RNA–Protein interactions for RNA: ENST00000417495.7

SP140-204, Transcript of SP140 nuclear body protein, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SP140, Length 2,895 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SP140-204ENST00000417495 TSHZ2Q9NRE2 1034 aa13.43□□□□□ -0.26
SP140-204ENST00000417495 PKD2Q13563 968 aa13.42□□□□□ -0.26
SP140-204ENST00000417495 PAXIP1Q6ZW49 1069 aaPredicted RBP13.41□□□□□ -0.26
SP140-204ENST00000417495 CFAP44Q96MT7 982 aa13.4□□□□□ -0.26
SP140-204ENST00000417495 NPM2Q86SE8 214 aaKnown RBP13.37□□□□□ -0.27
SP140-204ENST00000417495 PLEKHG5O94827 1062 aa13.35□□□□□ -0.27
SP140-204ENST00000417495 CADPSQ9ULU8 1353 aa13.34□□□□□ -0.27
SP140-204ENST00000417495 LAMC3Q9Y6N6 1575 aa13.33□□□□□ -0.27
SP140-204ENST00000417495 ERICH3Q5RHP9 1530 aa13.33□□□□□ -0.28
SP140-204ENST00000417495 TNIKQ9UKE5 1360 aa13.33□□□□□ -0.28
SP140-204ENST00000417495 CEP164Q9UPV0 1460 aa13.31□□□□□ -0.28
SP140-204ENST00000417495 GOLGA3Q08378 1498 aa13.31□□□□□ -0.28
SP140-204ENST00000417495 CUX1P39880 1505 aa13.31□□□□□ -0.28
SP140-204ENST00000417495 CNKSR2Q8WXI2 1034 aa13.3□□□□□ -0.28
SP140-204ENST00000417495 SLC4A2P04920 1241 aa13.3□□□□□ -0.28
SP140-204ENST00000417495 SOGA1O94964 1423 aa13.26□□□□□ -0.29
SP140-204ENST00000417495 TRHP20396 242 aaPredicted RBP13.25□□□□□ -0.29
SP140-204ENST00000417495 LOC105371045A0A1W2PR82 267 aa13.24□□□□□ -0.29
SP140-204ENST00000417495 ZEB1P37275 1124 aaPredicted RBP13.24□□□□□ -0.29
SP140-204ENST00000417495 NEUROD1Q13562 356 aa13.24□□□□□ -0.29
SP140-204ENST00000417495 IFNLR1Q8IU57 520 aaPredicted RBP13.24□□□□□ -0.29
SP140-204ENST00000417495 DNMBPQ6XZF7 1577 aa13.24□□□□□ -0.29
SP140-204ENST00000417495 PRXQ9BXM0 1461 aa13.22□□□□□ -0.29
SP140-204ENST00000417495 PIAS4Q8N2W9 510 aaPredicted RBP13.19□□□□□ -0.3
SP140-204ENST00000417495 ANO8Q9HCE9 1232 aaPredicted RBP13.18□□□□□ -0.3
SP140-204ENST00000417495 KIF27Q86VH2 1401 aa13.17□□□□□ -0.3
SP140-204ENST00000417495 RUSC2Q8N2Y8 1516 aa13.16□□□□□ -0.3
SP140-204ENST00000417495 WDR97A6NE52 1622 aa13.16□□□□□ -0.3
SP140-204ENST00000417495 FANCD2Q9BXW9 1451 aa13.16□□□□□ -0.3
SP140-204ENST00000417495 CEP162Q5TB80 1403 aa13.15□□□□□ -0.3
SP140-204ENST00000417495 NBR1Q14596 966 aa13.13□□□□□ -0.31
SP140-204ENST00000417495 ATF5Q9Y2D1 282 aaPredicted RBP13.12□□□□□ -0.31
SP140-204ENST00000417495 ABCA10Q8WWZ4 1543 aa13.12□□□□□ -0.31
SP140-204ENST00000417495 PKNOX2Q96KN3 472 aa13.12□□□□□ -0.31
SP140-204ENST00000417495 PCGF6Q9BYE7 350 aa13.11□□□□□ -0.31
SP140-204ENST00000417495 CUL7Q14999 1698 aa13.1□□□□□ -0.31
SP140-204ENST00000417495 PDS5BQ9NTI5 1447 aa13.09□□□□□ -0.31
SP140-204ENST00000417495 TOPBP1Q92547 1522 aa13.09□□□□□ -0.31
SP140-204ENST00000417495 FGD5Q6ZNL6 1462 aa13.08□□□□□ -0.32
SP140-204ENST00000417495 BBXQ8WY36 941 aaPredicted RBP13.06□□□□□ -0.32
SP140-204ENST00000417495 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.05□□□□□ -0.32
SP140-204ENST00000417495 RAPGEF2Q9Y4G8 1499 aa13.04□□□□□ -0.32
SP140-204ENST00000417495 ABCA5Q8WWZ7 1642 aa13.03□□□□□ -0.32
SP140-204ENST00000417495 VASPP50552 380 aaPredicted RBP13.03□□□□□ -0.32
SP140-204ENST00000417495 MAPK8IP2Q13387 824 aaPredicted RBP13.01□□□□□ -0.33
SP140-204ENST00000417495 VPS8Q8N3P4 1428 aa13.01□□□□□ -0.33
SP140-204ENST00000417495 POLA1P09884 1462 aaPredicted RBP13□□□□□ -0.33
SP140-204ENST00000417495 MAP3K1Q13233 1512 aa13□□□□□ -0.33
SP140-204ENST00000417495 KIF21AQ7Z4S6 1674 aa12.99□□□□□ -0.33
SP140-204ENST00000417495 URB2Q14146 1524 aaKnown RBP12.99□□□□□ -0.33
SP140-204ENST00000417495 CLIP1P30622 1438 aa12.99□□□□□ -0.33
SP140-204ENST00000417495 DNAJC5BQ9UF47 199 aa12.99□□□□□ -0.33
SP140-204ENST00000417495 IGF1RP08069 1367 aa12.98□□□□□ -0.33
SP140-204ENST00000417495 ERICH6BQ5W0A0 696 aa12.98□□□□□ -0.33
SP140-204ENST00000417495 CUX2O14529 1486 aa12.98□□□□□ -0.33
SP140-204ENST00000417495 TARBP1Q13395 1621 aaKnown RBP12.97□□□□□ -0.33
SP140-204ENST00000417495 EFCAB5A4FU69 1503 aa12.95□□□□□ -0.34
SP140-204ENST00000417495 NESP48681 1621 aa12.94□□□□□ -0.34
SP140-204ENST00000417495 ATXN8OSP0DMR3 200 aa12.94□□□□□ -0.34
SP140-204ENST00000417495 WDR62O43379 1518 aa12.94□□□□□ -0.34
SP140-204ENST00000417495 CTTNBP2Q8WZ74 1663 aa12.94□□□□□ -0.34
SP140-204ENST00000417495 MRC2Q9UBG0 1479 aa12.93□□□□□ -0.34
SP140-204ENST00000417495 NEFLP07196 543 aa12.91□□□□□ -0.34
SP140-204ENST00000417495 ARAP1Q96P48 1450 aa12.91□□□□□ -0.34
SP140-204ENST00000417495 RGL2O15211 777 aa12.91□□□□□ -0.34
SP140-204ENST00000417495 SPRYD3Q8NCJ5 442 aa12.91□□□□□ -0.34
SP140-204ENST00000417495 DNAJC5Q9H3Z4 198 aa12.91□□□□□ -0.34
SP140-204ENST00000417495 CARMIL1Q5VZK9 1371 aa12.89□□□□□ -0.35
SP140-204ENST00000417495 MYT1LQ9UL68 1186 aa12.89□□□□□ -0.35
SP140-204ENST00000417495 AQRO60306 1485 aaKnown RBP eCLIP12.88□□□□□ -0.35
SP140-204ENST00000417495 PBRM1Q86U86 1689 aa12.87□□□□□ -0.35
SP140-204ENST00000417495 BRPF1P55201 1214 aaPredicted RBP12.87□□□□□ -0.35
SP140-204ENST00000417495 FBXO3Q9UK99 471 aa12.86□□□□□ -0.35
SP140-204ENST00000417495 ARID3AQ99856 593 aa12.86□□□□□ -0.35
SP140-204ENST00000417495 ARHGAP35Q9NRY4 1499 aa12.85□□□□□ -0.35
SP140-204ENST00000417495 IFT140Q96RY7 1462 aa12.85□□□□□ -0.35
SP140-204ENST00000417495 SALL2Q9Y467 1007 aaPredicted RBP12.84□□□□□ -0.35
SP140-204ENST00000417495 SAMD9Q5K651 1589 aa12.83□□□□□ -0.35
SP140-204ENST00000417495 MYCNP04198 464 aaPredicted RBP12.83□□□□□ -0.36
SP140-204ENST00000417495 PDIA4P13667 645 aaKnown RBP12.83□□□□□ -0.36
SP140-204ENST00000417495 CFAP43Q8NDM7 1665 aa12.83□□□□□ -0.36
SP140-204ENST00000417495 THOC2Q8NI27 1593 aaKnown RBP12.83□□□□□ -0.36
SP140-204ENST00000417495 GAPVD1Q14C86 1478 aa12.82□□□□□ -0.36
SP140-204ENST00000417495 RAD54L2Q9Y4B4 1467 aa12.82□□□□□ -0.36
SP140-204ENST00000417495 ADAMTS12P58397 1594 aa12.81□□□□□ -0.36
SP140-204ENST00000417495 FHAD1B1AJZ9 1412 aa12.8□□□□□ -0.36
SP140-204ENST00000417495 C1orf115Q9H7X2 142 aa12.79□□□□□ -0.36
SP140-204ENST00000417495 PDE4CQ08493 712 aa12.78□□□□□ -0.36
SP140-204ENST00000417495 ECM2O94769 699 aaPredicted RBP12.76□□□□□ -0.37
SP140-204ENST00000417495 FYCO1Q9BQS8 1478 aa12.76□□□□□ -0.37
SP140-204ENST00000417495 CLSPNQ9HAW4 1339 aa12.76□□□□□ -0.37
SP140-204ENST00000417495 GRIN2BQ13224 1484 aa12.75□□□□□ -0.37
SP140-204ENST00000417495 TIAM1Q13009 1591 aa12.75□□□□□ -0.37
SP140-204ENST00000417495 RRBP1Q9P2E9 1410 aaKnown RBP12.73□□□□□ -0.37
SP140-204ENST00000417495 IGSF3O75054 1194 aa12.72□□□□□ -0.37
SP140-204ENST00000417495 NECTIN2Q92692 538 aa12.72□□□□□ -0.37
SP140-204ENST00000417495 CASKIN1Q8WXD9 1431 aa12.72□□□□□ -0.37
SP140-204ENST00000417495 CCDC136Q96JN2 1154 aa12.71□□□□□ -0.38
SP140-204ENST00000417495 UGGT2Q9NYU1 1516 aa12.7□□□□□ -0.38
SP140-204ENST00000417495 FMN1Q68DA7 1419 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms