RNA–Protein interactions for RNA: ENST00000410011.5

LIMS2-208, Transcript of LIM zinc finger domain containing 2, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS2, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS2-208ENST00000410011 CC2D2AQ9P2K1 1620 aa24.25■■□□□ 1.47
LIMS2-208ENST00000410011 CFAP43Q8NDM7 1665 aa24.25■■□□□ 1.47
LIMS2-208ENST00000410011 SETD5Q9C0A6 1442 aa24.23■■□□□ 1.47
LIMS2-208ENST00000410011 MAPKBP1O60336 1514 aa24.22■■□□□ 1.47
LIMS2-208ENST00000410011 EFCAB5A4FU69 1503 aa24.21■■□□□ 1.47
LIMS2-208ENST00000410011 AQRO60306 1485 aaKnown RBP eCLIP24.2■■□□□ 1.47
LIMS2-208ENST00000410011 PHLDB1Q86UU1 1377 aa24.19■■□□□ 1.46
LIMS2-208ENST00000410011 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.19■■□□□ 1.46
LIMS2-208ENST00000410011 FYCO1Q9BQS8 1478 aa24.17■■□□□ 1.46
LIMS2-208ENST00000410011 PCF11O94913 1555 aaKnown RBP24.16■■□□□ 1.46
LIMS2-208ENST00000410011 CUL7Q14999 1698 aa24.16■■□□□ 1.46
LIMS2-208ENST00000410011 TOPBP1Q92547 1522 aa24.15■■□□□ 1.46
LIMS2-208ENST00000410011 POLA1P09884 1462 aaPredicted RBP24.14■■□□□ 1.46
LIMS2-208ENST00000410011 CASKIN1Q8WXD9 1431 aa24.14■■□□□ 1.45
LIMS2-208ENST00000410011 TIMELESSQ9UNS1 1208 aa24.13■■□□□ 1.45
LIMS2-208ENST00000410011 ITGAEP38570 1179 aa24.13■■□□□ 1.45
LIMS2-208ENST00000410011 RAD54L2Q9Y4B4 1467 aa24.09■■□□□ 1.45
LIMS2-208ENST00000410011 CTTNBP2Q8WZ74 1663 aa24.05■■□□□ 1.44
LIMS2-208ENST00000410011 FHOD3Q2V2M9 1422 aa24.04■■□□□ 1.44
LIMS2-208ENST00000410011 FMN1Q68DA7 1419 aa24.04■■□□□ 1.44
LIMS2-208ENST00000410011 FAM50AQ14320 339 aaKnown RBP24■■□□□ 1.43
LIMS2-208ENST00000410011 WDR97A6NE52 1622 aa23.99■■□□□ 1.43
LIMS2-208ENST00000410011 LAMC3Q9Y6N6 1575 aa23.99■■□□□ 1.43
LIMS2-208ENST00000410011 P3H3Q8IVL6 736 aa23.98■■□□□ 1.43
LIMS2-208ENST00000410011 SNAPC4Q5SXM2 1469 aa23.96■■□□□ 1.43
LIMS2-208ENST00000410011 NESP48681 1621 aa23.94■■□□□ 1.42
LIMS2-208ENST00000410011 SAMD9Q5K651 1589 aa23.92■■□□□ 1.42
LIMS2-208ENST00000410011 FGD6Q6ZV73 1430 aa23.92■■□□□ 1.42
LIMS2-208ENST00000410011 MYT1Q01538 1121 aa23.92■■□□□ 1.42
LIMS2-208ENST00000410011 ABCA5Q8WWZ7 1642 aa23.91■■□□□ 1.42
LIMS2-208ENST00000410011 URB2Q14146 1524 aaKnown RBP23.91■■□□□ 1.42
LIMS2-208ENST00000410011 THOC2Q8NI27 1593 aaKnown RBP23.89■■□□□ 1.41
LIMS2-208ENST00000410011 SIN3AQ96ST3 1273 aa23.88■■□□□ 1.41
LIMS2-208ENST00000410011 ATP1B4Q9UN42 357 aaPredicted RBP23.88■■□□□ 1.41
LIMS2-208ENST00000410011 PPP1R15AO75807 674 aaPredicted RBP23.86■■□□□ 1.41
LIMS2-208ENST00000410011 HFM1A2PYH4 1435 aa23.84■■□□□ 1.41
LIMS2-208ENST00000410011 SUPT16HQ9Y5B9 1047 aaKnown RBP23.83■■□□□ 1.41
LIMS2-208ENST00000410011 GRIN2BQ13224 1484 aa23.83■■□□□ 1.41
LIMS2-208ENST00000410011 GAPVD1Q14C86 1478 aa23.83■■□□□ 1.41
LIMS2-208ENST00000410011 MTUS2Q5JR59 1369 aa23.82■■□□□ 1.4
LIMS2-208ENST00000410011 PDS5BQ9NTI5 1447 aa23.81■■□□□ 1.4
LIMS2-208ENST00000410011 UACAQ9BZF9 1416 aa23.8■■□□□ 1.4
LIMS2-208ENST00000410011 MYOM3Q5VTT5 1437 aa23.78■■□□□ 1.4
LIMS2-208ENST00000410011 CCDC18Q5T9S5 1454 aa23.77■■□□□ 1.4
LIMS2-208ENST00000410011 KIF21AQ7Z4S6 1674 aa23.76■■□□□ 1.39
LIMS2-208ENST00000410011 TDRD9Q8NDG6 1382 aaKnown RBP23.76■■□□□ 1.39
LIMS2-208ENST00000410011 NCOA2Q15596 1464 aa23.76■■□□□ 1.39
LIMS2-208ENST00000410011 EHBP1L1Q8N3D4 1523 aa23.75■■□□□ 1.39
LIMS2-208ENST00000410011 LRRIQ1Q96JM4 1722 aa23.75■■□□□ 1.39
LIMS2-208ENST00000410011 PTPN23Q9H3S7 1636 aa23.75■■□□□ 1.39
LIMS2-208ENST00000410011 PTPRKQ15262 1439 aa23.74■■□□□ 1.39
LIMS2-208ENST00000410011 SUPT6HQ7KZ85 1726 aaKnown RBP23.74■■□□□ 1.39
LIMS2-208ENST00000410011 ARHGEF11O15085 1522 aa23.74■■□□□ 1.39
LIMS2-208ENST00000410011 DDX10Q13206 875 aaKnown RBP23.72■■□□□ 1.39
LIMS2-208ENST00000410011 NAIPQ13075 1403 aa23.72■■□□□ 1.39
LIMS2-208ENST00000410011 CCER2I3L3R5 266 aa23.71■■□□□ 1.39
LIMS2-208ENST00000410011 UGGT2Q9NYU1 1516 aa23.69■■□□□ 1.38
LIMS2-208ENST00000410011 TONSLQ96HA7 1378 aa23.68■■□□□ 1.38
LIMS2-208ENST00000410011 KCNH8Q96L42 1107 aa23.67■■□□□ 1.38
LIMS2-208ENST00000410011 TARBP1Q13395 1621 aaKnown RBP23.67■■□□□ 1.38
LIMS2-208ENST00000410011 TCOF1Q13428 1488 aaKnown RBP23.65■■□□□ 1.38
LIMS2-208ENST00000410011 AKNAQ7Z591 1439 aa23.63■■□□□ 1.37
LIMS2-208ENST00000410011 ANP32CO43423 234 aa23.59■■□□□ 1.37
LIMS2-208ENST00000410011 HECW1Q76N89 1606 aa23.58■■□□□ 1.37
LIMS2-208ENST00000410011 MAGI3Q5TCQ9 1506 aa23.58■■□□□ 1.36
LIMS2-208ENST00000410011 MIA2Q96PC5 1412 aa23.56■■□□□ 1.36
LIMS2-208ENST00000410011 KDM5BQ9UGL1 1544 aa23.56■■□□□ 1.36
LIMS2-208ENST00000410011 GCC2Q8IWJ2 1684 aa23.55■■□□□ 1.36
LIMS2-208ENST00000410011 IQGAP2Q13576 1575 aa23.54■■□□□ 1.36
LIMS2-208ENST00000410011 PBRM1Q86U86 1689 aa23.53■■□□□ 1.36
LIMS2-208ENST00000410011 EPRSP07814 1512 aaKnown RBP23.52■■□□□ 1.36
LIMS2-208ENST00000410011 ADAMTS12P58397 1594 aa23.5■■□□□ 1.35
LIMS2-208ENST00000410011 HIRIP3Q9BW71 556 aaPredicted RBP23.47■■□□□ 1.35
LIMS2-208ENST00000410011 WDR62O43379 1518 aa23.45■■□□□ 1.34
LIMS2-208ENST00000410011 DENND4BO75064 1496 aaPredicted RBP23.45■■□□□ 1.34
LIMS2-208ENST00000410011 TSHZ2Q9NRE2 1034 aa23.44■■□□□ 1.34
LIMS2-208ENST00000410011 MRC2Q9UBG0 1479 aa23.4■■□□□ 1.34
LIMS2-208ENST00000410011 ROCK1Q13464 1354 aa23.4■■□□□ 1.34
LIMS2-208ENST00000410011 RRP7BPQ9NSQ0 103 aa23.39■■□□□ 1.34
LIMS2-208ENST00000410011 DNAJC5BQ9UF47 199 aa23.38■■□□□ 1.33
LIMS2-208ENST00000410011 FKBP8Q14318 412 aa23.36■■□□□ 1.33
LIMS2-208ENST00000410011 CDK13Q14004 1512 aaKnown RBP23.36■■□□□ 1.33
LIMS2-208ENST00000410011 MPHOSPH9Q99550 1183 aa23.35■■□□□ 1.33
LIMS2-208ENST00000410011 KIAA0586Q9BVV6 1533 aa23.34■■□□□ 1.33
LIMS2-208ENST00000410011 KDM6BO15054 1643 aa23.33■■□□□ 1.33
LIMS2-208ENST00000410011 IFT140Q96RY7 1462 aa23.33■■□□□ 1.33
LIMS2-208ENST00000410011 NEFLP07196 543 aa23.33■■□□□ 1.33
LIMS2-208ENST00000410011 CHIC2Q9UKJ5 165 aa23.33■■□□□ 1.33
LIMS2-208ENST00000410011 TRIM52Q96A61 297 aa23.31■■□□□ 1.32
LIMS2-208ENST00000410011 EIF4G2P78344 907 aaKnown RBP eCLIP23.3■■□□□ 1.32
LIMS2-208ENST00000410011 HSPA5P11021 654 aaKnown RBP23.3■■□□□ 1.32
LIMS2-208ENST00000410011 WASHC2AQ641Q2 1341 aa23.29■■□□□ 1.32
LIMS2-208ENST00000410011 DAPK1P53355 1430 aa23.29■■□□□ 1.32
LIMS2-208ENST00000410011 KIAA0556O60303 1618 aa23.28■■□□□ 1.32
LIMS2-208ENST00000410011 DNMT1P26358 1616 aaKnown RBP23.28■■□□□ 1.32
LIMS2-208ENST00000410011 DISP1Q96F81 1524 aa23.28■■□□□ 1.32
LIMS2-208ENST00000410011 ANKRD30BQ9BXX2 1392 aa23.26■■□□□ 1.31
LIMS2-208ENST00000410011 ABCC5O15440 1437 aa23.25■■□□□ 1.31
LIMS2-208ENST00000410011 RPRD2Q5VT52 1461 aaKnown RBP23.25■■□□□ 1.31
LIMS2-208ENST00000410011 L3MBTL2Q969R5 705 aa23.24■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms