RNA–Protein interactions for RNA: ENST00000434425.5

RFC3-202, Transcript of replication factor C subunit 3, humanhuman

TSL 5 BASIC

Gene RFC3, Length 1,461 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3-202ENST00000434425 PEG3Q9GZU2 1588 aa9.15□□□□□ -0.94
RFC3-202ENST00000434425 MROH2BQ7Z745 1585 aa9.15□□□□□ -0.95
RFC3-202ENST00000434425 PDS5BQ9NTI5 1447 aa9.14□□□□□ -0.95
RFC3-202ENST00000434425 PLCB2Q00722 1185 aa9.14□□□□□ -0.95
RFC3-202ENST00000434425 GTF3C3Q9Y5Q9 886 aa9.13□□□□□ -0.95
RFC3-202ENST00000434425 MKRN4PQ13434 485 aaPredicted RBP9.11□□□□□ -0.95
RFC3-202ENST00000434425 CADPSQ9ULU8 1353 aa9.11□□□□□ -0.95
RFC3-202ENST00000434425 SPINK5Q9NQ38 1064 aaPredicted RBP9.1□□□□□ -0.95
RFC3-202ENST00000434425 MRC2Q9UBG0 1479 aa9.06□□□□□ -0.96
RFC3-202ENST00000434425 TRHP20396 242 aaPredicted RBP9.04□□□□□ -0.96
RFC3-202ENST00000434425 WDR62O43379 1518 aa9.04□□□□□ -0.96
RFC3-202ENST00000434425 WIZO95785 1651 aa9.03□□□□□ -0.96
RFC3-202ENST00000434425 LHX8Q68G74 356 aa9.03□□□□□ -0.96
RFC3-202ENST00000434425 OSCARQ8IYS5 282 aa9.02□□□□□ -0.96
RFC3-202ENST00000434425 SPDYE4A6NLX3 237 aa9.01□□□□□ -0.97
RFC3-202ENST00000434425 CAPN15O75808 1086 aa9□□□□□ -0.97
RFC3-202ENST00000434425 POLA2Q14181 598 aa8.99□□□□□ -0.97
RFC3-202ENST00000434425 NPM2Q86SE8 214 aaKnown RBP8.99□□□□□ -0.97
RFC3-202ENST00000434425 FBXO3Q9UK99 471 aa8.99□□□□□ -0.97
RFC3-202ENST00000434425 CEP164Q9UPV0 1460 aa8.99□□□□□ -0.97
RFC3-202ENST00000434425 FANCD2Q9BXW9 1451 aa8.98□□□□□ -0.97
RFC3-202ENST00000434425 TMEM132AQ24JP5 1023 aa8.96□□□□□ -0.97
RFC3-202ENST00000434425 RBM42Q9BTD8 480 aaKnown RBP8.96□□□□□ -0.97
RFC3-202ENST00000434425 CFTRP13569 1480 aa8.94□□□□□ -0.98
RFC3-202ENST00000434425 HAX1O00165 279 aa8.93□□□□□ -0.98
RFC3-202ENST00000434425 PROM2Q8N271 834 aa8.93□□□□□ -0.98
RFC3-202ENST00000434425 URB2Q14146 1524 aaKnown RBP8.93□□□□□ -0.98
RFC3-202ENST00000434425 HAP1P54257 671 aaPredicted RBP8.92□□□□□ -0.98
RFC3-202ENST00000434425 FBLN2P98095 1184 aa8.9□□□□□ -0.98
RFC3-202ENST00000434425 ABCB7O75027 752 aa8.89□□□□□ -0.99
RFC3-202ENST00000434425 VSIG10Q8N0Z9 540 aa8.89□□□□□ -0.99
RFC3-202ENST00000434425 RSF1Q96T23 1441 aaPredicted RBP8.89□□□□□ -0.99
RFC3-202ENST00000434425 RIMBP3CA6NJZ7 1639 aa8.89□□□□□ -0.99
RFC3-202ENST00000434425 RIMBP3BA6NNM3 1639 aa8.89□□□□□ -0.99
RFC3-202ENST00000434425 RIMBP3Q9UFD9 1639 aa8.89□□□□□ -0.99
RFC3-202ENST00000434425 ZNF608Q9ULD9 1512 aaPredicted RBP8.87□□□□□ -0.99
RFC3-202ENST00000434425 CYB5RLQ6IPT4 315 aa8.85□□□□□ -0.99
RFC3-202ENST00000434425 TOP2AP11388 1531 aaKnown RBP8.85□□□□□ -0.99
RFC3-202ENST00000434425 ARHGEF11O15085 1522 aa8.83□□□□□ -1
RFC3-202ENST00000434425 VASPP50552 380 aaPredicted RBP8.83□□□□□ -1
RFC3-202ENST00000434425 C14orf37Q86TY3 774 aa8.83□□□□□ -1
RFC3-202ENST00000434425 IFT140Q96RY7 1462 aa8.82□□□□□ -1
RFC3-202ENST00000434425 PRDM2Q13029 1718 aa8.81□□□□□ -1
RFC3-202ENST00000434425 CCDC88BA6NC98 1476 aa8.81□□□□□ -1
RFC3-202ENST00000434425 PLEKHG5O94827 1062 aa8.81□□□□□ -1
RFC3-202ENST00000434425 IFNLR1Q8IU57 520 aaPredicted RBP8.81□□□□□ -1
RFC3-202ENST00000434425 TOPBP1Q92547 1522 aa8.79□□□□□ -1
RFC3-202ENST00000434425 AQRO60306 1485 aaKnown RBP eCLIP8.79□□□□□ -14e-6■■■■■ 31
RFC3-202ENST00000434425 EIF4G3O43432 1585 aaKnown RBP8.76□□□□□ -1.01
RFC3-202ENST00000434425 CHD1O14646 1710 aa8.75□□□□□ -1.01
RFC3-202ENST00000434425 TRIM26Q12899 539 aaPredicted RBP8.75□□□□□ -1.01
RFC3-202ENST00000434425 ARAP1Q96P48 1450 aa8.74□□□□□ -1.01
RFC3-202ENST00000434425 ABCC8Q09428 1581 aa8.74□□□□□ -1.01
RFC3-202ENST00000434425 TARBP1Q13395 1621 aaKnown RBP8.74□□□□□ -1.01
RFC3-202ENST00000434425 DNMBPQ6XZF7 1577 aa8.73□□□□□ -1.01
RFC3-202ENST00000434425 ZBTB12Q9Y330 459 aaPredicted RBP8.72□□□□□ -1.01
RFC3-202ENST00000434425 RAD54L2Q9Y4B4 1467 aa8.7□□□□□ -1.02
RFC3-202ENST00000434425 TDRD9Q8NDG6 1382 aaKnown RBP8.7□□□□□ -1.02
RFC3-202ENST00000434425 POLA1P09884 1462 aaPredicted RBP8.69□□□□□ -1.02
RFC3-202ENST00000434425 PIP4P2Q8N4L2 257 aa8.69□□□□□ -1.02
RFC3-202ENST00000434425 SOGA1O94964 1423 aa8.68□□□□□ -1.02
RFC3-202ENST00000434425 LOC105371045A0A1W2PR82 267 aa8.67□□□□□ -1.02
RFC3-202ENST00000434425 KDM2AQ9Y2K7 1162 aa8.67□□□□□ -1.02
RFC3-202ENST00000434425 PKD2Q13563 968 aa8.66□□□□□ -1.02
RFC3-202ENST00000434425 CHMP7Q8WUX9 453 aaPredicted RBP8.66□□□□□ -1.02
RFC3-202ENST00000434425 ZNF692Q9BU19 519 aaPredicted RBP8.65□□□□□ -1.02
RFC3-202ENST00000434425 HRCP23327 699 aa8.64□□□□□ -1.03
RFC3-202ENST00000434425 SNAPC4Q5SXM2 1469 aa8.64□□□□□ -1.03
RFC3-202ENST00000434425 BCL11AQ9H165 835 aa8.64□□□□□ -1.03
RFC3-202ENST00000434425 CLASP1Q7Z460 1538 aa8.63□□□□□ -1.03
RFC3-202ENST00000434425 SSUH2Q9Y2M2 353 aa8.62□□□□□ -1.03
RFC3-202ENST00000434425 EVX2Q03828 476 aa8.61□□□□□ -1.03
RFC3-202ENST00000434425 FGD5Q6ZNL6 1462 aa8.61□□□□□ -1.03
RFC3-202ENST00000434425 PCDH10Q9P2E7 1040 aa8.6□□□□□ -1.03
RFC3-202ENST00000434425 SYNJ1O43426 1573 aa8.59□□□□□ -1.03
RFC3-202ENST00000434425 CUX1P39880 1505 aa8.59□□□□□ -1.04
RFC3-202ENST00000434425 GRIN2BQ13224 1484 aa8.59□□□□□ -1.04
RFC3-202ENST00000434425 MAGI1Q96QZ7 1491 aaPredicted RBP8.59□□□□□ -1.04
RFC3-202ENST00000434425 SPDYE2BA6NHP3 402 aa8.58□□□□□ -1.04
RFC3-202ENST00000434425 POTEMA6NI47 508 aa8.58□□□□□ -1.04
RFC3-202ENST00000434425 SPDYE6P0CI01 402 aa8.58□□□□□ -1.04
RFC3-202ENST00000434425 UBTFP17480 764 aaKnown RBP8.58□□□□□ -1.04
RFC3-202ENST00000434425 SPDYE2Q495Y8 402 aa8.58□□□□□ -1.04
RFC3-202ENST00000434425 PDIA4P13667 645 aaKnown RBP8.57□□□□□ -1.04
RFC3-202ENST00000434425 SYNJ2O15056 1496 aa8.57□□□□□ -1.04
RFC3-202ENST00000434425 SUPT5HO00267 1087 aaKnown RBP8.57□□□□□ -1.04
RFC3-202ENST00000434425 WDR97A6NE52 1622 aa8.57□□□□□ -1.04
RFC3-202ENST00000434425 GAPVD1Q14C86 1478 aa8.56□□□□□ -1.04
RFC3-202ENST00000434425 SPOCK2Q92563 424 aa8.54□□□□□ -1.04
RFC3-202ENST00000434425 CDK11AQ9UQ88 783 aaPredicted RBP8.54□□□□□ -1.04
RFC3-202ENST00000434425 PBRM1Q86U86 1689 aa8.53□□□□□ -1.04
RFC3-202ENST00000434425 ERCC6L2Q5T890 1561 aa8.53□□□□□ -1.04
RFC3-202ENST00000434425 UBE2Q2Q8WVN8 375 aa8.52□□□□□ -1.05
RFC3-202ENST00000434425 STAG3Q9UJ98 1225 aa8.52□□□□□ -1.05
RFC3-202ENST00000434425 POTEGQ6S5H5 508 aa8.51□□□□□ -1.05
RFC3-202ENST00000434425 PLCD3Q8N3E9 789 aa8.51□□□□□ -1.05
RFC3-202ENST00000434425 MIER1Q8N108 512 aa8.5□□□□□ -1.05
RFC3-202ENST00000434425 CHMP4AQ9BY43 222 aa8.5□□□□□ -1.05
RFC3-202ENST00000434425 ABCA10Q8WWZ4 1543 aa8.49□□□□□ -1.05
RFC3-202ENST00000434425 ABCA5Q8WWZ7 1642 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms