RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 GRIN2BQ13224 1484 aa23.05■■□□□ 1.28
SKA1-202ENST00000398452 ERICH3Q5RHP9 1530 aa23.03■■□□□ 1.28
SKA1-202ENST00000398452 EHMT2Q96KQ7 1210 aa23.02■■□□□ 1.28
SKA1-202ENST00000398452 CARMIL1Q5VZK9 1371 aa23■■□□□ 1.27
SKA1-202ENST00000398452 DMRT2Q9Y5R5 561 aa22.98■■□□□ 1.27
SKA1-202ENST00000398452 MAGI1Q96QZ7 1491 aaPredicted RBP22.97■■□□□ 1.27
SKA1-202ENST00000398452 CUL7Q14999 1698 aa22.97■■□□□ 1.27
SKA1-202ENST00000398452 GOLGA3Q08378 1498 aa22.96■■□□□ 1.27
SKA1-202ENST00000398452 PBRM1Q86U86 1689 aa22.96■■□□□ 1.27
SKA1-202ENST00000398452 LOC105371045A0A1W2PR82 267 aa22.95■■□□□ 1.26
SKA1-202ENST00000398452 KIF21BO75037 1637 aa22.95■■□□□ 1.26
SKA1-202ENST00000398452 UBTFP17480 764 aaKnown RBP22.95■■□□□ 1.26
SKA1-202ENST00000398452 ARAP1Q96P48 1450 aa22.94■■□□□ 1.26
SKA1-202ENST00000398452 PRXQ9BXM0 1461 aa22.94■■□□□ 1.26
SKA1-202ENST00000398452 RAPGEF2Q9Y4G8 1499 aa22.92■■□□□ 1.26
SKA1-202ENST00000398452 SYNJ2O15056 1496 aa22.92■■□□□ 1.26
SKA1-202ENST00000398452 FHAD1B1AJZ9 1412 aa22.91■■□□□ 1.26
SKA1-202ENST00000398452 TRHP20396 242 aaPredicted RBP22.88■■□□□ 1.25
SKA1-202ENST00000398452 CLASP1Q7Z460 1538 aa22.87■■□□□ 1.25
SKA1-202ENST00000398452 ADAMTS12P58397 1594 aa22.83■■□□□ 1.25
SKA1-202ENST00000398452 TNIKQ9UKE5 1360 aa22.78■■□□□ 1.24
SKA1-202ENST00000398452 GRIN2AQ12879 1464 aa22.73■■□□□ 1.23
SKA1-202ENST00000398452 RANGAP1P46060 587 aaPredicted RBP22.65■■□□□ 1.22
SKA1-202ENST00000398452 CEP170Q5SW79 1584 aa22.64■■□□□ 1.22
SKA1-202ENST00000398452 ERCC6L2Q5T890 1561 aa22.63■■□□□ 1.21
SKA1-202ENST00000398452 NUP160Q12769 1436 aa22.61■■□□□ 1.21
SKA1-202ENST00000398452 CEP162Q5TB80 1403 aa22.6■■□□□ 1.21
SKA1-202ENST00000398452 PPP4R3CPQ6ZMV5 832 aa22.6■■□□□ 1.21
SKA1-202ENST00000398452 CTTNBP2Q8WZ74 1663 aa22.59■■□□□ 1.21
SKA1-202ENST00000398452 CLIP1P30622 1438 aa22.57■■□□□ 1.2
SKA1-202ENST00000398452 KIAA0586Q9BVV6 1533 aa22.56■■□□□ 1.2
SKA1-202ENST00000398452 IQGAP2Q13576 1575 aa22.52■■□□□ 1.2
SKA1-202ENST00000398452 JPH4Q96JJ6 628 aa22.5■■□□□ 1.19
SKA1-202ENST00000398452 PRG4Q92954 1404 aaPredicted RBP22.48■■□□□ 1.19
SKA1-202ENST00000398452 SHROOM2Q13796 1616 aa22.46■■□□□ 1.19
SKA1-202ENST00000398452 EFCAB5A4FU69 1503 aa22.44■■□□□ 1.18
SKA1-202ENST00000398452 P3H3Q8IVL6 736 aa22.4■■□□□ 1.18
SKA1-202ENST00000398452 UGGT2Q9NYU1 1516 aa22.4■■□□□ 1.18
SKA1-202ENST00000398452 CARMIL2Q6F5E8 1435 aa22.4■■□□□ 1.18
SKA1-202ENST00000398452 ARHGAP35Q9NRY4 1499 aa22.39■■□□□ 1.17
SKA1-202ENST00000398452 TTBK1Q5TCY1 1321 aaPredicted RBP22.35■■□□□ 1.17
SKA1-202ENST00000398452 SAMD9Q5K651 1589 aa22.32■■□□□ 1.16
SKA1-202ENST00000398452 FHOD3Q2V2M9 1422 aa22.31■■□□□ 1.16
SKA1-202ENST00000398452 FMN1Q68DA7 1419 aa22.29■■□□□ 1.16
SKA1-202ENST00000398452 VPS8Q8N3P4 1428 aa22.29■■□□□ 1.16
SKA1-202ENST00000398452 NPM1P06748 294 aaKnown RBP eCLIP22.28■■□□□ 1.16
SKA1-202ENST00000398452 APLP2Q06481 763 aa22.28■■□□□ 1.16
SKA1-202ENST00000398452 KIAA0556O60303 1618 aa22.28■■□□□ 1.16
SKA1-202ENST00000398452 DISP1Q96F81 1524 aa22.26■■□□□ 1.15
SKA1-202ENST00000398452 ATP1B4Q9UN42 357 aaPredicted RBP22.23■■□□□ 1.15
SKA1-202ENST00000398452 CNKSR2Q8WXI2 1034 aa22.22■■□□□ 1.15
SKA1-202ENST00000398452 FAM69CQ0P6D2 419 aa22.19■■□□□ 1.14
SKA1-202ENST00000398452 HOXD11P31277 338 aaPredicted RBP22.17■■□□□ 1.14
SKA1-202ENST00000398452 PTPRGP23470 1445 aa22.16■■□□□ 1.14
SKA1-202ENST00000398452 ADCY10Q96PN6 1610 aa22.15■■□□□ 1.14
SKA1-202ENST00000398452 KIF13AQ9H1H9 1805 aa22.15■■□□□ 1.14
SKA1-202ENST00000398452 CASKIN1Q8WXD9 1431 aa22.12■■□□□ 1.13
SKA1-202ENST00000398452 FYCO1Q9BQS8 1478 aa22.11■■□□□ 1.13
SKA1-202ENST00000398452 PCF11O94913 1555 aaKnown RBP22.08■■□□□ 1.12
SKA1-202ENST00000398452 ABCC10Q5T3U5 1492 aa22.07■■□□□ 1.12
SKA1-202ENST00000398452 HECW1Q76N89 1606 aa22.06■■□□□ 1.12
SKA1-202ENST00000398452 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.04■■□□□ 1.12
SKA1-202ENST00000398452 HNRNPUL2Q1KMD3 747 aaKnown RBP22.04■■□□□ 1.12
SKA1-202ENST00000398452 MAPKBP1O60336 1514 aa22.04■■□□□ 1.12
SKA1-202ENST00000398452 RAPGEF6Q8TEU7 1601 aa22.02■■□□□ 1.12
SKA1-202ENST00000398452 UACAQ9BZF9 1416 aa22.01■■□□□ 1.11
SKA1-202ENST00000398452 RNF216Q9NWF9 866 aaPredicted RBP22.01■■□□□ 1.11
SKA1-202ENST00000398452 CCDC18Q5T9S5 1454 aa22.01■■□□□ 1.11
SKA1-202ENST00000398452 PLB1Q6P1J6 1458 aa22.01■■□□□ 1.11
SKA1-202ENST00000398452 DIP2BQ9P265 1576 aa22■■□□□ 1.11
SKA1-202ENST00000398452 TSPOAP1O95153 1857 aa21.99■■□□□ 1.11
SKA1-202ENST00000398452 CDK11AQ9UQ88 783 aaPredicted RBP21.98■■□□□ 1.11
SKA1-202ENST00000398452 DCAF8L1A6NGE4 600 aa21.97■■□□□ 1.11
SKA1-202ENST00000398452 MAP3K1Q13233 1512 aa21.96■■□□□ 1.11
SKA1-202ENST00000398452 ABCA8O94911 1581 aa21.96■■□□□ 1.11
SKA1-202ENST00000398452 ARID3CA6NKF2 412 aa21.96■■□□□ 1.11
SKA1-202ENST00000398452 PPARGC1BQ86YN6 1023 aaKnown RBP21.94■■□□□ 1.1
SKA1-202ENST00000398452 EPRSP07814 1512 aaKnown RBP21.94■■□□□ 1.1
SKA1-202ENST00000398452 ABCC2Q92887 1545 aa21.94■■□□□ 1.1
SKA1-202ENST00000398452 TIAM1Q13009 1591 aa21.93■■□□□ 1.1
SKA1-202ENST00000398452 NUP153P49790 1475 aaKnown RBP21.92■■□□□ 1.1
SKA1-202ENST00000398452 ASXL2Q76L83 1435 aa21.91■■□□□ 1.1
SKA1-202ENST00000398452 MTUS2Q5JR59 1369 aa21.91■■□□□ 1.1
SKA1-202ENST00000398452 UHRF1BP1LA0JNW5 1464 aa21.9■■□□□ 1.1
SKA1-202ENST00000398452 CFAP43Q8NDM7 1665 aa21.88■■□□□ 1.09
SKA1-202ENST00000398452 PLEKHD1A6NEE1 506 aa21.86■■□□□ 1.09
SKA1-202ENST00000398452 CDK13Q14004 1512 aaKnown RBP21.85■■□□□ 1.09
SKA1-202ENST00000398452 LRRC9Q6ZRR7 1453 aa21.85■■□□□ 1.09
SKA1-202ENST00000398452 KANK4Q5T7N3 995 aaPredicted RBP21.84■■□□□ 1.09
SKA1-202ENST00000398452 KDM6BO15054 1643 aa21.84■■□□□ 1.09
SKA1-202ENST00000398452 ATP10BO94823 1461 aa21.82■■□□□ 1.08
SKA1-202ENST00000398452 NCBP3Q53F19 620 aaKnown RBP21.81■■□□□ 1.08
SKA1-202ENST00000398452 EHBP1L1Q8N3D4 1523 aa21.8■■□□□ 1.08
SKA1-202ENST00000398452 KDM5BQ9UGL1 1544 aa21.79■■□□□ 1.08
SKA1-202ENST00000398452 LRRIQ1Q96JM4 1722 aa21.78■■□□□ 1.08
SKA1-202ENST00000398452 ZCCHC11Q5TAX3 1644 aaKnown RBP21.78■■□□□ 1.08
SKA1-202ENST00000398452 KCNH8Q96L42 1107 aa21.76■■□□□ 1.07
SKA1-202ENST00000398452 TROQ12816 1431 aaPredicted RBP21.75■■□□□ 1.07
SKA1-202ENST00000398452 GLI2P10070 1586 aa21.74■■□□□ 1.07
SKA1-202ENST00000398452 TRIM26Q12899 539 aaPredicted RBP21.71■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms