42BPA-208ENST00000442054 CHD1O14646 1710 aa11.03□□□□□ -0.64
CDC42BPA-208ENST00000442054 ARAP1Q96P48 1450 aa11.03□□□□□ -0.64
CDC42BPA-208ENST00000442054 ADAMTS12P58397 1594 aa11.03□□□□□ -0.64
CDC42BPA-208ENST00000442054 TSPY4P0CV99 314 aa11.02□□□□□ -0.64
CDC42BPA-208ENST00000442054 TSPY10P0CW01 314 aa11.02□□□□□ -0.64
CDC42BPA-208ENST00000442054 WDR97A6NE52 1622 aa11.02□□□□□ -0.65
CDC42BPA-208ENST00000442054 RIMBP3CA6NJZ7 1639 aa11□□□□□ -0.65
CDC42BPA-208ENST00000442054 RIMBP3BA6NNM3 1639 aa11□□□□□ -0.65
CDC42BPA-208ENST00000442054 RIMBP3Q9UFD9 1639 aa11□□□□□ -0.65
CDC42BPA-208ENST00000442054 IQGAP2Q13576 1575 aa10.99□□□□□ -0.65
CDC42BPA-208ENST00000442054 FMN1Q68DA7 1419 aa10.99□□□□□ -0.65
CDC42BPA-208ENST00000442054 CEP170Q5SW79 1584 aa10.98□□□□□ -0.65
CDC42BPA-208ENST00000442054 CUL7Q14999 1698 aa10.98□□□□□ -0.65
CDC42BPA-208ENST00000442054 ABCA5Q8WWZ7 1642 aa10.98□□□□□ -0.65
CDC42BPA-208ENST00000442054 PBRM1Q86U86 1689 aa10.98□□□□□ -0.65
CDC42BPA-208ENST00000442054 BCANQ96GW7 911 aa10.96□□□□□ -0.65
CDC42BPA-208ENST00000442054 RAPGEF3O95398 923 aa10.94□□□□□ -0.66
CDC42BPA-208ENST00000442054 STAG3Q9UJ98 1225 aa10.94□□□□□ -0.66
CDC42BPA-208ENST00000442054 PLB1Q6P1J6 1458 aa10.94□□□□□ -0.66
CDC42BPA-208ENST00000442054 CD109Q6YHK3 1445 aa10.94□□□□□ -0.66
CDC42BPA-208ENST00000442054 ASXL2Q76L83 1435 aa10.93□□□□□ -0.66
CDC42BPA-208ENST00000442054 CCNB3Q8WWL7 1395 aa10.93□□□□□ -0.66
CDC42BPA-208ENST00000442054 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.93□□□□□ -0.66
CDC42BPA-208ENST00000442054 GGT6Q6P531 493 aa10.92□□□□□ -0.66
CDC42BPA-208ENST00000442054 CHIC2Q9UKJ5 165 aa10.91□□□□□ -0.66
CDC42BPA-208ENST00000442054 RRBP1Q9P2E9 1410 aaKnown RBP10.91□□□□□ -0.66
CDC42BPA-208ENST00000442054 CCER1Q8TC90 406 aaPredicted RBP10.9□□□□□ -0.67
CDC42BPA-208ENST00000442054 ARHGAP35Q9NRY4 1499 aa10.88□□□□□ -0.67
CDC42BPA-208ENST00000442054 ERCC6L2Q5T890 1561 aa10.88□□□□□ -0.67
CDC42BPA-208ENST00000442054 HNRNPMP52272 730 aaKnown RBP eCLIP10.88□□□□□ -0.675e-11■■■■■ 37.4
CDC42BPA-208ENST00000442054 TRIM52Q96A61 297 aa10.87□□□□□ -0.67
CDC42BPA-208ENST00000442054 MAP3K1Q13233 1512 aa10.87□□□□□ -0.67
CDC42BPA-208ENST00000442054 SPAG9O60271 1321 aaKnown RBP10.86□□□□□ -0.67
CDC42BPA-208ENST00000442054 CHGAP10645 457 aaKnown RBP10.86□□□□□ -0.67
CDC42BPA-208ENST00000442054 NEUROD1Q13562 356 aa10.86□□□□□ -0.67
CDC42BPA-208ENST00000442054 ACIN1Q9UKV3 1341 aaKnown RBP10.86□□□□□ -0.67
CDC42BPA-208ENST00000442054 CLASP1Q7Z460 1538 aa10.85□□□□□ -0.67
CDC42BPA-208ENST00000442054 ABCC2Q92887 1545 aa10.85□□□□□ -0.67
CDC42BPA-208ENST00000442054 AFAP1Q8N556 730 aa10.85□□□□□ -0.67
CDC42BPA-208ENST00000442054 CFAP43Q8NDM7 1665 aa10.84□□□□□ -0.67
CDC42BPA-208ENST00000442054 TEX14Q8IWB6 1497 aa10.83□□□□□ -0.68
CDC42BPA-208ENST00000442054 DIEXFQ68CQ4 756 aaKnown RBP10.83□□□□□ -0.68
CDC42BPA-208ENST00000442054 DHX57Q6P158 1386 aaKnown RBP10.82□□□□□ -0.68
CDC42BPA-208ENST00000442054 CCDC18Q5T9S5 1454 aa10.81□□□□□ -0.68
CDC42BPA-208ENST00000442054 TIAM1Q13009 1591 aa10.8□□□□□ -0.68
CDC42BPA-208ENST00000442054 KIF3BO15066 747 aa10.8□□□□□ -0.68
CDC42BPA-208ENST00000442054 WDR7Q9Y4E6 1490 aa10.8□□□□□ -0.68
CDC42BPA-208ENST00000442054 UGGT2Q9NYU1 1516 aa10.79□□□□□ -0.68
CDC42BPA-208ENST00000442054 ZNF316A6NFI3 1004 aaPredicted RBP10.79□□□□□ -0.68
CDC42BPA-208ENST00000442054 SENP3Q9H4L4 574 aaPredicted RBP10.79□□□□□ -0.68
CDC42BPA-208ENST00000442054 MAPKBP1O60336 1514 aa10.78□□□□□ -0.68
CDC42BPA-208ENST00000442054 DISP1Q96F81 1524 aa10.78□□□□□ -0.68
CDC42BPA-208ENST00000442054 SCAPERQ9BY12 1400 aa10.78□□□□□ -0.68
CDC42BPA-208ENST00000442054 LRRIQ1Q96JM4 1722 aa10.78□□□□□ -0.68
CDC42BPA-208ENST00000442054 CLSPNQ9HAW4 1339 aa10.78□□□□□ -0.68
CDC42BPA-208ENST00000442054 KANK4Q5T7N3 995 aaPredicted RBP10.77□□□□□ -0.68
CDC42BPA-208ENST00000442054 RRP7BPQ9NSQ0 103 aa10.77□□□□□ -0.68
CDC42BPA-208ENST00000442054 ATP10BO94823 1461 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms