RNA–Protein interactions for RNA: ENST00000429411.5

HPS4-205, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 2

Gene HPS4, Length 3,492 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-205ENST00000429411 BCANQ96GW7 911 aa11.64□□□□□ -0.55
HPS4-205ENST00000429411 ZNF608Q9ULD9 1512 aaPredicted RBP11.64□□□□□ -0.55
HPS4-205ENST00000429411 KIF21AQ7Z4S6 1674 aa11.64□□□□□ -0.55
HPS4-205ENST00000429411 KANK4Q5T7N3 995 aaPredicted RBP11.63□□□□□ -0.55
HPS4-205ENST00000429411 TRHP20396 242 aaPredicted RBP11.63□□□□□ -0.55
HPS4-205ENST00000429411 DNAJC5Q9H3Z4 198 aa11.62□□□□□ -0.55
HPS4-205ENST00000429411 HIRIP3Q9BW71 556 aaPredicted RBP11.61□□□□□ -0.55
HPS4-205ENST00000429411 RAPGEF2Q9Y4G8 1499 aa11.61□□□□□ -0.55
HPS4-205ENST00000429411 TOPBP1Q92547 1522 aa11.6□□□□□ -0.55
HPS4-205ENST00000429411 BCL11AQ9H165 835 aa11.59□□□□□ -0.55
HPS4-205ENST00000429411 CUX2O14529 1486 aa11.59□□□□□ -0.55
HPS4-205ENST00000429411 FGD5Q6ZNL6 1462 aa11.58□□□□□ -0.56
HPS4-205ENST00000429411 PLEKHG5O94827 1062 aa11.58□□□□□ -0.56
HPS4-205ENST00000429411 VPS8Q8N3P4 1428 aa11.58□□□□□ -0.56
HPS4-205ENST00000429411 POLA1P09884 1462 aaPredicted RBP11.55□□□□□ -0.56
HPS4-205ENST00000429411 CNGB1Q14028 1251 aaPredicted RBP11.55□□□□□ -0.56
HPS4-205ENST00000429411 DDX10Q13206 875 aaKnown RBP11.54□□□□□ -0.56
HPS4-205ENST00000429411 SYNJ1O43426 1573 aa11.52□□□□□ -0.57
HPS4-205ENST00000429411 TIMELESSQ9UNS1 1208 aa11.51□□□□□ -0.57
HPS4-205ENST00000429411 CUX1P39880 1505 aa11.5□□□□□ -0.57
HPS4-205ENST00000429411 SIN3AQ96ST3 1273 aa11.5□□□□□ -0.57
HPS4-205ENST00000429411 NEFLP07196 543 aa11.48□□□□□ -0.57
HPS4-205ENST00000429411 IFT140Q96RY7 1462 aa11.47□□□□□ -0.57
HPS4-205ENST00000429411 KCNH8Q96L42 1107 aa11.47□□□□□ -0.57
HPS4-205ENST00000429411 TRIM52Q96A61 297 aa11.45□□□□□ -0.58
HPS4-205ENST00000429411 THOC2Q8NI27 1593 aaKnown RBP11.45□□□□□ -0.58
HPS4-205ENST00000429411 GAPVD1Q14C86 1478 aa11.45□□□□□ -0.58
HPS4-205ENST00000429411 KLHL34Q8N239 644 aa11.45□□□□□ -0.58
HPS4-205ENST00000429411 KIF27Q86VH2 1401 aa11.44□□□□□ -0.58
HPS4-205ENST00000429411 PRDM2Q13029 1718 aa11.43□□□□□ -0.58
HPS4-205ENST00000429411 WDR62O43379 1518 aa11.43□□□□□ -0.58
HPS4-205ENST00000429411 DHX57Q6P158 1386 aaKnown RBP11.43□□□□□ -0.58
HPS4-205ENST00000429411 SNAPC4Q5SXM2 1469 aa11.43□□□□□ -0.58
HPS4-205ENST00000429411 DNMBPQ6XZF7 1577 aa11.42□□□□□ -0.58
HPS4-205ENST00000429411 FKBP8Q14318 412 aa11.42□□□□□ -0.58
HPS4-205ENST00000429411 JPH4Q96JJ6 628 aa11.42□□□□□ -0.58
HPS4-205ENST00000429411 CCNB3Q8WWL7 1395 aa11.42□□□□□ -0.58
HPS4-205ENST00000429411 POLR3GLQ9BT43 218 aa11.41□□□□□ -0.58
HPS4-205ENST00000429411 KIF21BO75037 1637 aa11.41□□□□□ -0.58
HPS4-205ENST00000429411 TULP1O00294 542 aaPredicted RBP11.4□□□□□ -0.58
HPS4-205ENST00000429411 NPM1P06748 294 aaKnown RBP eCLIP11.4□□□□□ -0.58
HPS4-205ENST00000429411 SUPT16HQ9Y5B9 1047 aaKnown RBP11.4□□□□□ -0.58
HPS4-205ENST00000429411 CARMIL1Q5VZK9 1371 aa11.39□□□□□ -0.59
HPS4-205ENST00000429411 CHIC2Q9UKJ5 165 aa11.39□□□□□ -0.59
HPS4-205ENST00000429411 ANP32CO43423 234 aa11.38□□□□□ -0.59
HPS4-205ENST00000429411 RAB3GAP2Q9H2M9 1393 aa11.36□□□□□ -0.59
HPS4-205ENST00000429411 GRIN2BQ13224 1484 aa11.36□□□□□ -0.59
HPS4-205ENST00000429411 ARAP1Q96P48 1450 aa11.35□□□□□ -0.59
HPS4-205ENST00000429411 IGF1RP08069 1367 aa11.35□□□□□ -0.59
HPS4-205ENST00000429411 IRX6P78412 446 aaPredicted RBP11.33□□□□□ -0.6
HPS4-205ENST00000429411 CLSPNQ9HAW4 1339 aa11.32□□□□□ -0.6
HPS4-205ENST00000429411 TONSLQ96HA7 1378 aa11.32□□□□□ -0.6
HPS4-205ENST00000429411 BIVM-ERCC5R4GMW8 1640 aa11.31□□□□□ -0.6
HPS4-205ENST00000429411 RRP7BPQ9NSQ0 103 aa11.31□□□□□ -0.6
HPS4-205ENST00000429411 TOP2BQ02880 1626 aa11.31□□□□□ -0.6
HPS4-205ENST00000429411 ARXQ96QS3 562 aa11.3□□□□□ -0.6
HPS4-205ENST00000429411 MYT1LQ9UL68 1186 aa11.3□□□□□ -0.6
HPS4-205ENST00000429411 EIF4G3O43432 1585 aaKnown RBP11.3□□□□□ -0.6
HPS4-205ENST00000429411 SENP3-EIF4A1A0A087X0R7 540 aa11.29□□□□□ -0.6
HPS4-205ENST00000429411 ZNF326Q5BKZ1 582 aaKnown RBP11.29□□□□□ -0.6
HPS4-205ENST00000429411 HNRNPUQ00839 825 aaKnown RBP eCLIP11.28□□□□□ -0.6
HPS4-205ENST00000429411 MTUS2Q5JR59 1369 aa11.28□□□□□ -0.6
HPS4-205ENST00000429411 PODXL2Q9NZ53 605 aa11.26□□□□□ -0.61
HPS4-205ENST00000429411 SETD5Q9C0A6 1442 aa11.26□□□□□ -0.61
HPS4-205ENST00000429411 PRXQ9BXM0 1461 aa11.26□□□□□ -0.61
HPS4-205ENST00000429411 ABCA10Q8WWZ4 1543 aa11.25□□□□□ -0.61
HPS4-205ENST00000429411 FHOD3Q2V2M9 1422 aa11.25□□□□□ -0.61
HPS4-205ENST00000429411 PRG4Q92954 1404 aaPredicted RBP11.24□□□□□ -0.61
HPS4-205ENST00000429411 ARHGAP35Q9NRY4 1499 aa11.24□□□□□ -0.61
HPS4-205ENST00000429411 FHAD1B1AJZ9 1412 aa11.24□□□□□ -0.61
HPS4-205ENST00000429411 SYNJ2O15056 1496 aa11.23□□□□□ -0.61
HPS4-205ENST00000429411 PHLDB1Q86UU1 1377 aa11.23□□□□□ -0.61
HPS4-205ENST00000429411 FAM69CQ0P6D2 419 aa11.22□□□□□ -0.61
HPS4-205ENST00000429411 FAM9BQ8IZU0 186 aa11.22□□□□□ -0.61
HPS4-205ENST00000429411 TSHZ2Q9NRE2 1034 aa11.21□□□□□ -0.62
HPS4-205ENST00000429411 FOXD1Q16676 465 aa11.21□□□□□ -0.62
HPS4-205ENST00000429411 TARBP1Q13395 1621 aaKnown RBP11.2□□□□□ -0.62
HPS4-205ENST00000429411 GRIN2AQ12879 1464 aa11.2□□□□□ -0.62
HPS4-205ENST00000429411 ZNF777Q9ULD5 760 aaPredicted RBP11.19□□□□□ -0.62
HPS4-205ENST00000429411 AMER1Q5JTC6 1135 aaPredicted RBP11.19□□□□□ -0.62
HPS4-205ENST00000429411 MAGI1Q96QZ7 1491 aaPredicted RBP11.19□□□□□ -0.62
HPS4-205ENST00000429411 RRBP1Q9P2E9 1410 aaKnown RBP11.18□□□□□ -0.62
HPS4-205ENST00000429411 PPP1R15AO75807 674 aaPredicted RBP11.18□□□□□ -0.62
HPS4-205ENST00000429411 AEBP2Q6ZN18 517 aaPredicted RBP11.18□□□□□ -0.62
HPS4-205ENST00000429411 PTPRGP23470 1445 aa11.18□□□□□ -0.62
HPS4-205ENST00000429411 ERICH3Q5RHP9 1530 aa11.17□□□□□ -0.62
HPS4-205ENST00000429411 KCNA4P22459 653 aa11.15□□□□□ -0.62
HPS4-205ENST00000429411 ARHGEF11O15085 1522 aa11.15□□□□□ -0.62
HPS4-205ENST00000429411 CARMIL2Q6F5E8 1435 aa11.13□□□□□ -0.63
HPS4-205ENST00000429411 LRRC9Q6ZRR7 1453 aa11.12□□□□□ -0.63
HPS4-205ENST00000429411 MRS2Q9HD23 443 aa11.11□□□□□ -0.63
HPS4-205ENST00000429411 CDK11AQ9UQ88 783 aaPredicted RBP11.11□□□□□ -0.63
HPS4-205ENST00000429411 WDR97A6NE52 1622 aa11.1□□□□□ -0.63
HPS4-205ENST00000429411 EIF4G2P78344 907 aaKnown RBP eCLIP11.1□□□□□ -0.63
HPS4-205ENST00000429411 HSPA5P11021 654 aaKnown RBP11.1□□□□□ -0.63
HPS4-205ENST00000429411 CHD1O14646 1710 aa11.09□□□□□ -0.63
HPS4-205ENST00000429411 SALL2Q9Y467 1007 aaPredicted RBP11.09□□□□□ -0.63
HPS4-205ENST00000429411 ERCC6L2Q5T890 1561 aa11.08□□□□□ -0.63
HPS4-205ENST00000429411 HOMEZQ8IX15 550 aa11.08□□□□□ -0.64
HPS4-205ENST00000429411 SLC4A1APQ9BWU0 796 aaKnown RBP11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms