RNA–Protein interactions for RNA: ENST00000419533.1

UBR4-206, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 5

Gene UBR4, Length 5,583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-206ENST00000419533 NEFMP07197 916 aa11.77□□□□□ -0.53
UBR4-206ENST00000419533 GOLGA3Q08378 1498 aa11.77□□□□□ -0.53
UBR4-206ENST00000419533 FGD5Q6ZNL6 1462 aa11.77□□□□□ -0.53
UBR4-206ENST00000419533 KCNH8Q96L42 1107 aa11.76□□□□□ -0.53
UBR4-206ENST00000419533 ANP32CO43423 234 aa11.76□□□□□ -0.53
UBR4-206ENST00000419533 GAPVD1Q14C86 1478 aa11.75□□□□□ -0.53
UBR4-206ENST00000419533 ZBTB47Q9UFB7 747 aaPredicted RBP11.74□□□□□ -0.53
UBR4-206ENST00000419533 STAG3Q9UJ98 1225 aa11.73□□□□□ -0.53
UBR4-206ENST00000419533 GRIN2BQ13224 1484 aa11.72□□□□□ -0.53
UBR4-206ENST00000419533 TOPBP1Q92547 1522 aa11.71□□□□□ -0.53
UBR4-206ENST00000419533 SLC24A1O60721 1099 aa11.71□□□□□ -0.53
UBR4-206ENST00000419533 CYB5RLQ6IPT4 315 aa11.71□□□□□ -0.54
UBR4-206ENST00000419533 ZNF316A6NFI3 1004 aaPredicted RBP11.7□□□□□ -0.54
UBR4-206ENST00000419533 DNMBPQ6XZF7 1577 aa11.7□□□□□ -0.54
UBR4-206ENST00000419533 JPH4Q96JJ6 628 aa11.69□□□□□ -0.54
UBR4-206ENST00000419533 RAD54L2Q9Y4B4 1467 aa11.69□□□□□ -0.54
UBR4-206ENST00000419533 AQRO60306 1485 aaKnown RBP eCLIP11.69□□□□□ -0.544e-7■■■■■ 31.1
UBR4-206ENST00000419533 MTUS2Q5JR59 1369 aa11.68□□□□□ -0.54
UBR4-206ENST00000419533 CHGAP10645 457 aaKnown RBP11.67□□□□□ -0.54
UBR4-206ENST00000419533 RAPGEF2Q9Y4G8 1499 aa11.67□□□□□ -0.54
UBR4-206ENST00000419533 CLIP1P30622 1438 aa11.66□□□□□ -0.54
UBR4-206ENST00000419533 FHAD1B1AJZ9 1412 aa11.65□□□□□ -0.54
UBR4-206ENST00000419533 CANXP27824 592 aaKnown RBP11.64□□□□□ -0.55
UBR4-206ENST00000419533 ARID4BQ4LE39 1312 aaPredicted RBP11.64□□□□□ -0.55
UBR4-206ENST00000419533 TSPY4P0CV99 314 aa11.64□□□□□ -0.55
UBR4-206ENST00000419533 TSPY10P0CW01 314 aa11.64□□□□□ -0.55
UBR4-206ENST00000419533 PLPPR3Q6T4P5 718 aa11.64□□□□□ -0.55
UBR4-206ENST00000419533 GTF3C3Q9Y5Q9 886 aa11.61□□□□□ -0.55
UBR4-206ENST00000419533 POLA1P09884 1462 aaPredicted RBP11.61□□□□□ -0.55
UBR4-206ENST00000419533 PTPRGP23470 1445 aa11.6□□□□□ -0.55
UBR4-206ENST00000419533 TONSLQ96HA7 1378 aa11.58□□□□□ -0.56
UBR4-206ENST00000419533 TNIKQ9UKE5 1360 aa11.57□□□□□ -0.56
UBR4-206ENST00000419533 SNAPC4Q5SXM2 1469 aa11.57□□□□□ -0.56
UBR4-206ENST00000419533 RTL5Q5HYW3 569 aaPredicted RBP11.57□□□□□ -0.56
UBR4-206ENST00000419533 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.56□□□□□ -0.562e-7■■■□□ 17.7
UBR4-206ENST00000419533 FMN1Q68DA7 1419 aa11.55□□□□□ -0.56
UBR4-206ENST00000419533 CFDP1Q9UEE9 299 aaPredicted RBP11.54□□□□□ -0.56
UBR4-206ENST00000419533 URB2Q14146 1524 aaKnown RBP11.54□□□□□ -0.56
UBR4-206ENST00000419533 MAGI1Q96QZ7 1491 aaPredicted RBP11.53□□□□□ -0.56
UBR4-206ENST00000419533 CUX1P39880 1505 aa11.53□□□□□ -0.56
UBR4-206ENST00000419533 CHIC2Q9UKJ5 165 aa11.53□□□□□ -0.56
UBR4-206ENST00000419533 ACIN1Q9UKV3 1341 aaKnown RBP11.53□□□□□ -0.56
UBR4-206ENST00000419533 IGF1RP08069 1367 aa11.52□□□□□ -0.56
UBR4-206ENST00000419533 TOP2BQ02880 1626 aa11.52□□□□□ -0.57
UBR4-206ENST00000419533 SYNJ2O15056 1496 aa11.5□□□□□ -0.57
UBR4-206ENST00000419533 SYNJ1O43426 1573 aa11.5□□□□□ -0.57
UBR4-206ENST00000419533 ABCA10Q8WWZ4 1543 aa11.5□□□□□ -0.57
UBR4-206ENST00000419533 CCNB3Q8WWL7 1395 aa11.5□□□□□ -0.57
UBR4-206ENST00000419533 CEP162Q5TB80 1403 aa11.49□□□□□ -0.57
UBR4-206ENST00000419533 EFCAB2Q5VUJ9 269 aa11.49□□□□□ -0.57
UBR4-206ENST00000419533 PRG4Q92954 1404 aaPredicted RBP11.48□□□□□ -0.57
UBR4-206ENST00000419533 BCL11AQ9H165 835 aa11.48□□□□□ -0.57
UBR4-206ENST00000419533 AEBP2Q6ZN18 517 aaPredicted RBP11.48□□□□□ -0.57
UBR4-206ENST00000419533 FAM69CQ0P6D2 419 aa11.47□□□□□ -0.57
UBR4-206ENST00000419533 WDR62O43379 1518 aa11.47□□□□□ -0.57
UBR4-206ENST00000419533 KIF21AQ7Z4S6 1674 aa11.46□□□□□ -0.58
UBR4-206ENST00000419533 PPP1R15AO75807 674 aaPredicted RBP11.43□□□□□ -0.58
UBR4-206ENST00000419533 ERICH3Q5RHP9 1530 aa11.42□□□□□ -0.58
UBR4-206ENST00000419533 KDM2AQ9Y2K7 1162 aa11.4□□□□□ -0.58
UBR4-206ENST00000419533 SCAF1Q9H7N4 1312 aaKnown RBP11.4□□□□□ -0.58
UBR4-206ENST00000419533 ZNF608Q9ULD9 1512 aaPredicted RBP11.4□□□□□ -0.58
UBR4-206ENST00000419533 GRIN2AQ12879 1464 aa11.39□□□□□ -0.59
UBR4-206ENST00000419533 KIAA0586Q9BVV6 1533 aa11.39□□□□□ -0.59
UBR4-206ENST00000419533 FHOD3Q2V2M9 1422 aa11.39□□□□□ -0.59
UBR4-206ENST00000419533 CUL7Q14999 1698 aa11.38□□□□□ -0.59
UBR4-206ENST00000419533 CCDC18Q5T9S5 1454 aa11.37□□□□□ -0.59
UBR4-206ENST00000419533 KANK1Q14678 1352 aa11.37□□□□□ -0.59
UBR4-206ENST00000419533 MLECQ14165 292 aa11.36□□□□□ -0.59
UBR4-206ENST00000419533 C14orf37Q86TY3 774 aa11.36□□□□□ -0.59
UBR4-206ENST00000419533 WDR43Q15061 677 aaKnown RBP eCLIP11.36□□□□□ -0.595e-6■■□□□ 13.2
UBR4-206ENST00000419533 RRP7BPQ9NSQ0 103 aa11.35□□□□□ -0.59
UBR4-206ENST00000419533 PRDM2Q13029 1718 aa11.35□□□□□ -0.59
UBR4-206ENST00000419533 RSPH4AQ5TD94 716 aa11.35□□□□□ -0.59
UBR4-206ENST00000419533 TMC1Q8TDI8 760 aa11.35□□□□□ -0.59
UBR4-206ENST00000419533 DDX10Q13206 875 aaKnown RBP11.33□□□□□ -0.6
UBR4-206ENST00000419533 WDR97A6NE52 1622 aa11.32□□□□□ -0.6
UBR4-206ENST00000419533 RUSC2Q8N2Y8 1516 aa11.32□□□□□ -0.6
UBR4-206ENST00000419533 BIVM-ERCC5R4GMW8 1640 aa11.32□□□□□ -0.6
UBR4-206ENST00000419533 FAM9BQ8IZU0 186 aa11.32□□□□□ -0.6
UBR4-206ENST00000419533 HDGFP51858 240 aaKnown RBP11.32□□□□□ -0.6
UBR4-206ENST00000419533 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.31□□□□□ -0.6
UBR4-206ENST00000419533 NPM2Q86SE8 214 aaKnown RBP11.31□□□□□ -0.6
UBR4-206ENST00000419533 HNRNPUQ00839 825 aaKnown RBP eCLIP11.3□□□□□ -0.6
UBR4-206ENST00000419533 ANP32AP39687 249 aaKnown RBP11.29□□□□□ -0.6
UBR4-206ENST00000419533 VPS8Q8N3P4 1428 aa11.29□□□□□ -0.6
UBR4-206ENST00000419533 A0A0G2JS52 829 aa11.29□□□□□ -0.6
UBR4-206ENST00000419533 ZBTB7CA1YPR0 619 aa11.29□□□□□ -0.6
UBR4-206ENST00000419533 SPAG9O60271 1321 aaKnown RBP11.29□□□□□ -0.6
UBR4-206ENST00000419533 IQGAP2Q13576 1575 aa11.29□□□□□ -0.6
UBR4-206ENST00000419533 ARHGAP35Q9NRY4 1499 aa11.28□□□□□ -0.6
UBR4-206ENST00000419533 UACAQ9BZF9 1416 aa11.28□□□□□ -0.6
UBR4-206ENST00000419533 EIF4G2P78344 907 aaKnown RBP eCLIP11.28□□□□□ -0.6
UBR4-206ENST00000419533 EIF4G3O43432 1585 aaKnown RBP11.28□□□□□ -0.6
UBR4-206ENST00000419533 HAP1P54257 671 aaPredicted RBP11.28□□□□□ -0.6
UBR4-206ENST00000419533 UPF2Q9HAU5 1272 aaKnown RBP11.27□□□□□ -0.6
UBR4-206ENST00000419533 CDCA8Q53HL2 280 aa11.27□□□□□ -0.61
UBR4-206ENST00000419533 EFCAB5A4FU69 1503 aa11.27□□□□□ -0.61
UBR4-206ENST00000419533 SALL2Q9Y467 1007 aaPredicted RBP11.26□□□□□ -0.61
UBR4-206ENST00000419533 GGT6Q6P531 493 aa11.26□□□□□ -0.61
UBR4-206ENST00000419533 RGL3Q3MIN7 710 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms