RNA–Protein interactions for RNA: ENST00000432645.6

HDAC9-212, Transcript of histone deacetylase 9, humanhuman

TSL 1 (best) BASIC

Gene HDAC9, Length 3,099 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-212ENST00000432645 ATP1B4Q9UN42 357 aaPredicted RBP12.59□□□□□ -0.39
HDAC9-212ENST00000432645 WDR97A6NE52 1622 aa12.57□□□□□ -0.4
HDAC9-212ENST00000432645 MRC2Q9UBG0 1479 aa12.56□□□□□ -0.4
HDAC9-212ENST00000432645 AQRO60306 1485 aaKnown RBP eCLIP12.55□□□□□ -0.4
HDAC9-212ENST00000432645 ABCA5Q8WWZ7 1642 aa12.55□□□□□ -0.4
HDAC9-212ENST00000432645 CUL7Q14999 1698 aa12.55□□□□□ -0.4
HDAC9-212ENST00000432645 TARBP1Q13395 1621 aaKnown RBP12.53□□□□□ -0.4
HDAC9-212ENST00000432645 FHOD3Q2V2M9 1422 aa12.53□□□□□ -0.4
HDAC9-212ENST00000432645 ERCC6Q03468 1493 aa12.52□□□□□ -0.41
HDAC9-212ENST00000432645 BCL11AQ9H165 835 aa12.51□□□□□ -0.41
HDAC9-212ENST00000432645 ZNF608Q9ULD9 1512 aaPredicted RBP12.48□□□□□ -0.41
HDAC9-212ENST00000432645 ITGAEP38570 1179 aa12.48□□□□□ -0.41
HDAC9-212ENST00000432645 FHAD1B1AJZ9 1412 aa12.47□□□□□ -0.41
HDAC9-212ENST00000432645 CTTNBP2Q8WZ74 1663 aa12.46□□□□□ -0.41
HDAC9-212ENST00000432645 WDR62O43379 1518 aa12.45□□□□□ -0.42
HDAC9-212ENST00000432645 PCF11O94913 1555 aaKnown RBP12.44□□□□□ -0.42
HDAC9-212ENST00000432645 TIAM1Q13009 1591 aa12.44□□□□□ -0.42
HDAC9-212ENST00000432645 IFT140Q96RY7 1462 aa12.43□□□□□ -0.42
HDAC9-212ENST00000432645 EFCAB5A4FU69 1503 aa12.43□□□□□ -0.42
HDAC9-212ENST00000432645 PHF23Q9BUL5 403 aaPredicted RBP12.43□□□□□ -0.42
HDAC9-212ENST00000432645 GRIN2BQ13224 1484 aa12.43□□□□□ -0.42
HDAC9-212ENST00000432645 PBRM1Q86U86 1689 aa12.42□□□□□ -0.42
HDAC9-212ENST00000432645 LRRC9Q6ZRR7 1453 aa12.42□□□□□ -0.42
HDAC9-212ENST00000432645 CCNB3Q8WWL7 1395 aa12.41□□□□□ -0.42
HDAC9-212ENST00000432645 DAXXQ9UER7 740 aaPredicted RBP12.41□□□□□ -0.42
HDAC9-212ENST00000432645 RRBP1Q9P2E9 1410 aaKnown RBP12.41□□□□□ -0.42
HDAC9-212ENST00000432645 FMN1Q68DA7 1419 aa12.39□□□□□ -0.43
HDAC9-212ENST00000432645 CASKIN1Q8WXD9 1431 aa12.39□□□□□ -0.43
HDAC9-212ENST00000432645 PHLDB1Q86UU1 1377 aa12.39□□□□□ -0.43
HDAC9-212ENST00000432645 MAP3K1Q13233 1512 aa12.39□□□□□ -0.43
HDAC9-212ENST00000432645 ADAMTS12P58397 1594 aa12.38□□□□□ -0.43
HDAC9-212ENST00000432645 FBLN2P98095 1184 aa12.38□□□□□ -0.43
HDAC9-212ENST00000432645 FAM50AQ14320 339 aaKnown RBP12.38□□□□□ -0.43
HDAC9-212ENST00000432645 FYCO1Q9BQS8 1478 aa12.38□□□□□ -0.43
HDAC9-212ENST00000432645 SNAPC4Q5SXM2 1469 aa12.37□□□□□ -0.43
HDAC9-212ENST00000432645 ARID3CA6NKF2 412 aa12.36□□□□□ -0.43
HDAC9-212ENST00000432645 THOC2Q8NI27 1593 aaKnown RBP12.36□□□□□ -0.43
HDAC9-212ENST00000432645 SCAF1Q9H7N4 1312 aaKnown RBP12.36□□□□□ -0.43
HDAC9-212ENST00000432645 SAMD9Q5K651 1589 aa12.36□□□□□ -0.43
HDAC9-212ENST00000432645 EIF4G3O43432 1585 aaKnown RBP12.35□□□□□ -0.43
HDAC9-212ENST00000432645 CHMP7Q8WUX9 453 aaPredicted RBP12.34□□□□□ -0.43
HDAC9-212ENST00000432645 IQGAP2Q13576 1575 aa12.33□□□□□ -0.44
HDAC9-212ENST00000432645 CFAP43Q8NDM7 1665 aa12.33□□□□□ -0.44
HDAC9-212ENST00000432645 MTUS2Q5JR59 1369 aa12.33□□□□□ -0.44
HDAC9-212ENST00000432645 GRIN2AQ12879 1464 aa12.29□□□□□ -0.44
HDAC9-212ENST00000432645 DHX57Q6P158 1386 aaKnown RBP12.29□□□□□ -0.44
HDAC9-212ENST00000432645 KIAA0586Q9BVV6 1533 aa12.27□□□□□ -0.45
HDAC9-212ENST00000432645 LRRIQ1Q96JM4 1722 aa12.26□□□□□ -0.45
HDAC9-212ENST00000432645 RAB3GAP2Q9H2M9 1393 aa12.26□□□□□ -0.45
HDAC9-212ENST00000432645 MAGI1Q96QZ7 1491 aaPredicted RBP12.25□□□□□ -0.45
HDAC9-212ENST00000432645 SYNJ2O15056 1496 aa12.24□□□□□ -0.45
HDAC9-212ENST00000432645 UGGT2Q9NYU1 1516 aa12.24□□□□□ -0.45
HDAC9-212ENST00000432645 FGD6Q6ZV73 1430 aa12.23□□□□□ -0.45
HDAC9-212ENST00000432645 DISP1Q96F81 1524 aa12.23□□□□□ -0.45
HDAC9-212ENST00000432645 NCOA2Q15596 1464 aa12.23□□□□□ -0.45
HDAC9-212ENST00000432645 CDK13Q14004 1512 aaKnown RBP12.22□□□□□ -0.45
HDAC9-212ENST00000432645 MAGI3Q5TCQ9 1506 aa12.22□□□□□ -0.45
HDAC9-212ENST00000432645 SETD5Q9C0A6 1442 aa12.21□□□□□ -0.45
HDAC9-212ENST00000432645 CEP170Q5SW79 1584 aa12.21□□□□□ -0.45
HDAC9-212ENST00000432645 EPRSP07814 1512 aaKnown RBP12.21□□□□□ -0.45
HDAC9-212ENST00000432645 JPH4Q96JJ6 628 aa12.21□□□□□ -0.46
HDAC9-212ENST00000432645 DIEXFQ68CQ4 756 aaKnown RBP12.2□□□□□ -0.46
HDAC9-212ENST00000432645 ZNF316A6NFI3 1004 aaPredicted RBP12.2□□□□□ -0.46
HDAC9-212ENST00000432645 HECW1Q76N89 1606 aa12.2□□□□□ -0.46
HDAC9-212ENST00000432645 KIAA0556O60303 1618 aa12.19□□□□□ -0.46
HDAC9-212ENST00000432645 CCDC18Q5T9S5 1454 aa12.19□□□□□ -0.46
HDAC9-212ENST00000432645 CLSPNQ9HAW4 1339 aa12.19□□□□□ -0.46
HDAC9-212ENST00000432645 EHBP1L1Q8N3D4 1523 aa12.18□□□□□ -0.46
HDAC9-212ENST00000432645 MYOM3Q5VTT5 1437 aa12.18□□□□□ -0.46
HDAC9-212ENST00000432645 SUPT6HQ7KZ85 1726 aaKnown RBP12.16□□□□□ -0.46
HDAC9-212ENST00000432645 NUP160Q12769 1436 aa12.15□□□□□ -0.46
HDAC9-212ENST00000432645 PTPRKQ15262 1439 aa12.15□□□□□ -0.46
HDAC9-212ENST00000432645 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.15□□□□□ -0.46
HDAC9-212ENST00000432645 CHIC2Q9UKJ5 165 aa12.15□□□□□ -0.46
HDAC9-212ENST00000432645 NUP153P49790 1475 aaKnown RBP12.14□□□□□ -0.47
HDAC9-212ENST00000432645 PLB1Q6P1J6 1458 aa12.14□□□□□ -0.47
HDAC9-212ENST00000432645 CARMIL2Q6F5E8 1435 aa12.13□□□□□ -0.47
HDAC9-212ENST00000432645 NEUROD1Q13562 356 aa12.13□□□□□ -0.47
HDAC9-212ENST00000432645 SIN3AQ96ST3 1273 aa12.12□□□□□ -0.47
HDAC9-212ENST00000432645 RRP7BPQ9NSQ0 103 aa12.12□□□□□ -0.47
HDAC9-212ENST00000432645 ARHGEF11O15085 1522 aa12.11□□□□□ -0.47
HDAC9-212ENST00000432645 RAPGEF6Q8TEU7 1601 aa12.11□□□□□ -0.47
HDAC9-212ENST00000432645 CDK11AQ9UQ88 783 aaPredicted RBP12.11□□□□□ -0.47
HDAC9-212ENST00000432645 MAPKBP1O60336 1514 aa12.11□□□□□ -0.47
HDAC9-212ENST00000432645 PTPN23Q9H3S7 1636 aa12.1□□□□□ -0.47
HDAC9-212ENST00000432645 PRG4Q92954 1404 aaPredicted RBP12.09□□□□□ -0.47
HDAC9-212ENST00000432645 ZNF644Q9H582 1327 aaPredicted RBP12.09□□□□□ -0.47
HDAC9-212ENST00000432645 HFM1A2PYH4 1435 aa12.07□□□□□ -0.48
HDAC9-212ENST00000432645 NAIPQ13075 1403 aa12.06□□□□□ -0.48
HDAC9-212ENST00000432645 ZNF777Q9ULD5 760 aaPredicted RBP12.05□□□□□ -0.48
HDAC9-212ENST00000432645 MIA2Q96PC5 1412 aa12.04□□□□□ -0.48
HDAC9-212ENST00000432645 TCOF1Q13428 1488 aaKnown RBP12.04□□□□□ -0.48
HDAC9-212ENST00000432645 ACIN1Q9UKV3 1341 aaKnown RBP12.04□□□□□ -0.48
HDAC9-212ENST00000432645 CFDP1Q9UEE9 299 aaPredicted RBP12.03□□□□□ -0.48
HDAC9-212ENST00000432645 PTPRGP23470 1445 aa12.03□□□□□ -0.48
HDAC9-212ENST00000432645 TROQ12816 1431 aaPredicted RBP12.03□□□□□ -0.48
HDAC9-212ENST00000432645 PLEKHD1A6NEE1 506 aa12.02□□□□□ -0.48
HDAC9-212ENST00000432645 TRIM52Q96A61 297 aa12.02□□□□□ -0.48
HDAC9-212ENST00000432645 CHD1O14646 1710 aa12.02□□□□□ -0.48
HDAC9-212ENST00000432645 EIF5BO60841 1220 aaKnown RBP12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms