RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 CC2D2AQ9P2K1 1620 aa14.53□□□□□ -0.08
SS18-203ENST00000415083 RAD54L2Q9Y4B4 1467 aa14.5□□□□□ -0.09
SS18-203ENST00000415083 ITGAEP38570 1179 aa14.49□□□□□ -0.09
SS18-203ENST00000415083 LRRIQ1Q96JM4 1722 aa14.48□□□□□ -0.09
SS18-203ENST00000415083 FANCD2Q9BXW9 1451 aa14.47□□□□□ -0.09
SS18-203ENST00000415083 WDR97A6NE52 1622 aa14.46□□□□□ -0.09
SS18-203ENST00000415083 NESP48681 1621 aa14.46□□□□□ -0.09
SS18-203ENST00000415083 KCNH8Q96L42 1107 aa14.46□□□□□ -0.09
SS18-203ENST00000415083 POLA1P09884 1462 aaPredicted RBP14.44□□□□□ -0.1
SS18-203ENST00000415083 DNMBPQ6XZF7 1577 aa14.44□□□□□ -0.1
SS18-203ENST00000415083 FHOD3Q2V2M9 1422 aa14.44□□□□□ -0.1
SS18-203ENST00000415083 ABCA10Q8WWZ4 1543 aa14.44□□□□□ -0.1
SS18-203ENST00000415083 TOPBP1Q92547 1522 aa14.43□□□□□ -0.1
SS18-203ENST00000415083 P3H3Q8IVL6 736 aa14.43□□□□□ -0.1
SS18-203ENST00000415083 CTTNBP2Q8WZ74 1663 aa14.42□□□□□ -0.1
SS18-203ENST00000415083 SETD5Q9C0A6 1442 aa14.42□□□□□ -0.1
SS18-203ENST00000415083 SIN3AQ96ST3 1273 aa14.4□□□□□ -0.1
SS18-203ENST00000415083 SNAPC4Q5SXM2 1469 aa14.38□□□□□ -0.11
SS18-203ENST00000415083 FYCO1Q9BQS8 1478 aa14.36□□□□□ -0.11
SS18-203ENST00000415083 PTPRKQ15262 1439 aa14.36□□□□□ -0.11
SS18-203ENST00000415083 CUL7Q14999 1698 aa14.36□□□□□ -0.11
SS18-203ENST00000415083 FHAD1B1AJZ9 1412 aa14.36□□□□□ -0.11
SS18-203ENST00000415083 URB2Q14146 1524 aaKnown RBP14.35□□□□□ -0.11
SS18-203ENST00000415083 CASKIN1Q8WXD9 1431 aa14.35□□□□□ -0.11
SS18-203ENST00000415083 SUPT16HQ9Y5B9 1047 aaKnown RBP14.34□□□□□ -0.11
SS18-203ENST00000415083 EFCAB5A4FU69 1503 aa14.34□□□□□ -0.11
SS18-203ENST00000415083 AQRO60306 1485 aaKnown RBP eCLIP14.34□□□□□ -0.113e-6■■■■□ 24.5
SS18-203ENST00000415083 ABCA5Q8WWZ7 1642 aa14.33□□□□□ -0.12
SS18-203ENST00000415083 SAMD9Q5K651 1589 aa14.33□□□□□ -0.12
SS18-203ENST00000415083 FAM50AQ14320 339 aaKnown RBP14.31□□□□□ -0.12
SS18-203ENST00000415083 DNAJC5BQ9UF47 199 aa14.3□□□□□ -0.12
SS18-203ENST00000415083 KDM5BQ9UGL1 1544 aa14.3□□□□□ -0.12
SS18-203ENST00000415083 PPP1R15AO75807 674 aaPredicted RBP14.28□□□□□ -0.12
SS18-203ENST00000415083 MAGI3Q5TCQ9 1506 aa14.28□□□□□ -0.12
SS18-203ENST00000415083 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.28□□□□□ -0.12
SS18-203ENST00000415083 FGD6Q6ZV73 1430 aa14.27□□□□□ -0.12
SS18-203ENST00000415083 GRIN2BQ13224 1484 aa14.26□□□□□ -0.13
SS18-203ENST00000415083 HIRIP3Q9BW71 556 aaPredicted RBP14.26□□□□□ -0.13
SS18-203ENST00000415083 PTPN23Q9H3S7 1636 aa14.25□□□□□ -0.13
SS18-203ENST00000415083 DENND4BO75064 1496 aaPredicted RBP14.24□□□□□ -0.13
SS18-203ENST00000415083 ATP1B4Q9UN42 357 aaPredicted RBP14.24□□□□□ -0.13
SS18-203ENST00000415083 TDRD9Q8NDG6 1382 aaKnown RBP14.24□□□□□ -0.13
SS18-203ENST00000415083 KIF21AQ7Z4S6 1674 aa14.23□□□□□ -0.13
SS18-203ENST00000415083 DDX10Q13206 875 aaKnown RBP14.23□□□□□ -0.13
SS18-203ENST00000415083 ARHGEF11O15085 1522 aa14.22□□□□□ -0.13
SS18-203ENST00000415083 LAMC3Q9Y6N6 1575 aa14.22□□□□□ -0.13
SS18-203ENST00000415083 TARBP1Q13395 1621 aaKnown RBP14.21□□□□□ -0.13
SS18-203ENST00000415083 KDM6BO15054 1643 aa14.21□□□□□ -0.14
SS18-203ENST00000415083 CCDC18Q5T9S5 1454 aa14.21□□□□□ -0.14
SS18-203ENST00000415083 NCOA2Q15596 1464 aa14.2□□□□□ -0.14
SS18-203ENST00000415083 HFM1A2PYH4 1435 aa14.2□□□□□ -0.14
SS18-203ENST00000415083 NAIPQ13075 1403 aa14.2□□□□□ -0.14
SS18-203ENST00000415083 FMN1Q68DA7 1419 aa14.19□□□□□ -0.14
SS18-203ENST00000415083 GAPVD1Q14C86 1478 aa14.18□□□□□ -0.14
SS18-203ENST00000415083 UGGT2Q9NYU1 1516 aa14.17□□□□□ -0.14
SS18-203ENST00000415083 SUPT6HQ7KZ85 1726 aaKnown RBP14.16□□□□□ -0.14
SS18-203ENST00000415083 MYOM3Q5VTT5 1437 aa14.15□□□□□ -0.14
SS18-203ENST00000415083 UACAQ9BZF9 1416 aa14.15□□□□□ -0.14
SS18-203ENST00000415083 THOC2Q8NI27 1593 aaKnown RBP14.15□□□□□ -0.14
SS18-203ENST00000415083 TSHZ2Q9NRE2 1034 aa14.15□□□□□ -0.14
SS18-203ENST00000415083 TIMELESSQ9UNS1 1208 aa14.13□□□□□ -0.15
SS18-203ENST00000415083 PBRM1Q86U86 1689 aa14.13□□□□□ -0.15
SS18-203ENST00000415083 EHBP1L1Q8N3D4 1523 aa14.12□□□□□ -0.15
SS18-203ENST00000415083 GCC2Q8IWJ2 1684 aa14.12□□□□□ -0.15
SS18-203ENST00000415083 MTUS2Q5JR59 1369 aa14.12□□□□□ -0.15
SS18-203ENST00000415083 MYT1Q01538 1121 aa14.11□□□□□ -0.15
SS18-203ENST00000415083 TCOF1Q13428 1488 aaKnown RBP14.1□□□□□ -0.15
SS18-203ENST00000415083 CDK13Q14004 1512 aaKnown RBP14.08□□□□□ -0.16
SS18-203ENST00000415083 HECW1Q76N89 1606 aa14.08□□□□□ -0.16
SS18-203ENST00000415083 ADAMTS12P58397 1594 aa14.06□□□□□ -0.16
SS18-203ENST00000415083 WDR62O43379 1518 aa14.05□□□□□ -0.16
SS18-203ENST00000415083 EPRSP07814 1512 aaKnown RBP14.04□□□□□ -0.16
SS18-203ENST00000415083 TONSLQ96HA7 1378 aa14.03□□□□□ -0.16
SS18-203ENST00000415083 BCANQ96GW7 911 aa14.03□□□□□ -0.16
SS18-203ENST00000415083 IQGAP2Q13576 1575 aa14.03□□□□□ -0.16
SS18-203ENST00000415083 CCER2I3L3R5 266 aa14.03□□□□□ -0.16
SS18-203ENST00000415083 TRIM52Q96A61 297 aa14.03□□□□□ -0.16
SS18-203ENST00000415083 RRP7BPQ9NSQ0 103 aa14.02□□□□□ -0.17
SS18-203ENST00000415083 PDS5BQ9NTI5 1447 aa14.02□□□□□ -0.17
SS18-203ENST00000415083 FKBP8Q14318 412 aa14□□□□□ -0.17
SS18-203ENST00000415083 CHIC2Q9UKJ5 165 aa14□□□□□ -0.17
SS18-203ENST00000415083 WASHC2AQ641Q2 1341 aa14□□□□□ -0.17
SS18-203ENST00000415083 C11orf95C9JLR9 678 aaPredicted RBP13.98□□□□□ -0.17
SS18-203ENST00000415083 AKNAQ7Z591 1439 aa13.97□□□□□ -0.17
SS18-203ENST00000415083 ZNF608Q9ULD9 1512 aaPredicted RBP13.97□□□□□ -0.17
SS18-203ENST00000415083 DISP1Q96F81 1524 aa13.97□□□□□ -0.17
SS18-203ENST00000415083 FOXD1Q16676 465 aa13.96□□□□□ -0.17
SS18-203ENST00000415083 CCDC184Q52MB2 194 aa13.96□□□□□ -0.18
SS18-203ENST00000415083 ARID3CA6NKF2 412 aa13.95□□□□□ -0.18
SS18-203ENST00000415083 ANP32CO43423 234 aa13.95□□□□□ -0.18
SS18-203ENST00000415083 HSPA5P11021 654 aaKnown RBP13.95□□□□□ -0.18
SS18-203ENST00000415083 KIAA0556O60303 1618 aa13.93□□□□□ -0.18
SS18-203ENST00000415083 DNMT1P26358 1616 aaKnown RBP13.93□□□□□ -0.18
SS18-203ENST00000415083 MIA2Q96PC5 1412 aa13.93□□□□□ -0.18
SS18-203ENST00000415083 NUP153P49790 1475 aaKnown RBP13.92□□□□□ -0.18
SS18-203ENST00000415083 TEX14Q8IWB6 1497 aa13.92□□□□□ -0.18
SS18-203ENST00000415083 ZNF644Q9H582 1327 aaPredicted RBP13.92□□□□□ -0.18
SS18-203ENST00000415083 MPHOSPH9Q99550 1183 aa13.92□□□□□ -0.18
SS18-203ENST00000415083 ABCC5O15440 1437 aa13.91□□□□□ -0.18
SS18-203ENST00000415083 NBPF8Q3BBV2 869 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms