RNA–Protein interactions for RNA: ENST00000413141.5

VPS41-204, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-204ENST00000413141 UBTFP17480 764 aaKnown RBP10.72□□□□□ -0.69
VPS41-204ENST00000413141 CTTNBP2Q8WZ74 1663 aa10.72□□□□□ -0.69
VPS41-204ENST00000413141 SYNJ2O15056 1496 aa10.68□□□□□ -0.7
VPS41-204ENST00000413141 GRIN2AQ12879 1464 aa10.67□□□□□ -0.7
VPS41-204ENST00000413141 CLIP1P30622 1438 aa10.67□□□□□ -0.7
VPS41-204ENST00000413141 PLPPR3Q6T4P5 718 aa10.63□□□□□ -0.71
VPS41-204ENST00000413141 ARHGAP35Q9NRY4 1499 aa10.61□□□□□ -0.71
VPS41-204ENST00000413141 CHD1O14646 1710 aa10.61□□□□□ -0.71
VPS41-204ENST00000413141 IQGAP2Q13576 1575 aa10.61□□□□□ -0.71
VPS41-204ENST00000413141 CEP170Q5SW79 1584 aa10.61□□□□□ -0.71
VPS41-204ENST00000413141 EFCAB5A4FU69 1503 aa10.61□□□□□ -0.71
VPS41-204ENST00000413141 ARAP1Q96P48 1450 aa10.61□□□□□ -0.71
VPS41-204ENST00000413141 SAMD9Q5K651 1589 aa10.6□□□□□ -0.71
VPS41-204ENST00000413141 NUP160Q12769 1436 aa10.59□□□□□ -0.71
VPS41-204ENST00000413141 KIAA0586Q9BVV6 1533 aa10.58□□□□□ -0.72
VPS41-204ENST00000413141 VPS8Q8N3P4 1428 aa10.58□□□□□ -0.72
VPS41-204ENST00000413141 CHMP7Q8WUX9 453 aaPredicted RBP10.57□□□□□ -0.72
VPS41-204ENST00000413141 RANGAP1P46060 587 aaPredicted RBP10.56□□□□□ -0.72
VPS41-204ENST00000413141 UGGT2Q9NYU1 1516 aa10.56□□□□□ -0.72
VPS41-204ENST00000413141 FBLN2P98095 1184 aa10.53□□□□□ -0.72
VPS41-204ENST00000413141 FHOD3Q2V2M9 1422 aa10.52□□□□□ -0.73
VPS41-204ENST00000413141 KIAA0556O60303 1618 aa10.52□□□□□ -0.73
VPS41-204ENST00000413141 PCF11O94913 1555 aaKnown RBP10.51□□□□□ -0.73
VPS41-204ENST00000413141 CLASP1Q7Z460 1538 aa10.5□□□□□ -0.73
VPS41-204ENST00000413141 DISP1Q96F81 1524 aa10.5□□□□□ -0.73
VPS41-204ENST00000413141 SHROOM2Q13796 1616 aa10.5□□□□□ -0.73
VPS41-204ENST00000413141 FMN1Q68DA7 1419 aa10.47□□□□□ -0.73
VPS41-204ENST00000413141 FYCO1Q9BQS8 1478 aa10.47□□□□□ -0.73
VPS41-204ENST00000413141 CFAP43Q8NDM7 1665 aa10.45□□□□□ -0.74
VPS41-204ENST00000413141 P3H3Q8IVL6 736 aa10.45□□□□□ -0.74
VPS41-204ENST00000413141 CASKIN1Q8WXD9 1431 aa10.44□□□□□ -0.74
VPS41-204ENST00000413141 CARMIL2Q6F5E8 1435 aa10.43□□□□□ -0.74
VPS41-204ENST00000413141 PIAS4Q8N2W9 510 aaPredicted RBP10.43□□□□□ -0.74
VPS41-204ENST00000413141 HECW1Q76N89 1606 aa10.43□□□□□ -0.74
VPS41-204ENST00000413141 TIAM1Q13009 1591 aa10.43□□□□□ -0.74
VPS41-204ENST00000413141 MAP3K1Q13233 1512 aa10.43□□□□□ -0.74
VPS41-204ENST00000413141 JPH4Q96JJ6 628 aa10.42□□□□□ -0.74
VPS41-204ENST00000413141 PRG4Q92954 1404 aaPredicted RBP10.41□□□□□ -0.74
VPS41-204ENST00000413141 LRRIQ1Q96JM4 1722 aa10.41□□□□□ -0.74
VPS41-204ENST00000413141 RAPGEF6Q8TEU7 1601 aa10.4□□□□□ -0.75
VPS41-204ENST00000413141 ERCC6L2Q5T890 1561 aa10.39□□□□□ -0.75
VPS41-204ENST00000413141 CCDC18Q5T9S5 1454 aa10.37□□□□□ -0.75
VPS41-204ENST00000413141 ABCA8O94911 1581 aa10.37□□□□□ -0.75
VPS41-204ENST00000413141 APLP2Q06481 763 aa10.37□□□□□ -0.75
VPS41-204ENST00000413141 PPARGC1BQ86YN6 1023 aaKnown RBP10.36□□□□□ -0.75
VPS41-204ENST00000413141 NUP153P49790 1475 aaKnown RBP10.36□□□□□ -0.75
VPS41-204ENST00000413141 EPRSP07814 1512 aaKnown RBP10.35□□□□□ -0.75
VPS41-204ENST00000413141 PLB1Q6P1J6 1458 aa10.35□□□□□ -0.75
VPS41-204ENST00000413141 LRRC9Q6ZRR7 1453 aa10.35□□□□□ -0.75
VPS41-204ENST00000413141 CDK13Q14004 1512 aaKnown RBP10.33□□□□□ -0.76
VPS41-204ENST00000413141 OSCARQ8IYS5 282 aa10.33□□□□□ -0.76
VPS41-204ENST00000413141 EHBP1L1Q8N3D4 1523 aa10.33□□□□□ -0.76
VPS41-204ENST00000413141 PTPRGP23470 1445 aa10.32□□□□□ -0.76
VPS41-204ENST00000413141 TTBK1Q5TCY1 1321 aaPredicted RBP10.32□□□□□ -0.76
VPS41-204ENST00000413141 KANK4Q5T7N3 995 aaPredicted RBP10.31□□□□□ -0.76
VPS41-204ENST00000413141 ATP1B4Q9UN42 357 aaPredicted RBP10.31□□□□□ -0.76
VPS41-204ENST00000413141 MAGI3Q5TCQ9 1506 aa10.31□□□□□ -0.76
VPS41-204ENST00000413141 ABCC2Q92887 1545 aa10.3□□□□□ -0.76
VPS41-204ENST00000413141 TRIM26Q12899 539 aaPredicted RBP10.3□□□□□ -0.76
VPS41-204ENST00000413141 UACAQ9BZF9 1416 aa10.29□□□□□ -0.76
VPS41-204ENST00000413141 SUPT6HQ7KZ85 1726 aaKnown RBP10.27□□□□□ -0.76
VPS41-204ENST00000413141 UHRF1BP1LA0JNW5 1464 aa10.27□□□□□ -0.77
VPS41-204ENST00000413141 MTUS2Q5JR59 1369 aa10.26□□□□□ -0.77
VPS41-204ENST00000413141 ARHGEF11O15085 1522 aa10.26□□□□□ -0.77
VPS41-204ENST00000413141 PCGF6Q9BYE7 350 aa10.25□□□□□ -0.77
VPS41-204ENST00000413141 ADCY10Q96PN6 1610 aa10.25□□□□□ -0.77
VPS41-204ENST00000413141 ATP10BO94823 1461 aa10.24□□□□□ -0.77
VPS41-204ENST00000413141 NCOA2Q15596 1464 aa10.24□□□□□ -0.77
VPS41-204ENST00000413141 ARID3CA6NKF2 412 aa10.24□□□□□ -0.77
VPS41-204ENST00000413141 PHLDB1Q86UU1 1377 aa10.24□□□□□ -0.77
VPS41-204ENST00000413141 RRBP1Q9P2E9 1410 aaKnown RBP10.24□□□□□ -0.77
VPS41-204ENST00000413141 ZCCHC11Q5TAX3 1644 aaKnown RBP10.23□□□□□ -0.77
VPS41-204ENST00000413141 TROQ12816 1431 aaPredicted RBP10.23□□□□□ -0.77
VPS41-204ENST00000413141 KDM5BQ9UGL1 1544 aa10.22□□□□□ -0.77
VPS41-204ENST00000413141 KIF14Q15058 1648 aa10.22□□□□□ -0.77
VPS41-204ENST00000413141 RIMBP3CA6NJZ7 1639 aa10.21□□□□□ -0.78
VPS41-204ENST00000413141 RIMBP3BA6NNM3 1639 aa10.21□□□□□ -0.78
VPS41-204ENST00000413141 RIMBP3Q9UFD9 1639 aa10.21□□□□□ -0.78
VPS41-204ENST00000413141 MYOM3Q5VTT5 1437 aa10.19□□□□□ -0.78
VPS41-204ENST00000413141 CCNB3Q8WWL7 1395 aa10.19□□□□□ -0.78
VPS41-204ENST00000413141 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.19□□□□□ -0.78
VPS41-204ENST00000413141 HNRNPUL2Q1KMD3 747 aaKnown RBP10.19□□□□□ -0.78
VPS41-204ENST00000413141 CDK11AQ9UQ88 783 aaPredicted RBP10.19□□□□□ -0.78
VPS41-204ENST00000413141 FGD6Q6ZV73 1430 aa10.18□□□□□ -0.78
VPS41-204ENST00000413141 ITSN2Q9NZM3 1697 aa10.18□□□□□ -0.78
VPS41-204ENST00000413141 ABCC10Q5T3U5 1492 aa10.16□□□□□ -0.78
VPS41-204ENST00000413141 PTPN23Q9H3S7 1636 aa10.15□□□□□ -0.78
VPS41-204ENST00000413141 TCOF1Q13428 1488 aaKnown RBP10.15□□□□□ -0.78
VPS41-204ENST00000413141 TTC37Q6PGP7 1564 aa10.14□□□□□ -0.79
VPS41-204ENST00000413141 PLEKHD1A6NEE1 506 aa10.14□□□□□ -0.79
VPS41-204ENST00000413141 MIA2Q96PC5 1412 aa10.14□□□□□ -0.79
VPS41-204ENST00000413141 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.14□□□□□ -0.79
VPS41-204ENST00000413141 CDC42BPAQ5VT25 1732 aa10.13□□□□□ -0.79
VPS41-204ENST00000413141 WDR7Q9Y4E6 1490 aa10.13□□□□□ -0.79
VPS41-204ENST00000413141 PREX2Q70Z35 1606 aa10.13□□□□□ -0.79
VPS41-204ENST00000413141 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.12□□□□□ -0.79
VPS41-204ENST00000413141 GPATCH8Q9UKJ3 1502 aaKnown RBP10.12□□□□□ -0.79
VPS41-204ENST00000413141 PPP6R1Q9UPN7 881 aa10.11□□□□□ -0.79
VPS41-204ENST00000413141 MYO5CQ9NQX4 1742 aa10.1□□□□□ -0.79
VPS41-204ENST00000413141 ASXL2Q76L83 1435 aa10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 142.3 ms