RNA–Protein interactions for RNA: ENST00000439274.6

APP-208, Transcript of amyloid beta precursor protein, humanhuman

TSL 1 (best) BASIC

Gene APP, Length 2,517 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APP-208ENST00000439274 CUX2O14529 1486 aa22.52■■□□□ 1.2
APP-208ENST00000439274 IGF1RP08069 1367 aa22.49■■□□□ 1.19
APP-208ENST00000439274 POLA1P09884 1462 aaPredicted RBP22.48■■□□□ 1.19
APP-208ENST00000439274 RAD54L2Q9Y4B4 1467 aa22.44■■□□□ 1.18
APP-208ENST00000439274 CARMIL1Q5VZK9 1371 aa22.4■■□□□ 1.18
APP-208ENST00000439274 WDR97A6NE52 1622 aa22.39■■□□□ 1.17
APP-208ENST00000439274 ABCA10Q8WWZ4 1543 aa22.38■■□□□ 1.17
APP-208ENST00000439274 TIAM1Q13009 1591 aa22.38■■□□□ 1.17
APP-208ENST00000439274 RAB3GAP2Q9H2M9 1393 aa22.36■■□□□ 1.17
APP-208ENST00000439274 P3H3Q8IVL6 736 aa22.31■■□□□ 1.16
APP-208ENST00000439274 MRC2Q9UBG0 1479 aa22.3■■□□□ 1.16
APP-208ENST00000439274 LRRC9Q6ZRR7 1453 aa22.3■■□□□ 1.16
APP-208ENST00000439274 MAPKBP1O60336 1514 aa22.29■■□□□ 1.16
APP-208ENST00000439274 PHLDB1Q86UU1 1377 aa22.29■■□□□ 1.16
APP-208ENST00000439274 MAP3K1Q13233 1512 aa22.29■■□□□ 1.16
APP-208ENST00000439274 TARBP1Q13395 1621 aaKnown RBP22.26■■□□□ 1.15
APP-208ENST00000439274 FAM50AQ14320 339 aaKnown RBP22.25■■□□□ 1.15
APP-208ENST00000439274 ATP1B4Q9UN42 357 aaPredicted RBP22.25■■□□□ 1.15
APP-208ENST00000439274 ABCA5Q8WWZ7 1642 aa22.25■■□□□ 1.15
APP-208ENST00000439274 SETD5Q9C0A6 1442 aa22.24■■□□□ 1.15
APP-208ENST00000439274 PCF11O94913 1555 aaKnown RBP22.22■■□□□ 1.15
APP-208ENST00000439274 WDR62O43379 1518 aa22.22■■□□□ 1.15
APP-208ENST00000439274 FHAD1B1AJZ9 1412 aa22.2■■□□□ 1.14
APP-208ENST00000439274 FHOD3Q2V2M9 1422 aa22.18■■□□□ 1.14
APP-208ENST00000439274 SIN3AQ96ST3 1273 aa22.18■■□□□ 1.14
APP-208ENST00000439274 THOC2Q8NI27 1593 aaKnown RBP22.18■■□□□ 1.14
APP-208ENST00000439274 CFAP43Q8NDM7 1665 aa22.17■■□□□ 1.14
APP-208ENST00000439274 TDRD9Q8NDG6 1382 aaKnown RBP22.16■■□□□ 1.14
APP-208ENST00000439274 KCNH8Q96L42 1107 aa22.15■■□□□ 1.14
APP-208ENST00000439274 ERCC6Q03468 1493 aa22.14■■□□□ 1.14
APP-208ENST00000439274 CUL7Q14999 1698 aa22.14■■□□□ 1.13
APP-208ENST00000439274 SUPT16HQ9Y5B9 1047 aaKnown RBP22.12■■□□□ 1.13
APP-208ENST00000439274 GAPVD1Q14C86 1478 aa22.12■■□□□ 1.13
APP-208ENST00000439274 PBRM1Q86U86 1689 aa22.07■■□□□ 1.12
APP-208ENST00000439274 FYCO1Q9BQS8 1478 aa22.06■■□□□ 1.12
APP-208ENST00000439274 CASKIN1Q8WXD9 1431 aa22.04■■□□□ 1.12
APP-208ENST00000439274 DDX10Q13206 875 aaKnown RBP22.04■■□□□ 1.12
APP-208ENST00000439274 IFT140Q96RY7 1462 aa22.02■■□□□ 1.12
APP-208ENST00000439274 EFCAB5A4FU69 1503 aa22.02■■□□□ 1.12
APP-208ENST00000439274 ZNF608Q9ULD9 1512 aaPredicted RBP22.01■■□□□ 1.11
APP-208ENST00000439274 AQRO60306 1485 aaKnown RBP eCLIP22.01■■□□□ 1.11
APP-208ENST00000439274 HIRIP3Q9BW71 556 aaPredicted RBP22■■□□□ 1.11
APP-208ENST00000439274 CTTNBP2Q8WZ74 1663 aa21.98■■□□□ 1.11
APP-208ENST00000439274 FGD6Q6ZV73 1430 aa21.94■■□□□ 1.1
APP-208ENST00000439274 ADAMTS12P58397 1594 aa21.94■■□□□ 1.1
APP-208ENST00000439274 EIF4G3O43432 1585 aaKnown RBP21.93■■□□□ 1.1
APP-208ENST00000439274 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.93■■□□□ 1.1
APP-208ENST00000439274 PPP1R15AO75807 674 aaPredicted RBP21.92■■□□□ 1.1
APP-208ENST00000439274 SNAPC4Q5SXM2 1469 aa21.92■■□□□ 1.1
APP-208ENST00000439274 FMN1Q68DA7 1419 aa21.92■■□□□ 1.1
APP-208ENST00000439274 TIMELESSQ9UNS1 1208 aa21.9■■□□□ 1.1
APP-208ENST00000439274 GRIN2BQ13224 1484 aa21.9■■□□□ 1.1
APP-208ENST00000439274 MTUS2Q5JR59 1369 aa21.9■■□□□ 1.1
APP-208ENST00000439274 PTPRKQ15262 1439 aa21.89■■□□□ 1.09
APP-208ENST00000439274 CCDC18Q5T9S5 1454 aa21.86■■□□□ 1.09
APP-208ENST00000439274 LRRIQ1Q96JM4 1722 aa21.84■■□□□ 1.09
APP-208ENST00000439274 MYT1Q01538 1121 aa21.84■■□□□ 1.09
APP-208ENST00000439274 TONSLQ96HA7 1378 aa21.82■■□□□ 1.08
APP-208ENST00000439274 SAMD9Q5K651 1589 aa21.82■■□□□ 1.08
APP-208ENST00000439274 HFM1A2PYH4 1435 aa21.81■■□□□ 1.08
APP-208ENST00000439274 NCOA2Q15596 1464 aa21.81■■□□□ 1.08
APP-208ENST00000439274 BCANQ96GW7 911 aa21.8■■□□□ 1.08
APP-208ENST00000439274 PTPN23Q9H3S7 1636 aa21.8■■□□□ 1.08
APP-208ENST00000439274 TSHZ2Q9NRE2 1034 aa21.78■■□□□ 1.08
APP-208ENST00000439274 UACAQ9BZF9 1416 aa21.78■■□□□ 1.08
APP-208ENST00000439274 MYOM3Q5VTT5 1437 aa21.77■■□□□ 1.08
APP-208ENST00000439274 NAIPQ13075 1403 aa21.76■■□□□ 1.07
APP-208ENST00000439274 ANP32CO43423 234 aa21.75■■□□□ 1.07
APP-208ENST00000439274 FKBP8Q14318 412 aa21.74■■□□□ 1.07
APP-208ENST00000439274 TRIM52Q96A61 297 aa21.74■■□□□ 1.07
APP-208ENST00000439274 SUPT6HQ7KZ85 1726 aaKnown RBP21.71■■□□□ 1.07
APP-208ENST00000439274 CCER2I3L3R5 266 aa21.71■■□□□ 1.07
APP-208ENST00000439274 MAGI3Q5TCQ9 1506 aa21.7■■□□□ 1.06
APP-208ENST00000439274 EHBP1L1Q8N3D4 1523 aa21.7■■□□□ 1.06
APP-208ENST00000439274 MAGI1Q96QZ7 1491 aaPredicted RBP21.69■■□□□ 1.06
APP-208ENST00000439274 RRP7BPQ9NSQ0 103 aa21.69■■□□□ 1.06
APP-208ENST00000439274 IQGAP2Q13576 1575 aa21.68■■□□□ 1.06
APP-208ENST00000439274 GRIN2AQ12879 1464 aa21.68■■□□□ 1.06
APP-208ENST00000439274 CHIC2Q9UKJ5 165 aa21.68■■□□□ 1.06
APP-208ENST00000439274 UGGT2Q9NYU1 1516 aa21.67■■□□□ 1.06
APP-208ENST00000439274 KDM5BQ9UGL1 1544 aa21.65■■□□□ 1.06
APP-208ENST00000439274 ARHGEF11O15085 1522 aa21.63■■□□□ 1.05
APP-208ENST00000439274 SYNJ2O15056 1496 aa21.63■■□□□ 1.05
APP-208ENST00000439274 ARID3CA6NKF2 412 aa21.61■■□□□ 1.05
APP-208ENST00000439274 CEP170Q5SW79 1584 aa21.6■■□□□ 1.05
APP-208ENST00000439274 DENND4BO75064 1496 aaPredicted RBP21.58■■□□□ 1.04
APP-208ENST00000439274 KDM6BO15054 1643 aa21.57■■□□□ 1.04
APP-208ENST00000439274 NEFLP07196 543 aa21.57■■□□□ 1.04
APP-208ENST00000439274 KIAA0586Q9BVV6 1533 aa21.56■■□□□ 1.04
APP-208ENST00000439274 TCOF1Q13428 1488 aaKnown RBP21.56■■□□□ 1.04
APP-208ENST00000439274 CDK13Q14004 1512 aaKnown RBP21.55■■□□□ 1.04
APP-208ENST00000439274 HECW1Q76N89 1606 aa21.54■■□□□ 1.04
APP-208ENST00000439274 EPRSP07814 1512 aaKnown RBP21.54■■□□□ 1.04
APP-208ENST00000439274 HSPA5P11021 654 aaKnown RBP21.53■■□□□ 1.04
APP-208ENST00000439274 GCC2Q8IWJ2 1684 aa21.53■■□□□ 1.04
APP-208ENST00000439274 WASHC2AQ641Q2 1341 aa21.52■■□□□ 1.03
APP-208ENST00000439274 NUP160Q12769 1436 aa21.51■■□□□ 1.03
APP-208ENST00000439274 FOXD1Q16676 465 aa21.51■■□□□ 1.03
APP-208ENST00000439274 CHMP7Q8WUX9 453 aaPredicted RBP21.51■■□□□ 1.03
APP-208ENST00000439274 DISP1Q96F81 1524 aa21.5■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms