RNA–Protein interactions for RNA: ENST00000441915.5

SEMA3B-207, Transcript of semaphorin 3B, humanhuman

TSL 1 (best)

Gene SEMA3B, Length 2,710 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3B-207ENST00000441915 CC2D2AQ9P2K1 1620 aa23.95■■□□□ 1.42
SEMA3B-207ENST00000441915 SETD5Q9C0A6 1442 aa23.89■■□□□ 1.41
SEMA3B-207ENST00000441915 PHLDB1Q86UU1 1377 aa23.88■■□□□ 1.41
SEMA3B-207ENST00000441915 DNMBPQ6XZF7 1577 aa23.87■■□□□ 1.41
SEMA3B-207ENST00000441915 CFAP43Q8NDM7 1665 aa23.86■■□□□ 1.41
SEMA3B-207ENST00000441915 MAPKBP1O60336 1514 aa23.85■■□□□ 1.41
SEMA3B-207ENST00000441915 PCF11O94913 1555 aaKnown RBP23.85■■□□□ 1.41
SEMA3B-207ENST00000441915 ABCA10Q8WWZ4 1543 aa23.85■■□□□ 1.41
SEMA3B-207ENST00000441915 P3H3Q8IVL6 736 aa23.85■■□□□ 1.41
SEMA3B-207ENST00000441915 FAM50AQ14320 339 aaKnown RBP23.83■■□□□ 1.41
SEMA3B-207ENST00000441915 RAD54L2Q9Y4B4 1467 aa23.83■■□□□ 1.4
SEMA3B-207ENST00000441915 ATP1B4Q9UN42 357 aaPredicted RBP23.82■■□□□ 1.4
SEMA3B-207ENST00000441915 POLA1P09884 1462 aaPredicted RBP23.81■■□□□ 1.4
SEMA3B-207ENST00000441915 TOPBP1Q92547 1522 aa23.8■■□□□ 1.4
SEMA3B-207ENST00000441915 EFCAB5A4FU69 1503 aa23.8■■□□□ 1.4
SEMA3B-207ENST00000441915 FHOD3Q2V2M9 1422 aa23.79■■□□□ 1.4
SEMA3B-207ENST00000441915 FYCO1Q9BQS8 1478 aa23.78■■□□□ 1.4
SEMA3B-207ENST00000441915 CUL7Q14999 1698 aa23.77■■□□□ 1.4
SEMA3B-207ENST00000441915 CASKIN1Q8WXD9 1431 aa23.75■■□□□ 1.39
SEMA3B-207ENST00000441915 AQRO60306 1485 aaKnown RBP eCLIP23.74■■□□□ 1.396e-8■■■■□ 22.8
SEMA3B-207ENST00000441915 CTTNBP2Q8WZ74 1663 aa23.71■■□□□ 1.39
SEMA3B-207ENST00000441915 NESP48681 1621 aa23.7■■□□□ 1.38
SEMA3B-207ENST00000441915 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.7■■□□□ 1.38
SEMA3B-207ENST00000441915 FMN1Q68DA7 1419 aa23.68■■□□□ 1.38
SEMA3B-207ENST00000441915 TIMELESSQ9UNS1 1208 aa23.67■■□□□ 1.38
SEMA3B-207ENST00000441915 SIN3AQ96ST3 1273 aa23.66■■□□□ 1.38
SEMA3B-207ENST00000441915 WDR97A6NE52 1622 aa23.63■■□□□ 1.37
SEMA3B-207ENST00000441915 LAMC3Q9Y6N6 1575 aa23.6■■□□□ 1.37
SEMA3B-207ENST00000441915 FGD6Q6ZV73 1430 aa23.58■■□□□ 1.37
SEMA3B-207ENST00000441915 SNAPC4Q5SXM2 1469 aa23.58■■□□□ 1.37
SEMA3B-207ENST00000441915 URB2Q14146 1524 aaKnown RBP23.57■■□□□ 1.36
SEMA3B-207ENST00000441915 MTUS2Q5JR59 1369 aa23.57■■□□□ 1.36
SEMA3B-207ENST00000441915 SUPT16HQ9Y5B9 1047 aaKnown RBP23.55■■□□□ 1.36
SEMA3B-207ENST00000441915 TDRD9Q8NDG6 1382 aaKnown RBP23.53■■□□□ 1.36
SEMA3B-207ENST00000441915 ABCA5Q8WWZ7 1642 aa23.52■■□□□ 1.36
SEMA3B-207ENST00000441915 SAMD9Q5K651 1589 aa23.52■■□□□ 1.36
SEMA3B-207ENST00000441915 DDX10Q13206 875 aaKnown RBP23.52■■□□□ 1.36
SEMA3B-207ENST00000441915 PPP1R15AO75807 674 aaPredicted RBP23.51■■□□□ 1.35
SEMA3B-207ENST00000441915 GAPVD1Q14C86 1478 aa23.51■■□□□ 1.35
SEMA3B-207ENST00000441915 KCNH8Q96L42 1107 aa23.48■■□□□ 1.35
SEMA3B-207ENST00000441915 CCDC18Q5T9S5 1454 aa23.47■■□□□ 1.35
SEMA3B-207ENST00000441915 HFM1A2PYH4 1435 aa23.46■■□□□ 1.35
SEMA3B-207ENST00000441915 PDS5BQ9NTI5 1447 aa23.46■■□□□ 1.35
SEMA3B-207ENST00000441915 THOC2Q8NI27 1593 aaKnown RBP23.44■■□□□ 1.34
SEMA3B-207ENST00000441915 GRIN2BQ13224 1484 aa23.44■■□□□ 1.34
SEMA3B-207ENST00000441915 NCOA2Q15596 1464 aa23.44■■□□□ 1.34
SEMA3B-207ENST00000441915 UACAQ9BZF9 1416 aa23.44■■□□□ 1.34
SEMA3B-207ENST00000441915 TONSLQ96HA7 1378 aa23.43■■□□□ 1.34
SEMA3B-207ENST00000441915 MYOM3Q5VTT5 1437 aa23.43■■□□□ 1.34
SEMA3B-207ENST00000441915 LRRIQ1Q96JM4 1722 aa23.43■■□□□ 1.34
SEMA3B-207ENST00000441915 PTPRKQ15262 1439 aa23.42■■□□□ 1.34
SEMA3B-207ENST00000441915 PTPN23Q9H3S7 1636 aa23.4■■□□□ 1.34
SEMA3B-207ENST00000441915 SUPT6HQ7KZ85 1726 aaKnown RBP23.4■■□□□ 1.34
SEMA3B-207ENST00000441915 EHBP1L1Q8N3D4 1523 aa23.39■■□□□ 1.34
SEMA3B-207ENST00000441915 HIRIP3Q9BW71 556 aaPredicted RBP23.38■■□□□ 1.33
SEMA3B-207ENST00000441915 NAIPQ13075 1403 aa23.37■■□□□ 1.33
SEMA3B-207ENST00000441915 KIF21AQ7Z4S6 1674 aa23.34■■□□□ 1.33
SEMA3B-207ENST00000441915 ANP32CO43423 234 aa23.33■■□□□ 1.33
SEMA3B-207ENST00000441915 CCER2I3L3R5 266 aa23.32■■□□□ 1.32
SEMA3B-207ENST00000441915 UGGT2Q9NYU1 1516 aa23.31■■□□□ 1.32
SEMA3B-207ENST00000441915 TARBP1Q13395 1621 aaKnown RBP23.3■■□□□ 1.32
SEMA3B-207ENST00000441915 ARHGEF11O15085 1522 aa23.29■■□□□ 1.32
SEMA3B-207ENST00000441915 MAGI3Q5TCQ9 1506 aa23.26■■□□□ 1.31
SEMA3B-207ENST00000441915 HECW1Q76N89 1606 aa23.25■■□□□ 1.31
SEMA3B-207ENST00000441915 DNAJC5BQ9UF47 199 aa23.23■■□□□ 1.31
SEMA3B-207ENST00000441915 TCOF1Q13428 1488 aaKnown RBP23.22■■□□□ 1.31
SEMA3B-207ENST00000441915 RRP7BPQ9NSQ0 103 aa23.21■■□□□ 1.31
SEMA3B-207ENST00000441915 IQGAP2Q13576 1575 aa23.21■■□□□ 1.31
SEMA3B-207ENST00000441915 PBRM1Q86U86 1689 aa23.21■■□□□ 1.31
SEMA3B-207ENST00000441915 EPRSP07814 1512 aaKnown RBP23.19■■□□□ 1.3
SEMA3B-207ENST00000441915 CHIC2Q9UKJ5 165 aa23.18■■□□□ 1.3
SEMA3B-207ENST00000441915 GCC2Q8IWJ2 1684 aa23.17■■□□□ 1.3
SEMA3B-207ENST00000441915 AKNAQ7Z591 1439 aa23.17■■□□□ 1.3
SEMA3B-207ENST00000441915 KDM5BQ9UGL1 1544 aa23.15■■□□□ 1.3
SEMA3B-207ENST00000441915 FKBP8Q14318 412 aa23.15■■□□□ 1.3
SEMA3B-207ENST00000441915 MIA2Q96PC5 1412 aa23.15■■□□□ 1.3
SEMA3B-207ENST00000441915 TRIM52Q96A61 297 aa23.15■■□□□ 1.3
SEMA3B-207ENST00000441915 ADAMTS12P58397 1594 aa23.14■■□□□ 1.3
SEMA3B-207ENST00000441915 TSHZ2Q9NRE2 1034 aa23.14■■□□□ 1.29
SEMA3B-207ENST00000441915 NEFLP07196 543 aa23.11■■□□□ 1.29
SEMA3B-207ENST00000441915 CDK13Q14004 1512 aaKnown RBP23.1■■□□□ 1.29
SEMA3B-207ENST00000441915 BCANQ96GW7 911 aa23.1■■□□□ 1.29
SEMA3B-207ENST00000441915 WDR62O43379 1518 aa23.1■■□□□ 1.29
SEMA3B-207ENST00000441915 DENND4BO75064 1496 aaPredicted RBP23.08■■□□□ 1.29
SEMA3B-207ENST00000441915 MRC2Q9UBG0 1479 aa23.06■■□□□ 1.28
SEMA3B-207ENST00000441915 MPHOSPH9Q99550 1183 aa23.06■■□□□ 1.28
SEMA3B-207ENST00000441915 KDM6BO15054 1643 aa23.05■■□□□ 1.28
SEMA3B-207ENST00000441915 ARID3CA6NKF2 412 aa23.04■■□□□ 1.28
SEMA3B-207ENST00000441915 BCL11AQ9H165 835 aa23.04■■□□□ 1.28
SEMA3B-207ENST00000441915 HSPA5P11021 654 aaKnown RBP23.03■■□□□ 1.28
SEMA3B-207ENST00000441915 EIF4G2P78344 907 aaKnown RBP eCLIP23.02■■□□□ 1.27
SEMA3B-207ENST00000441915 WASHC2AQ641Q2 1341 aa23.01■■□□□ 1.27
SEMA3B-207ENST00000441915 ROCK1Q13464 1354 aa22.98■■□□□ 1.27
SEMA3B-207ENST00000441915 L3MBTL2Q969R5 705 aa22.97■■□□□ 1.27
SEMA3B-207ENST00000441915 DAPK1P53355 1430 aa22.97■■□□□ 1.27
SEMA3B-207ENST00000441915 IFT140Q96RY7 1462 aa22.96■■□□□ 1.27
SEMA3B-207ENST00000441915 KIAA0586Q9BVV6 1533 aa22.96■■□□□ 1.27
SEMA3B-207ENST00000441915 ANP32EQ9BTT0 268 aa22.95■■□□□ 1.27
SEMA3B-207ENST00000441915 KIAA0556O60303 1618 aa22.94■■□□□ 1.26
SEMA3B-207ENST00000441915 FOXD1Q16676 465 aa22.94■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms