RNA–Protein interactions for RNA: ENST00000420720.5

RFX3-205, Transcript of regulatory factor X3, humanhuman

TSL 3

Gene RFX3, Length 492 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-205ENST00000420720 HECW2Q9P2P5 1572 aa13.2□□□□□ -0.3
RFX3-205ENST00000420720 FBXO41Q8TF61 875 aa13.18□□□□□ -0.3
RFX3-205ENST00000420720 SNAPC4Q5SXM2 1469 aa13.17□□□□□ -0.3
RFX3-205ENST00000420720 LMTK3Q96Q04 1460 aa13.14□□□□□ -0.31
RFX3-205ENST00000420720 DNMBPQ6XZF7 1577 aa13.13□□□□□ -0.31
RFX3-205ENST00000420720 CAPN15O75808 1086 aa13.13□□□□□ -0.31
RFX3-205ENST00000420720 DSG3P32926 999 aa13.13□□□□□ -0.31
RFX3-205ENST00000420720 TDRD9Q8NDG6 1382 aaKnown RBP13.1□□□□□ -0.31
RFX3-205ENST00000420720 CHMP7Q8WUX9 453 aaPredicted RBP13.1□□□□□ -0.31
RFX3-205ENST00000420720 ABCC8Q09428 1581 aa13.1□□□□□ -0.31
RFX3-205ENST00000420720 POLA1P09884 1462 aaPredicted RBP13.1□□□□□ -0.31
RFX3-205ENST00000420720 KDM6BO15054 1643 aa13.08□□□□□ -0.32
RFX3-205ENST00000420720 RAD54L2Q9Y4B4 1467 aa13.08□□□□□ -0.32
RFX3-205ENST00000420720 ADGRL1O94910 1474 aa13.06□□□□□ -0.32
RFX3-205ENST00000420720 MAGI1Q96QZ7 1491 aaPredicted RBP13.05□□□□□ -0.32
RFX3-205ENST00000420720 SOCS7O14512 581 aa13.05□□□□□ -0.32
RFX3-205ENST00000420720 ILDR2Q71H61 639 aa13.05□□□□□ -0.32
RFX3-205ENST00000420720 SYNJ2O15056 1496 aa13.04□□□□□ -0.32
RFX3-205ENST00000420720 ABCC10Q5T3U5 1492 aa13.02□□□□□ -0.33
RFX3-205ENST00000420720 FAM69CQ0P6D2 419 aa13□□□□□ -0.33
RFX3-205ENST00000420720 DIP2BQ9P265 1576 aa12.98□□□□□ -0.33
RFX3-205ENST00000420720 WDR97A6NE52 1622 aa12.98□□□□□ -0.33
RFX3-205ENST00000420720 SOGA1O94964 1423 aa12.97□□□□□ -0.33
RFX3-205ENST00000420720 CEP170Q5SW79 1584 aa12.97□□□□□ -0.33
RFX3-205ENST00000420720 GRIN2BQ13224 1484 aa12.97□□□□□ -0.33
RFX3-205ENST00000420720 MAPKBP1O60336 1514 aa12.91□□□□□ -0.34
RFX3-205ENST00000420720 FGD5Q6ZNL6 1462 aa12.91□□□□□ -0.34
RFX3-205ENST00000420720 ABCB7O75027 752 aa12.9□□□□□ -0.34
RFX3-205ENST00000420720 TSPOAP1O95153 1857 aa12.9□□□□□ -0.34
RFX3-205ENST00000420720 SHROOM2Q13796 1616 aa12.9□□□□□ -0.34
RFX3-205ENST00000420720 SUPT5HO00267 1087 aaKnown RBP12.88□□□□□ -0.35
RFX3-205ENST00000420720 ZNF219Q9P2Y4 722 aaPredicted RBP12.88□□□□□ -0.35
RFX3-205ENST00000420720 PBRM1Q86U86 1689 aa12.88□□□□□ -0.35
RFX3-205ENST00000420720 CUX1P39880 1505 aa12.87□□□□□ -0.35
RFX3-205ENST00000420720 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.86□□□□□ -0.35
RFX3-205ENST00000420720 HNRNPUL2Q1KMD3 747 aaKnown RBP12.86□□□□□ -0.35
RFX3-205ENST00000420720 DISP3Q9P2K9 1392 aa12.85□□□□□ -0.35
RFX3-205ENST00000420720 SAMD1Q6SPF0 538 aaPredicted RBP12.85□□□□□ -0.35
RFX3-205ENST00000420720 APLP2Q06481 763 aa12.84□□□□□ -0.35
RFX3-205ENST00000420720 NUP160Q12769 1436 aa12.83□□□□□ -0.36
RFX3-205ENST00000420720 GRIN2AQ12879 1464 aa12.83□□□□□ -0.36
RFX3-205ENST00000420720 SLC4A1APQ9BWU0 796 aaKnown RBP12.81□□□□□ -0.36
RFX3-205ENST00000420720 MYCNP04198 464 aaPredicted RBP12.8□□□□□ -0.36
RFX3-205ENST00000420720 ADCY10Q96PN6 1610 aa12.79□□□□□ -0.36
RFX3-205ENST00000420720 PPRC1Q5VV67 1664 aaKnown RBP12.78□□□□□ -0.36
RFX3-205ENST00000420720 COL17A1Q9UMD9 1497 aaPredicted RBP12.78□□□□□ -0.36
RFX3-205ENST00000420720 ABCA5Q8WWZ7 1642 aa12.76□□□□□ -0.37
RFX3-205ENST00000420720 PRG4Q92954 1404 aaPredicted RBP12.75□□□□□ -0.37
RFX3-205ENST00000420720 ABCA10Q8WWZ4 1543 aa12.73□□□□□ -0.37
RFX3-205ENST00000420720 NPM1P06748 294 aaKnown RBP eCLIP12.73□□□□□ -0.37
RFX3-205ENST00000420720 ADAMTS12P58397 1594 aa12.73□□□□□ -0.37
RFX3-205ENST00000420720 SPATA31D1Q6ZQQ2 1576 aa12.7□□□□□ -0.38
RFX3-205ENST00000420720 WRNQ14191 1432 aaPredicted RBP eCLIP12.7□□□□□ -0.38
RFX3-205ENST00000420720 TOP2BQ02880 1626 aa12.69□□□□□ -0.38
RFX3-205ENST00000420720 FOXD4L1Q9NU39 408 aa12.68□□□□□ -0.38
RFX3-205ENST00000420720 POTEHQ6S545 545 aa12.67□□□□□ -0.38
RFX3-205ENST00000420720 ZBTB22O15209 634 aa12.64□□□□□ -0.39
RFX3-205ENST00000420720 JPH4Q96JJ6 628 aa12.64□□□□□ -0.39
RFX3-205ENST00000420720 ATF5Q9Y2D1 282 aaPredicted RBP12.64□□□□□ -0.39
RFX3-205ENST00000420720 GLI2P10070 1586 aa12.62□□□□□ -0.39
RFX3-205ENST00000420720 FHAD1B1AJZ9 1412 aa12.62□□□□□ -0.39
RFX3-205ENST00000420720 CERKQ8TCT0 537 aa12.6□□□□□ -0.39
RFX3-205ENST00000420720 BIVM-ERCC5R4GMW8 1640 aa12.59□□□□□ -0.39
RFX3-205ENST00000420720 RUSC2Q8N2Y8 1516 aa12.58□□□□□ -0.4
RFX3-205ENST00000420720 POLA2Q14181 598 aa12.58□□□□□ -0.4
RFX3-205ENST00000420720 PCF11O94913 1555 aaKnown RBP12.57□□□□□ -0.4
RFX3-205ENST00000420720 ERICH3Q5RHP9 1530 aa12.56□□□□□ -0.4
RFX3-205ENST00000420720 PTPRMP28827 1452 aa12.55□□□□□ -0.4
RFX3-205ENST00000420720 KIF21BO75037 1637 aa12.55□□□□□ -0.4
RFX3-205ENST00000420720 MAP3K4Q9Y6R4 1608 aa12.55□□□□□ -0.4
RFX3-205ENST00000420720 ASXL2Q76L83 1435 aa12.54□□□□□ -0.4
RFX3-205ENST00000420720 PLB1Q6P1J6 1458 aa12.51□□□□□ -0.41
RFX3-205ENST00000420720 ADAMTSL3P82987 1691 aa12.5□□□□□ -0.41
RFX3-205ENST00000420720 ABCC2Q92887 1545 aa12.49□□□□□ -0.41
RFX3-205ENST00000420720 TEX14Q8IWB6 1497 aa12.49□□□□□ -0.41
RFX3-205ENST00000420720 EPRSP07814 1512 aaKnown RBP12.48□□□□□ -0.41
RFX3-205ENST00000420720 CUL7Q14999 1698 aa12.46□□□□□ -0.41
RFX3-205ENST00000420720 IGF1RP08069 1367 aa12.45□□□□□ -0.42
RFX3-205ENST00000420720 HSPA2P54652 639 aa12.45□□□□□ -0.42
RFX3-205ENST00000420720 KIF27Q86VH2 1401 aa12.43□□□□□ -0.42
RFX3-205ENST00000420720 RBM42Q9BTD8 480 aaKnown RBP12.41□□□□□ -0.42
RFX3-205ENST00000420720 PTPRGP23470 1445 aa12.4□□□□□ -0.42
RFX3-205ENST00000420720 KIAA0586Q9BVV6 1533 aa12.4□□□□□ -0.42
RFX3-205ENST00000420720 MADDQ8WXG6 1647 aa12.4□□□□□ -0.42
RFX3-205ENST00000420720 TTBK1Q5TCY1 1321 aaPredicted RBP12.38□□□□□ -0.43
RFX3-205ENST00000420720 CARMIL1Q5VZK9 1371 aa12.38□□□□□ -0.43
RFX3-205ENST00000420720 UHRF1BP1LA0JNW5 1464 aa12.36□□□□□ -0.43
RFX3-205ENST00000420720 BCORL1Q5H9F3 1711 aa12.35□□□□□ -0.43
RFX3-205ENST00000420720 KDM5BQ9UGL1 1544 aa12.33□□□□□ -0.44
RFX3-205ENST00000420720 MAGI3Q5TCQ9 1506 aa12.32□□□□□ -0.44
RFX3-205ENST00000420720 ZCCHC11Q5TAX3 1644 aaKnown RBP12.31□□□□□ -0.44
RFX3-205ENST00000420720 TNIKQ9UKE5 1360 aa12.3□□□□□ -0.44
RFX3-205ENST00000420720 RIMS1Q86UR5 1692 aaKnown RBP12.3□□□□□ -0.44
RFX3-205ENST00000420720 CARMIL2Q6F5E8 1435 aa12.29□□□□□ -0.44
RFX3-205ENST00000420720 UACAQ9BZF9 1416 aa12.29□□□□□ -0.44
RFX3-205ENST00000420720 CD109Q6YHK3 1445 aa12.27□□□□□ -0.45
RFX3-205ENST00000420720 CFAP43Q8NDM7 1665 aa12.26□□□□□ -0.45
RFX3-205ENST00000420720 WDR7Q9Y4E6 1490 aa12.26□□□□□ -0.45
RFX3-205ENST00000420720 ARAP3Q8WWN8 1544 aa12.26□□□□□ -0.45
RFX3-205ENST00000420720 ZBTB12Q9Y330 459 aaPredicted RBP12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms