RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 SETD5Q9C0A6 1442 aa25.63■■□□□ 1.69
USP48-204ENST00000400301 RAB3GAP2Q9H2M9 1393 aa25.62■■□□□ 1.69
USP48-204ENST00000400301 DHX57Q6P158 1386 aaKnown RBP25.58■■□□□ 1.69
USP48-204ENST00000400301 KIF21BO75037 1637 aa25.56■■□□□ 1.68
USP48-204ENST00000400301 CHMP7Q8WUX9 453 aaPredicted RBP25.56■■□□□ 1.68
USP48-204ENST00000400301 NCAPD3P42695 1498 aa25.55■■□□□ 1.68
USP48-204ENST00000400301 FAM9BQ8IZU0 186 aa25.53■■□□□ 1.68
USP48-204ENST00000400301 TDRD9Q8NDG6 1382 aaKnown RBP25.53■■□□□ 1.68
USP48-204ENST00000400301 EIF4G2P78344 907 aaKnown RBP eCLIP25.53■■□□□ 1.68
USP48-204ENST00000400301 SLC4A1APQ9BWU0 796 aaKnown RBP25.51■■□□□ 1.67
USP48-204ENST00000400301 ARHGAP35Q9NRY4 1499 aa25.51■■□□□ 1.67
USP48-204ENST00000400301 IGF1RP08069 1367 aa25.49■■□□□ 1.67
USP48-204ENST00000400301 FHOD3Q2V2M9 1422 aa25.48■■□□□ 1.67
USP48-204ENST00000400301 TIMELESSQ9UNS1 1208 aa25.48■■□□□ 1.67
USP48-204ENST00000400301 BICRAQ9NZM4 1560 aa25.48■■□□□ 1.67
USP48-204ENST00000400301 EIF4G1Q04637 1599 aaKnown RBP25.43■■□□□ 1.66
USP48-204ENST00000400301 MRS2Q9HD23 443 aa25.41■■□□□ 1.66
USP48-204ENST00000400301 TSPY4P0CV99 314 aa25.41■■□□□ 1.66
USP48-204ENST00000400301 TSPY10P0CW01 314 aa25.41■■□□□ 1.66
USP48-204ENST00000400301 FMN1Q68DA7 1419 aa25.4■■□□□ 1.66
USP48-204ENST00000400301 FANCD2Q9BXW9 1451 aa25.38■■□□□ 1.65
USP48-204ENST00000400301 FGD5Q6ZNL6 1462 aa25.37■■□□□ 1.65
USP48-204ENST00000400301 CFDP1Q9UEE9 299 aaPredicted RBP25.36■■□□□ 1.65
USP48-204ENST00000400301 SUPT16HQ9Y5B9 1047 aaKnown RBP25.36■■□□□ 1.65
USP48-204ENST00000400301 ARAP1Q96P48 1450 aa25.36■■□□□ 1.65
USP48-204ENST00000400301 PRXQ9BXM0 1461 aa25.35■■□□□ 1.65
USP48-204ENST00000400301 PDS5BQ9NTI5 1447 aa25.34■■□□□ 1.65
USP48-204ENST00000400301 TOP2BQ02880 1626 aa25.34■■□□□ 1.65
USP48-204ENST00000400301 KDM2AQ9Y2K7 1162 aa25.34■■□□□ 1.65
USP48-204ENST00000400301 ERICH3Q5RHP9 1530 aa25.33■■□□□ 1.65
USP48-204ENST00000400301 CFTRP13569 1480 aa25.33■■□□□ 1.65
USP48-204ENST00000400301 IRX6P78412 446 aaPredicted RBP25.32■■□□□ 1.64
USP48-204ENST00000400301 PLEKHD1A6NEE1 506 aa25.31■■□□□ 1.64
USP48-204ENST00000400301 PPP1R15AO75807 674 aaPredicted RBP25.31■■□□□ 1.64
USP48-204ENST00000400301 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.28■■□□□ 1.644e-7■■□□□ 12.9
USP48-204ENST00000400301 CUX1P39880 1505 aa25.25■■□□□ 1.63
USP48-204ENST00000400301 DAXXQ9UER7 740 aaPredicted RBP25.25■■□□□ 1.63
USP48-204ENST00000400301 TMC1Q8TDI8 760 aa25.24■■□□□ 1.63
USP48-204ENST00000400301 UNC13AQ9UPW8 1703 aa25.23■■□□□ 1.63
USP48-204ENST00000400301 RAD54L2Q9Y4B4 1467 aa25.23■■□□□ 1.63
USP48-204ENST00000400301 PEG3Q9GZU2 1588 aa25.22■■□□□ 1.63
USP48-204ENST00000400301 HMGXB3Q12766 1538 aa25.19■■□□□ 1.62
USP48-204ENST00000400301 PHLDB1Q86UU1 1377 aa25.18■■□□□ 1.62
USP48-204ENST00000400301 CCER2I3L3R5 266 aa25.18■■□□□ 1.62
USP48-204ENST00000400301 FOXD1Q16676 465 aa25.18■■□□□ 1.62
USP48-204ENST00000400301 SALL2Q9Y467 1007 aaPredicted RBP25.16■■□□□ 1.62
USP48-204ENST00000400301 RRBP1Q9P2E9 1410 aaKnown RBP25.16■■□□□ 1.62
USP48-204ENST00000400301 HSPA5P11021 654 aaKnown RBP25.14■■□□□ 1.62
USP48-204ENST00000400301 KCNH8Q96L42 1107 aa25.14■■□□□ 1.62
USP48-204ENST00000400301 LRRC9Q6ZRR7 1453 aa25.12■■□□□ 1.61
USP48-204ENST00000400301 MPHOSPH9Q99550 1183 aa25.11■■□□□ 1.61
USP48-204ENST00000400301 ERCC6Q03468 1493 aa25.09■■□□□ 1.61
USP48-204ENST00000400301 RTL5Q5HYW3 569 aaPredicted RBP25.08■■□□□ 1.61
USP48-204ENST00000400301 RGL3Q3MIN7 710 aa25.07■■□□□ 1.6
USP48-204ENST00000400301 SENP3-EIF4A1A0A087X0R7 540 aa25.05■■□□□ 1.6
USP48-204ENST00000400301 CARD11Q9BXL7 1154 aa25.04■■□□□ 1.6
USP48-204ENST00000400301 CCDC136Q96JN2 1154 aa25.02■■□□□ 1.6
USP48-204ENST00000400301 GAPVD1Q14C86 1478 aa25.01■■□□□ 1.59
USP48-204ENST00000400301 L3MBTL2Q969R5 705 aa25■■□□□ 1.59
USP48-204ENST00000400301 CCDC18Q5T9S5 1454 aa24.98■■□□□ 1.59
USP48-204ENST00000400301 FGD6Q6ZV73 1430 aa24.98■■□□□ 1.59
USP48-204ENST00000400301 ANP32AP39687 249 aaKnown RBP24.96■■□□□ 1.59
USP48-204ENST00000400301 CASKIN1Q8WXD9 1431 aa24.95■■□□□ 1.58
USP48-204ENST00000400301 PKD2Q13563 968 aa24.95■■□□□ 1.58
USP48-204ENST00000400301 CHGAP10645 457 aaKnown RBP24.94■■□□□ 1.58
USP48-204ENST00000400301 NESP48681 1621 aa24.93■■□□□ 1.58
USP48-204ENST00000400301 NPM2Q86SE8 214 aaKnown RBP24.89■■□□□ 1.57
USP48-204ENST00000400301 DCAF11Q8TEB1 546 aa24.88■■□□□ 1.57
USP48-204ENST00000400301 TIAM1Q13009 1591 aa24.87■■□□□ 1.57
USP48-204ENST00000400301 POLA1P09884 1462 aaPredicted RBP24.87■■□□□ 1.57
USP48-204ENST00000400301 MYOM3Q5VTT5 1437 aa24.87■■□□□ 1.57
USP48-204ENST00000400301 CARMIL2Q6F5E8 1435 aa24.86■■□□□ 1.57
USP48-204ENST00000400301 TOPBP1Q92547 1522 aa24.85■■□□□ 1.57
USP48-204ENST00000400301 FYCO1Q9BQS8 1478 aa24.85■■□□□ 1.57
USP48-204ENST00000400301 CANXP27824 592 aaKnown RBP24.84■■□□□ 1.57
USP48-204ENST00000400301 CC2D2AQ9P2K1 1620 aa24.84■■□□□ 1.57
USP48-204ENST00000400301 BIVM-ERCC5R4GMW8 1640 aa24.83■■□□□ 1.57
USP48-204ENST00000400301 PPP4R2Q9NY27 417 aa24.82■■□□□ 1.56
USP48-204ENST00000400301 UACAQ9BZF9 1416 aa24.81■■□□□ 1.56
USP48-204ENST00000400301 NCOA2Q15596 1464 aa24.79■■□□□ 1.56
USP48-204ENST00000400301 WDR43Q15061 677 aaKnown RBP eCLIP24.79■■□□□ 1.56
USP48-204ENST00000400301 NUP155O75694 1391 aa24.79■■□□□ 1.56
USP48-204ENST00000400301 NPM1P06748 294 aaKnown RBP eCLIP24.79■■□□□ 1.56
USP48-204ENST00000400301 TSHZ2Q9NRE2 1034 aa24.79■■□□□ 1.56
USP48-204ENST00000400301 JPH4Q96JJ6 628 aa24.78■■□□□ 1.56
USP48-204ENST00000400301 ANKRD30AQ9BXX3 1397 aa24.78■■□□□ 1.56
USP48-204ENST00000400301 AQRO60306 1485 aaKnown RBP eCLIP24.77■■□□□ 1.567e-7■■■□□ 15
USP48-204ENST00000400301 B4GALNT3Q6L9W6 998 aa24.76■■□□□ 1.55
USP48-204ENST00000400301 EFCAB5A4FU69 1503 aa24.75■■□□□ 1.55
USP48-204ENST00000400301 ANP32EQ9BTT0 268 aa24.74■■□□□ 1.55
USP48-204ENST00000400301 ZNF644Q9H582 1327 aaPredicted RBP24.72■■□□□ 1.55
USP48-204ENST00000400301 DNMBPQ6XZF7 1577 aa24.71■■□□□ 1.55
USP48-204ENST00000400301 RBM19Q9Y4C8 960 aaKnown RBP24.69■■□□□ 1.54
USP48-204ENST00000400301 HNRNPMP52272 730 aaKnown RBP eCLIP24.69■■□□□ 1.549e-7■■■□□ 18.2
USP48-204ENST00000400301 ABCA10Q8WWZ4 1543 aa24.68■■□□□ 1.54
USP48-204ENST00000400301 CC2D1BQ5T0F9 858 aaKnown RBP24.65■■□□□ 1.54
USP48-204ENST00000400301 KNSTRNQ9Y448 316 aa24.65■■□□□ 1.54
USP48-204ENST00000400301 PRKRIP1Q9H875 184 aaPredicted RBP24.63■■□□□ 1.53
USP48-204ENST00000400301 PCF11O94913 1555 aaKnown RBP24.63■■□□□ 1.53
USP48-204ENST00000400301 ZBTB47Q9UFB7 747 aaPredicted RBP24.62■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms