RNA–Protein interactions for RNA: ENST00000436412.1

NIF3L1-208, Transcript of NGG1 interacting factor 3 like 1, humanhuman

TSL 3

Gene NIF3L1, Length 479 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIF3L1-208ENST00000436412 AEBP2Q6ZN18 517 aaPredicted RBP31.42■■■□□ 2.62
NIF3L1-208ENST00000436412 CHIC1Q5VXU3 224 aa30.05■■■□□ 2.4
NIF3L1-208ENST00000436412 SENP3Q9H4L4 574 aaPredicted RBP26.63■■□□□ 1.85
NIF3L1-208ENST00000436412 PHF23Q9BUL5 403 aaPredicted RBP26.44■■□□□ 1.82
NIF3L1-208ENST00000436412 FOXD1Q16676 465 aa24.86■■□□□ 1.57
NIF3L1-208ENST00000436412 PLPPR3Q6T4P5 718 aa24.09■■□□□ 1.45
NIF3L1-208ENST00000436412 PPP6R1Q9UPN7 881 aa23.51■■□□□ 1.35
NIF3L1-208ENST00000436412 ADRA2BP18089 450 aa23.41■■□□□ 1.34
NIF3L1-208ENST00000436412 POTEDQ86YR6 584 aa23.23■■□□□ 1.31
NIF3L1-208ENST00000436412 PIAS4Q8N2W9 510 aaPredicted RBP23.22■■□□□ 1.31
NIF3L1-208ENST00000436412 MSH5O43196 834 aa23.06■■□□□ 1.28
NIF3L1-208ENST00000436412 MAPK8IP2Q13387 824 aaPredicted RBP21.43■■□□□ 1.02
NIF3L1-208ENST00000436412 NISCHQ9Y2I1 1504 aa21.34■■□□□ 1.01
NIF3L1-208ENST00000436412 SCAF1Q9H7N4 1312 aaKnown RBP21.29■■□□□ 1
NIF3L1-208ENST00000436412 DMRT2Q9Y5R5 561 aa21.21■□□□□ 0.99
NIF3L1-208ENST00000436412 PPP4R3CPQ6ZMV5 832 aa21.18■□□□□ 0.98
NIF3L1-208ENST00000436412 CNKSR2Q8WXI2 1034 aa20.7■□□□□ 0.9
NIF3L1-208ENST00000436412 HOXD11P31277 338 aaPredicted RBP20.56■□□□□ 0.88
NIF3L1-208ENST00000436412 RNF216Q9NWF9 866 aaPredicted RBP20.45■□□□□ 0.86
NIF3L1-208ENST00000436412 NCBP3Q53F19 620 aaKnown RBP20.37■□□□□ 0.85
NIF3L1-208ENST00000436412 DCAF8L1A6NGE4 600 aa20.2■□□□□ 0.82
NIF3L1-208ENST00000436412 NPM3O75607 178 aaKnown RBP20.19■□□□□ 0.82
NIF3L1-208ENST00000436412 KCNA4P22459 653 aa20.08■□□□□ 0.81
NIF3L1-208ENST00000436412 CACNB1Q02641 598 aaPredicted RBP19.8■□□□□ 0.76
NIF3L1-208ENST00000436412 DNAJC5BQ9UF47 199 aa19.78■□□□□ 0.76
NIF3L1-208ENST00000436412 RNF39Q9H2S5 420 aa19.77■□□□□ 0.76
NIF3L1-208ENST00000436412 ABCC9O60706 1549 aa19.55■□□□□ 0.72
NIF3L1-208ENST00000436412 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.48■□□□□ 0.71
NIF3L1-208ENST00000436412 C1QBPQ07021 282 aaKnown RBP19.44■□□□□ 0.7
NIF3L1-208ENST00000436412 CCDC180Q9P1Z9 1646 aa19.29■□□□□ 0.68
NIF3L1-208ENST00000436412 SLC4A2P04920 1241 aa19.25■□□□□ 0.67
NIF3L1-208ENST00000436412 U3KPZ7 1027 aaPredicted RBP19.22■□□□□ 0.67
NIF3L1-208ENST00000436412 SLC4A1APQ9BWU0 796 aaKnown RBP18.95■□□□□ 0.62
NIF3L1-208ENST00000436412 SPINK5Q9NQ38 1064 aaPredicted RBP18.84■□□□□ 0.61
NIF3L1-208ENST00000436412 CAPN15O75808 1086 aa18.7■□□□□ 0.58
NIF3L1-208ENST00000436412 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.64■□□□□ 0.57
NIF3L1-208ENST00000436412 HNRNPUL2Q1KMD3 747 aaKnown RBP18.64■□□□□ 0.57
NIF3L1-208ENST00000436412 MYCNP04198 464 aaPredicted RBP18.61■□□□□ 0.57
NIF3L1-208ENST00000436412 DSG3P32926 999 aa18.61■□□□□ 0.57
NIF3L1-208ENST00000436412 FOXD4L1Q9NU39 408 aa18.59■□□□□ 0.57
NIF3L1-208ENST00000436412 SAMD1Q6SPF0 538 aaPredicted RBP18.57■□□□□ 0.56
NIF3L1-208ENST00000436412 APLP2Q06481 763 aa18.55■□□□□ 0.56
NIF3L1-208ENST00000436412 RB1CC1Q8TDY2 1594 aa18.52■□□□□ 0.56
NIF3L1-208ENST00000436412 ZBTB22O15209 634 aa18.52■□□□□ 0.56
NIF3L1-208ENST00000436412 TRHP20396 242 aaPredicted RBP18.49■□□□□ 0.55
NIF3L1-208ENST00000436412 ZNF219Q9P2Y4 722 aaPredicted RBP18.46■□□□□ 0.55
NIF3L1-208ENST00000436412 ABCB7O75027 752 aa18.34■□□□□ 0.53
NIF3L1-208ENST00000436412 NACADO15069 1562 aa18.34■□□□□ 0.53
NIF3L1-208ENST00000436412 ATF5Q9Y2D1 282 aaPredicted RBP18.27■□□□□ 0.52
NIF3L1-208ENST00000436412 PABPN1Q86U42 306 aaKnown RBP eCLIP18.15■□□□□ 0.5
NIF3L1-208ENST00000436412 DCAF8L2P0C7V8 631 aa18.13■□□□□ 0.49
NIF3L1-208ENST00000436412 POLA2Q14181 598 aa18.09■□□□□ 0.49
NIF3L1-208ENST00000436412 POTEHQ6S545 545 aa18.07■□□□□ 0.48
NIF3L1-208ENST00000436412 MYO15BQ96JP2 1530 aa18.03■□□□□ 0.48
NIF3L1-208ENST00000436412 UNC13AQ9UPW8 1703 aa18.02■□□□□ 0.48
NIF3L1-208ENST00000436412 ATXN8OSP0DMR3 200 aa17.99■□□□□ 0.47
NIF3L1-208ENST00000436412 BICRAQ9NZM4 1560 aa17.95■□□□□ 0.46
NIF3L1-208ENST00000436412 CSRNP3Q8WYN3 585 aa17.9■□□□□ 0.46
NIF3L1-208ENST00000436412 SHROOM4Q9ULL8 1493 aa17.78■□□□□ 0.44
NIF3L1-208ENST00000436412 EHMT2Q96KQ7 1210 aa17.74■□□□□ 0.43
NIF3L1-208ENST00000436412 ZBTB12Q9Y330 459 aaPredicted RBP17.68■□□□□ 0.42
NIF3L1-208ENST00000436412 CECR2Q9BXF3 1484 aa17.68■□□□□ 0.42
NIF3L1-208ENST00000436412 DCAF1Q9Y4B6 1507 aa17.67■□□□□ 0.42
NIF3L1-208ENST00000436412 RBM42Q9BTD8 480 aaKnown RBP17.65■□□□□ 0.42
NIF3L1-208ENST00000436412 CC2D2AQ9P2K1 1620 aa17.65■□□□□ 0.42
NIF3L1-208ENST00000436412 ZCCHC6Q5VYS8 1495 aaKnown RBP17.62■□□□□ 0.41
NIF3L1-208ENST00000436412 EIF4G1Q04637 1599 aaKnown RBP17.55■□□□□ 0.4
NIF3L1-208ENST00000436412 OSCARQ8IYS5 282 aa17.51■□□□□ 0.39
NIF3L1-208ENST00000436412 SCRIBQ14160 1630 aa17.49■□□□□ 0.39
NIF3L1-208ENST00000436412 MKRN4PQ13434 485 aaPredicted RBP17.44■□□□□ 0.38
NIF3L1-208ENST00000436412 DNAJC5Q9H3Z4 198 aa17.39■□□□□ 0.37
NIF3L1-208ENST00000436412 FBLN2P98095 1184 aa17.37■□□□□ 0.37
NIF3L1-208ENST00000436412 AKT1S1Q96B36 256 aa17.36■□□□□ 0.37
NIF3L1-208ENST00000436412 REM2Q8IYK8 340 aaPredicted RBP17.22■□□□□ 0.35
NIF3L1-208ENST00000436412 SPDYE2BA6NHP3 402 aa17.2■□□□□ 0.34
NIF3L1-208ENST00000436412 SPDYE6P0CI01 402 aa17.2■□□□□ 0.34
NIF3L1-208ENST00000436412 SPDYE2Q495Y8 402 aa17.2■□□□□ 0.34
NIF3L1-208ENST00000436412 CHRDL2Q6WN34 429 aa17.2■□□□□ 0.34
NIF3L1-208ENST00000436412 SSUH2Q9Y2M2 353 aa17.07■□□□□ 0.32
NIF3L1-208ENST00000436412 CUX2O14529 1486 aa17.05■□□□□ 0.32
NIF3L1-208ENST00000436412 PITPNM1O00562 1244 aa17.04■□□□□ 0.32
NIF3L1-208ENST00000436412 ZNF692Q9BU19 519 aaPredicted RBP17.03■□□□□ 0.32
NIF3L1-208ENST00000436412 NCAPD3P42695 1498 aa16.94■□□□□ 0.3
NIF3L1-208ENST00000436412 ERCC6Q03468 1493 aa16.93■□□□□ 0.3
NIF3L1-208ENST00000436412 PIP4P2Q8N4L2 257 aa16.89■□□□□ 0.29
NIF3L1-208ENST00000436412 FXR2P51116 673 aaKnown RBP eCLIP16.86■□□□□ 0.29
NIF3L1-208ENST00000436412 SPDYE1Q8NFV5 336 aaPredicted RBP16.82■□□□□ 0.28
NIF3L1-208ENST00000436412 ATAD2BQ9ULI0 1458 aa16.81■□□□□ 0.28
NIF3L1-208ENST00000436412 SMARCA2P51531 1590 aa16.77■□□□□ 0.28
NIF3L1-208ENST00000436412 HMGXB3Q12766 1538 aa16.77■□□□□ 0.28
NIF3L1-208ENST00000436412 CLEC11AQ9Y240 323 aa16.75■□□□□ 0.27
NIF3L1-208ENST00000436412 SMARCA4P51532 1647 aa16.69■□□□□ 0.26
NIF3L1-208ENST00000436412 NESP48681 1621 aa16.68■□□□□ 0.26
NIF3L1-208ENST00000436412 SPDYE4A6NLX3 237 aa16.67■□□□□ 0.26
NIF3L1-208ENST00000436412 BAZ1BQ9UIG0 1483 aaKnown RBP16.63■□□□□ 0.25
NIF3L1-208ENST00000436412 BAZ1AQ9NRL2 1556 aaPredicted RBP16.6■□□□□ 0.25
NIF3L1-208ENST00000436412 THOC2Q8NI27 1593 aaKnown RBP16.59■□□□□ 0.25
NIF3L1-208ENST00000436412 LAMC3Q9Y6N6 1575 aa16.59■□□□□ 0.25
NIF3L1-208ENST00000436412 PEG3Q9GZU2 1588 aa16.58■□□□□ 0.24
NIF3L1-208ENST00000436412 PRKAR2AP13861 404 aaKnown RBP16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms