RNA–Protein interactions for RNA: ENST00000439211.6

DHFR-201, Transcript of dihydrofolate reductase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene DHFR, Length 3,917 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DHFR-201ENST00000439211 DHX57Q6P158 1386 aaKnown RBP22.09■■□□□ 1.13
DHFR-201ENST00000439211 CCNB3Q8WWL7 1395 aa22.06■■□□□ 1.12
DHFR-201ENST00000439211 SIN3AQ96ST3 1273 aa22.03■■□□□ 1.12
DHFR-201ENST00000439211 MSH5O43196 834 aa21.99■■□□□ 1.11
DHFR-201ENST00000439211 KCNH8Q96L42 1107 aa21.93■■□□□ 1.1
DHFR-201ENST00000439211 CUX2O14529 1486 aa21.93■■□□□ 1.1
DHFR-201ENST00000439211 ANP32CO43423 234 aa21.92■■□□□ 1.1
DHFR-201ENST00000439211 ARAP1Q96P48 1450 aa21.92■■□□□ 1.1
DHFR-201ENST00000439211 TRIM52Q96A61 297 aa21.91■■□□□ 1.1
DHFR-201ENST00000439211 RAB3GAP2Q9H2M9 1393 aa21.91■■□□□ 1.1
DHFR-201ENST00000439211 PEG3Q9GZU2 1588 aa21.91■■□□□ 1.1
DHFR-201ENST00000439211 CARMIL1Q5VZK9 1371 aa21.87■■□□□ 1.09
DHFR-201ENST00000439211 ERICH6BQ5W0A0 696 aa21.86■■□□□ 1.09
DHFR-201ENST00000439211 PRXQ9BXM0 1461 aa21.85■■□□□ 1.09
DHFR-201ENST00000439211 IRX6P78412 446 aaPredicted RBP21.85■■□□□ 1.09
DHFR-201ENST00000439211 ARID3CA6NKF2 412 aa21.84■■□□□ 1.09
DHFR-201ENST00000439211 TOP2BQ02880 1626 aa21.84■■□□□ 1.09
DHFR-201ENST00000439211 NCAPD3P42695 1498 aa21.84■■□□□ 1.09
DHFR-201ENST00000439211 CNGB1Q14028 1251 aaPredicted RBP21.83■■□□□ 1.09
DHFR-201ENST00000439211 TONSLQ96HA7 1378 aa21.79■■□□□ 1.08
DHFR-201ENST00000439211 FANCIQ9NVI1 1328 aa21.78■■□□□ 1.08
DHFR-201ENST00000439211 SETD5Q9C0A6 1442 aa21.77■■□□□ 1.08
DHFR-201ENST00000439211 UBE2Q2Q8WVN8 375 aa21.75■■□□□ 1.07
DHFR-201ENST00000439211 CADPSQ9ULU8 1353 aa21.74■■□□□ 1.07
DHFR-201ENST00000439211 ARHGAP35Q9NRY4 1499 aa21.74■■□□□ 1.07
DHFR-201ENST00000439211 CHIC2Q9UKJ5 165 aa21.74■■□□□ 1.07
DHFR-201ENST00000439211 CUX1P39880 1505 aa21.74■■□□□ 1.07
DHFR-201ENST00000439211 ERICH3Q5RHP9 1530 aa21.74■■□□□ 1.07
DHFR-201ENST00000439211 IGF1RP08069 1367 aa21.74■■□□□ 1.07
DHFR-201ENST00000439211 NOP58Q9Y2X3 529 aaKnown RBP21.72■■□□□ 1.07
DHFR-201ENST00000439211 RRBP1Q9P2E9 1410 aaKnown RBP21.72■■□□□ 1.07
DHFR-201ENST00000439211 IL27Q8NEV9 243 aa21.72■■□□□ 1.07
DHFR-201ENST00000439211 MTUS2Q5JR59 1369 aa21.71■■□□□ 1.07
DHFR-201ENST00000439211 POLR3GLQ9BT43 218 aa21.7■■□□□ 1.06
DHFR-201ENST00000439211 CFTRP13569 1480 aa21.67■■□□□ 1.06
DHFR-201ENST00000439211 FHAD1B1AJZ9 1412 aa21.65■■□□□ 1.06
DHFR-201ENST00000439211 PHLDB1Q86UU1 1377 aa21.65■■□□□ 1.06
DHFR-201ENST00000439211 RRP7BPQ9NSQ0 103 aa21.65■■□□□ 1.06
DHFR-201ENST00000439211 ANP32AP39687 249 aaKnown RBP21.64■■□□□ 1.06
DHFR-201ENST00000439211 HNRNPUQ00839 825 aaKnown RBP eCLIP21.64■■□□□ 1.056e-6■■■■□ 19.8
DHFR-201ENST00000439211 FHOD3Q2V2M9 1422 aa21.64■■□□□ 1.05
DHFR-201ENST00000439211 HMGXB3Q12766 1538 aa21.63■■□□□ 1.05
DHFR-201ENST00000439211 ZBTB47Q9UFB7 747 aaPredicted RBP21.6■■□□□ 1.05
DHFR-201ENST00000439211 PPP1R15AO75807 674 aaPredicted RBP21.59■■□□□ 1.05
DHFR-201ENST00000439211 FGD5Q6ZNL6 1462 aa21.57■■□□□ 1.04
DHFR-201ENST00000439211 PKNOX2Q96KN3 472 aa21.57■■□□□ 1.04
DHFR-201ENST00000439211 GLIPR1L2Q4G1C9 344 aa21.54■■□□□ 1.04
DHFR-201ENST00000439211 BIVM-ERCC5R4GMW8 1640 aa21.53■■□□□ 1.04
DHFR-201ENST00000439211 LRRC9Q6ZRR7 1453 aa21.53■■□□□ 1.04
DHFR-201ENST00000439211 FANCD2Q9BXW9 1451 aa21.52■■□□□ 1.04
DHFR-201ENST00000439211 ZNF326Q5BKZ1 582 aaKnown RBP21.5■■□□□ 1.03
DHFR-201ENST00000439211 TDRD9Q8NDG6 1382 aaKnown RBP21.5■■□□□ 1.03
DHFR-201ENST00000439211 TIMELESSQ9UNS1 1208 aa21.5■■□□□ 1.03
DHFR-201ENST00000439211 RAD54L2Q9Y4B4 1467 aa21.49■■□□□ 1.03
DHFR-201ENST00000439211 FAM9BQ8IZU0 186 aa21.48■■□□□ 1.03
DHFR-201ENST00000439211 NPM2Q86SE8 214 aaKnown RBP21.48■■□□□ 1.03
DHFR-201ENST00000439211 TIAM1Q13009 1591 aa21.43■■□□□ 1.02
DHFR-201ENST00000439211 PAK3O75914 559 aaPredicted RBP21.42■■□□□ 1.02
DHFR-201ENST00000439211 CCER2I3L3R5 266 aa21.42■■□□□ 1.02
DHFR-201ENST00000439211 FBLN2P98095 1184 aa21.42■■□□□ 1.02
DHFR-201ENST00000439211 WDR97A6NE52 1622 aa21.42■■□□□ 1.02
DHFR-201ENST00000439211 B4GALNT3Q6L9W6 998 aa21.41■■□□□ 1.02
DHFR-201ENST00000439211 NESP48681 1621 aa21.41■■□□□ 1.02
DHFR-201ENST00000439211 FOXD1Q16676 465 aa21.4■■□□□ 1.02
DHFR-201ENST00000439211 EIF4G2P78344 907 aaKnown RBP eCLIP21.39■■□□□ 1.02
DHFR-201ENST00000439211 CC2D2AQ9P2K1 1620 aa21.38■■□□□ 1.01
DHFR-201ENST00000439211 NEFMP07197 916 aa21.38■■□□□ 1.01
DHFR-201ENST00000439211 LAS1LQ9Y4W2 734 aaKnown RBP21.38■■□□□ 1.01
DHFR-201ENST00000439211 PPP4R2Q9NY27 417 aa21.36■■□□□ 1.01
DHFR-201ENST00000439211 ZNF777Q9ULD5 760 aaPredicted RBP21.36■■□□□ 1.01
DHFR-201ENST00000439211 FMN1Q68DA7 1419 aa21.35■■□□□ 1.01
DHFR-201ENST00000439211 MRS2Q9HD23 443 aa21.35■■□□□ 1.01
DHFR-201ENST00000439211 SENP3-EIF4A1A0A087X0R7 540 aa21.34■■□□□ 1.01
DHFR-201ENST00000439211 HSPA5P11021 654 aaKnown RBP21.34■■□□□ 1.01
DHFR-201ENST00000439211 MAPKBP1O60336 1514 aa21.34■■□□□ 1.01
DHFR-201ENST00000439211 DNAJC5BQ9UF47 199 aa21.32■■□□□ 1
DHFR-201ENST00000439211 CCDC18Q5T9S5 1454 aa21.3■■□□□ 1
DHFR-201ENST00000439211 FGD6Q6ZV73 1430 aa21.29■■□□□ 1
DHFR-201ENST00000439211 DAXXQ9UER7 740 aaPredicted RBP21.29■■□□□ 1
DHFR-201ENST00000439211 SLC4A1APQ9BWU0 796 aaKnown RBP21.28■■□□□ 1
DHFR-201ENST00000439211 VSIG10Q8N0Z9 540 aa21.27■■□□□ 1
DHFR-201ENST00000439211 PODXL2Q9NZ53 605 aa21.25■□□□□ 0.99
DHFR-201ENST00000439211 PCF11O94913 1555 aaKnown RBP21.25■□□□□ 0.99
DHFR-201ENST00000439211 IPO9Q96P70 1041 aaKnown RBP21.24■□□□□ 0.99
DHFR-201ENST00000439211 CASKIN1Q8WXD9 1431 aa21.24■□□□□ 0.99
DHFR-201ENST00000439211 POLA1P09884 1462 aaPredicted RBP21.23■□□□□ 0.99
DHFR-201ENST00000439211 PDS5BQ9NTI5 1447 aa21.23■□□□□ 0.99
DHFR-201ENST00000439211 L3MBTL2Q969R5 705 aa21.22■□□□□ 0.99
DHFR-201ENST00000439211 MPHOSPH9Q99550 1183 aa21.22■□□□□ 0.99
DHFR-201ENST00000439211 TOPBP1Q92547 1522 aa21.22■□□□□ 0.99
DHFR-201ENST00000439211 BRPF3Q9ULD4 1205 aa21.2■□□□□ 0.98
DHFR-201ENST00000439211 FYCO1Q9BQS8 1478 aa21.19■□□□□ 0.98
DHFR-201ENST00000439211 MAP3K1Q13233 1512 aa21.18■□□□□ 0.98
DHFR-201ENST00000439211 UACAQ9BZF9 1416 aa21.17■□□□□ 0.98
DHFR-201ENST00000439211 NCOA2Q15596 1464 aa21.13■□□□□ 0.97
DHFR-201ENST00000439211 PLEKHG5O94827 1062 aa21.13■□□□□ 0.97
DHFR-201ENST00000439211 GAPVD1Q14C86 1478 aa21.13■□□□□ 0.97
DHFR-201ENST00000439211 WASHC2AQ641Q2 1341 aa21.12■□□□□ 0.97
DHFR-201ENST00000439211 MYOM3Q5VTT5 1437 aa21.12■□□□□ 0.97
DHFR-201ENST00000439211 RSPH6AQ9H0K4 717 aa21.11■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms