RNA–Protein interactions for RNA: ENST00000436412.1

NIF3L1-208, Transcript of NGG1 interacting factor 3 like 1, humanhuman

TSL 3

Gene NIF3L1, Length 479 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIF3L1-208ENST00000436412 SP7Q8TDD2 431 aaPredicted RBP16.57■□□□□ 0.24
NIF3L1-208ENST00000436412 PDS5BQ9NTI5 1447 aa16.53■□□□□ 0.24
NIF3L1-208ENST00000436412 PRR29P0C7W0 189 aa16.52■□□□□ 0.24
NIF3L1-208ENST00000436412 CHADLQ6NUI6 762 aa16.47■□□□□ 0.23
NIF3L1-208ENST00000436412 KIF21AQ7Z4S6 1674 aa16.45■□□□□ 0.22
NIF3L1-208ENST00000436412 TRIM41Q8WV44 630 aa16.44■□□□□ 0.22
NIF3L1-208ENST00000436412 HAX1O00165 279 aa16.43■□□□□ 0.22
NIF3L1-208ENST00000436412 CADPSQ9ULU8 1353 aa16.41■□□□□ 0.22
NIF3L1-208ENST00000436412 PROM2Q8N271 834 aa16.41■□□□□ 0.22
NIF3L1-208ENST00000436412 MROH2BQ7Z745 1585 aa16.4■□□□□ 0.22
NIF3L1-208ENST00000436412 EVX2Q03828 476 aa16.39■□□□□ 0.21
NIF3L1-208ENST00000436412 MRC2Q9UBG0 1479 aa16.37■□□□□ 0.21
NIF3L1-208ENST00000436412 STAG3Q9UJ98 1225 aa16.36■□□□□ 0.21
NIF3L1-208ENST00000436412 WDR62O43379 1518 aa16.33■□□□□ 0.2
NIF3L1-208ENST00000436412 C19orf67A6NJJ6 358 aa16.3■□□□□ 0.2
NIF3L1-208ENST00000436412 CREBZFQ9NS37 354 aa16.28■□□□□ 0.2
NIF3L1-208ENST00000436412 FARP1Q9Y4F1 1045 aaPredicted RBP16.25■□□□□ 0.19
NIF3L1-208ENST00000436412 CEP164Q9UPV0 1460 aa16.24■□□□□ 0.19
NIF3L1-208ENST00000436412 FANCD2Q9BXW9 1451 aa16.19■□□□□ 0.18
NIF3L1-208ENST00000436412 WIZO95785 1651 aa16.16■□□□□ 0.18
NIF3L1-208ENST00000436412 CFTRP13569 1480 aa16.15■□□□□ 0.18
NIF3L1-208ENST00000436412 FKBP8Q14318 412 aa16.14■□□□□ 0.17
NIF3L1-208ENST00000436412 MNX1P50219 401 aaPredicted RBP16.08■□□□□ 0.16
NIF3L1-208ENST00000436412 URB2Q14146 1524 aaKnown RBP16.05■□□□□ 0.16
NIF3L1-208ENST00000436412 CD44P16070 742 aaKnown RBP16.05■□□□□ 0.16
NIF3L1-208ENST00000436412 TOP2AP11388 1531 aaKnown RBP15.99■□□□□ 0.15
NIF3L1-208ENST00000436412 RSF1Q96T23 1441 aaPredicted RBP15.99■□□□□ 0.15
NIF3L1-208ENST00000436412 GABBR2O75899 941 aa15.97■□□□□ 0.15
NIF3L1-208ENST00000436412 RIMBP3CA6NJZ7 1639 aa15.97■□□□□ 0.15
NIF3L1-208ENST00000436412 RIMBP3BA6NNM3 1639 aa15.97■□□□□ 0.15
NIF3L1-208ENST00000436412 RIMBP3Q9UFD9 1639 aa15.97■□□□□ 0.15
NIF3L1-208ENST00000436412 IFT140Q96RY7 1462 aa15.95■□□□□ 0.14
NIF3L1-208ENST00000436412 PRDM2Q13029 1718 aa15.91■□□□□ 0.14
NIF3L1-208ENST00000436412 ARHGEF11O15085 1522 aa15.91■□□□□ 0.14
NIF3L1-208ENST00000436412 ZNF608Q9ULD9 1512 aaPredicted RBP15.89■□□□□ 0.13
NIF3L1-208ENST00000436412 NPM1P06748 294 aaKnown RBP eCLIP15.87■□□□□ 0.13
NIF3L1-208ENST00000436412 ZRANB1Q9UGI0 708 aa15.87■□□□□ 0.13
NIF3L1-208ENST00000436412 ZNF579Q8NAF0 562 aaKnown RBP15.86■□□□□ 0.13
NIF3L1-208ENST00000436412 ABCC8Q09428 1581 aa15.86■□□□□ 0.13
NIF3L1-208ENST00000436412 TOPBP1Q92547 1522 aa15.84■□□□□ 0.13
NIF3L1-208ENST00000436412 CYB5RLQ6IPT4 315 aa15.83■□□□□ 0.12
NIF3L1-208ENST00000436412 MIER1Q8N108 512 aa15.82■□□□□ 0.12
NIF3L1-208ENST00000436412 CCDC88BA6NC98 1476 aa15.82■□□□□ 0.12
NIF3L1-208ENST00000436412 EIF4G3O43432 1585 aaKnown RBP15.79■□□□□ 0.12
NIF3L1-208ENST00000436412 DNMBPQ6XZF7 1577 aa15.76■□□□□ 0.11
NIF3L1-208ENST00000436412 AQRO60306 1485 aaKnown RBP eCLIP15.74■□□□□ 0.11
NIF3L1-208ENST00000436412 CLCN6P51797 869 aa15.74■□□□□ 0.11
NIF3L1-208ENST00000436412 ARAP1Q96P48 1450 aa15.72■□□□□ 0.11
NIF3L1-208ENST00000436412 PAK3O75914 559 aaPredicted RBP15.72■□□□□ 0.11
NIF3L1-208ENST00000436412 PHF12Q96QT6 1004 aa15.72■□□□□ 0.11
NIF3L1-208ENST00000436412 TARBP1Q13395 1621 aaKnown RBP15.72■□□□□ 0.11
NIF3L1-208ENST00000436412 PLCD3Q8N3E9 789 aa15.71■□□□□ 0.11
NIF3L1-208ENST00000436412 CHD1O14646 1710 aa15.71■□□□□ 0.1
NIF3L1-208ENST00000436412 POTEIP0CG38 1075 aa15.7■□□□□ 0.1
NIF3L1-208ENST00000436412 PLEKHG5O94827 1062 aa15.69■□□□□ 0.1
NIF3L1-208ENST00000436412 POLA1P09884 1462 aaPredicted RBP15.66■□□□□ 0.1
NIF3L1-208ENST00000436412 GALR2O43603 387 aaPredicted RBP15.66■□□□□ 0.1
NIF3L1-208ENST00000436412 FBXO3Q9UK99 471 aa15.66■□□□□ 0.1
NIF3L1-208ENST00000436412 RASEFQ8IZ41 740 aa15.64■□□□□ 0.09
NIF3L1-208ENST00000436412 TSPYL2Q9H2G4 693 aaPredicted RBP15.64■□□□□ 0.09
NIF3L1-208ENST00000436412 CCDC61Q9Y6R9 512 aa15.62■□□□□ 0.09
NIF3L1-208ENST00000436412 SOGA1O94964 1423 aa15.6■□□□□ 0.09
NIF3L1-208ENST00000436412 WDR97A6NE52 1622 aa15.59■□□□□ 0.09
NIF3L1-208ENST00000436412 NUBP1P53384 320 aa15.59■□□□□ 0.09
NIF3L1-208ENST00000436412 TDRD9Q8NDG6 1382 aaKnown RBP15.59■□□□□ 0.09
NIF3L1-208ENST00000436412 RAD54L2Q9Y4B4 1467 aa15.59■□□□□ 0.09
NIF3L1-208ENST00000436412 CHMP7Q8WUX9 453 aaPredicted RBP15.57■□□□□ 0.08
NIF3L1-208ENST00000436412 CLASP1Q7Z460 1538 aa15.57■□□□□ 0.08
NIF3L1-208ENST00000436412 ZBTB47Q9UFB7 747 aaPredicted RBP15.56■□□□□ 0.08
NIF3L1-208ENST00000436412 SYNJ1O43426 1573 aa15.55■□□□□ 0.08
NIF3L1-208ENST00000436412 SNAPC4Q5SXM2 1469 aa15.55■□□□□ 0.08
NIF3L1-208ENST00000436412 MAGI1Q96QZ7 1491 aaPredicted RBP15.55■□□□□ 0.08
NIF3L1-208ENST00000436412 LHX8Q68G74 356 aa15.55■□□□□ 0.08
NIF3L1-208ENST00000436412 VASPP50552 380 aaPredicted RBP15.54■□□□□ 0.08
NIF3L1-208ENST00000436412 MS4A3Q96HJ5 214 aa15.52■□□□□ 0.08
NIF3L1-208ENST00000436412 GRIN2BQ13224 1484 aa15.52■□□□□ 0.07
NIF3L1-208ENST00000436412 DCBLD2Q96PD2 775 aa15.51■□□□□ 0.07
NIF3L1-208ENST00000436412 FGD5Q6ZNL6 1462 aa15.51■□□□□ 0.07
NIF3L1-208ENST00000436412 SYNJ2O15056 1496 aa15.49■□□□□ 0.07
NIF3L1-208ENST00000436412 KIF12Q96FN5 646 aa15.49■□□□□ 0.07
NIF3L1-208ENST00000436412 GAPVD1Q14C86 1478 aa15.44■□□□□ 0.06
NIF3L1-208ENST00000436412 CUX1P39880 1505 aa15.43■□□□□ 0.06
NIF3L1-208ENST00000436412 MAP3K13O43283 966 aa15.41■□□□□ 0.06
NIF3L1-208ENST00000436412 PELP1Q8IZL8 1130 aaKnown RBP15.37■□□□□ 0.05
NIF3L1-208ENST00000436412 FAM212AQ96EL1 285 aa15.36■□□□□ 0.05
NIF3L1-208ENST00000436412 PBRM1Q86U86 1689 aa15.35■□□□□ 0.05
NIF3L1-208ENST00000436412 ABCA10Q8WWZ4 1543 aa15.35■□□□□ 0.05
NIF3L1-208ENST00000436412 ASTLQ6HA08 431 aaPredicted RBP15.35■□□□□ 0.05
NIF3L1-208ENST00000436412 TRPC6Q9Y210 931 aa15.35■□□□□ 0.05
NIF3L1-208ENST00000436412 ATMINO43313 823 aaPredicted RBP15.33■□□□□ 0.04
NIF3L1-208ENST00000436412 IFNLR1Q8IU57 520 aaPredicted RBP15.33■□□□□ 0.04
NIF3L1-208ENST00000436412 KLHL34Q8N239 644 aa15.31■□□□□ 0.04
NIF3L1-208ENST00000436412 ABCA5Q8WWZ7 1642 aa15.31■□□□□ 0.04
NIF3L1-208ENST00000436412 GRIN2AQ12879 1464 aa15.29■□□□□ 0.04
NIF3L1-208ENST00000436412 SGIP1Q9BQI5 828 aa15.28■□□□□ 0.04
NIF3L1-208ENST00000436412 DCAF8Q5TAQ9 597 aa15.27■□□□□ 0.04
NIF3L1-208ENST00000436412 PLSCR2Q9NRY7 297 aa15.27■□□□□ 0.04
NIF3L1-208ENST00000436412 NUP160Q12769 1436 aa15.26■□□□□ 0.03
NIF3L1-208ENST00000436412 BMP2KQ9NSY1 1161 aaPredicted RBP15.26■□□□□ 0.03
NIF3L1-208ENST00000436412 PCDHB13Q9Y5F0 798 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 6.8 ms