RNA–Protein interactions for RNA: ENST00000397901.7

CHMP1A-201, Transcript of charged multivesicular body protein 1A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP1A, Length 2,483 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-201ENST00000397901 CARMIL1Q5VZK9 1371 aa23.17■■□□□ 1.3
CHMP1A-201ENST00000397901 ABCA10Q8WWZ4 1543 aa23.16■■□□□ 1.3
CHMP1A-201ENST00000397901 ARHGAP35Q9NRY4 1499 aa23.14■■□□□ 1.3
CHMP1A-201ENST00000397901 RAD54L2Q9Y4B4 1467 aa23.14■■□□□ 1.3
CHMP1A-201ENST00000397901 DNAJC5BQ9UF47 199 aa23.13■■□□□ 1.29
CHMP1A-201ENST00000397901 RRBP1Q9P2E9 1410 aaKnown RBP23.11■■□□□ 1.29
CHMP1A-201ENST00000397901 URB2Q14146 1524 aaKnown RBP23.1■■□□□ 1.29
CHMP1A-201ENST00000397901 ITGAEP38570 1179 aa23.09■■□□□ 1.29
CHMP1A-201ENST00000397901 PDS5BQ9NTI5 1447 aa23.06■■□□□ 1.28
CHMP1A-201ENST00000397901 CCNB3Q8WWL7 1395 aa23.05■■□□□ 1.28
CHMP1A-201ENST00000397901 WDR97A6NE52 1622 aa23.04■■□□□ 1.28
CHMP1A-201ENST00000397901 KIF21AQ7Z4S6 1674 aa23.01■■□□□ 1.27
CHMP1A-201ENST00000397901 CUL7Q14999 1698 aa22.99■■□□□ 1.27
CHMP1A-201ENST00000397901 ABCA5Q8WWZ7 1642 aa22.93■■□□□ 1.26
CHMP1A-201ENST00000397901 RAB3GAP2Q9H2M9 1393 aa22.91■■□□□ 1.26
CHMP1A-201ENST00000397901 MAP3K1Q13233 1512 aa22.87■■□□□ 1.25
CHMP1A-201ENST00000397901 CTTNBP2Q8WZ74 1663 aa22.86■■□□□ 1.25
CHMP1A-201ENST00000397901 TDRD9Q8NDG6 1382 aaKnown RBP22.85■■□□□ 1.25
CHMP1A-201ENST00000397901 GAPVD1Q14C86 1478 aa22.84■■□□□ 1.25
CHMP1A-201ENST00000397901 TARBP1Q13395 1621 aaKnown RBP22.84■■□□□ 1.25
CHMP1A-201ENST00000397901 TIAM1Q13009 1591 aa22.84■■□□□ 1.25
CHMP1A-201ENST00000397901 MAPKBP1O60336 1514 aa22.84■■□□□ 1.25
CHMP1A-201ENST00000397901 KCNH8Q96L42 1107 aa22.82■■□□□ 1.24
CHMP1A-201ENST00000397901 EFCAB5A4FU69 1503 aa22.81■■□□□ 1.24
CHMP1A-201ENST00000397901 FHAD1B1AJZ9 1412 aa22.81■■□□□ 1.24
CHMP1A-201ENST00000397901 PCF11O94913 1555 aaKnown RBP22.77■■□□□ 1.24
CHMP1A-201ENST00000397901 FAM50AQ14320 339 aaKnown RBP22.77■■□□□ 1.24
CHMP1A-201ENST00000397901 SETD5Q9C0A6 1442 aa22.77■■□□□ 1.24
CHMP1A-201ENST00000397901 PHLDB1Q86UU1 1377 aa22.76■■□□□ 1.23
CHMP1A-201ENST00000397901 PRKCSHP14314 528 aaPredicted RBP22.76■■□□□ 1.23
CHMP1A-201ENST00000397901 LRRC9Q6ZRR7 1453 aa22.75■■□□□ 1.23
CHMP1A-201ENST00000397901 FHOD3Q2V2M9 1422 aa22.75■■□□□ 1.23
CHMP1A-201ENST00000397901 CFAP43Q8NDM7 1665 aa22.74■■□□□ 1.23
CHMP1A-201ENST00000397901 MRC2Q9UBG0 1479 aa22.74■■□□□ 1.23
CHMP1A-201ENST00000397901 SIN3AQ96ST3 1273 aa22.74■■□□□ 1.23
CHMP1A-201ENST00000397901 P3H3Q8IVL6 736 aa22.73■■□□□ 1.23
CHMP1A-201ENST00000397901 ATP1B4Q9UN42 357 aaPredicted RBP22.72■■□□□ 1.23
CHMP1A-201ENST00000397901 AQRO60306 1485 aaKnown RBP eCLIP22.7■■□□□ 1.227e-7■■■■■ 29
CHMP1A-201ENST00000397901 FYCO1Q9BQS8 1478 aa22.69■■□□□ 1.22
CHMP1A-201ENST00000397901 DDX10Q13206 875 aaKnown RBP22.68■■□□□ 1.22
CHMP1A-201ENST00000397901 PBRM1Q86U86 1689 aa22.68■■□□□ 1.22
CHMP1A-201ENST00000397901 SAMD9Q5K651 1589 aa22.67■■□□□ 1.22
CHMP1A-201ENST00000397901 CASKIN1Q8WXD9 1431 aa22.67■■□□□ 1.22
CHMP1A-201ENST00000397901 FMN1Q68DA7 1419 aa22.62■■□□□ 1.21
CHMP1A-201ENST00000397901 WDR62O43379 1518 aa22.61■■□□□ 1.21
CHMP1A-201ENST00000397901 RBM19Q9Y4C8 960 aaKnown RBP22.6■■□□□ 1.21
CHMP1A-201ENST00000397901 SNAPC4Q5SXM2 1469 aa22.6■■□□□ 1.21
CHMP1A-201ENST00000397901 HIRIP3Q9BW71 556 aaPredicted RBP22.6■■□□□ 1.21
CHMP1A-201ENST00000397901 ADAMTS12P58397 1594 aa22.58■■□□□ 1.21
CHMP1A-201ENST00000397901 BCANQ96GW7 911 aa22.58■■□□□ 1.21
CHMP1A-201ENST00000397901 IFT140Q96RY7 1462 aa22.55■■□□□ 1.2
CHMP1A-201ENST00000397901 GRIN2BQ13224 1484 aa22.54■■□□□ 1.2
CHMP1A-201ENST00000397901 PPP1R15AO75807 674 aaPredicted RBP22.53■■□□□ 1.2
CHMP1A-201ENST00000397901 LRRIQ1Q96JM4 1722 aa22.5■■□□□ 1.19
CHMP1A-201ENST00000397901 FKBP8Q14318 412 aa22.5■■□□□ 1.19
CHMP1A-201ENST00000397901 ZNF608Q9ULD9 1512 aaPredicted RBP22.5■■□□□ 1.19
CHMP1A-201ENST00000397901 ERICH6Q7L0X2 663 aa22.48■■□□□ 1.19
CHMP1A-201ENST00000397901 TIMELESSQ9UNS1 1208 aa22.48■■□□□ 1.19
CHMP1A-201ENST00000397901 IQGAP2Q13576 1575 aa22.47■■□□□ 1.19
CHMP1A-201ENST00000397901 THOC2Q8NI27 1593 aaKnown RBP22.47■■□□□ 1.19
CHMP1A-201ENST00000397901 TRIM52Q96A61 297 aa22.42■■□□□ 1.18
CHMP1A-201ENST00000397901 ANP32CO43423 234 aa22.42■■□□□ 1.18
CHMP1A-201ENST00000397901 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.41■■□□□ 1.183e-6■■■■□ 26.4
CHMP1A-201ENST00000397901 ERCC6Q03468 1493 aa22.41■■□□□ 1.18
CHMP1A-201ENST00000397901 EIF4G3O43432 1585 aaKnown RBP22.4■■□□□ 1.18
CHMP1A-201ENST00000397901 FGD6Q6ZV73 1430 aa22.4■■□□□ 1.18
CHMP1A-201ENST00000397901 TONSLQ96HA7 1378 aa22.39■■□□□ 1.18
CHMP1A-201ENST00000397901 MSH5O43196 834 aa22.39■■□□□ 1.18
CHMP1A-201ENST00000397901 MTUS2Q5JR59 1369 aa22.37■■□□□ 1.17
CHMP1A-201ENST00000397901 CCER2I3L3R5 266 aa22.37■■□□□ 1.17
CHMP1A-201ENST00000397901 MYT1LQ9UL68 1186 aa22.37■■□□□ 1.17
CHMP1A-201ENST00000397901 UGGT2Q9NYU1 1516 aa22.37■■□□□ 1.17
CHMP1A-201ENST00000397901 CCDC18Q5T9S5 1454 aa22.36■■□□□ 1.17
CHMP1A-201ENST00000397901 NEFLP07196 543 aa22.36■■□□□ 1.17
CHMP1A-201ENST00000397901 EHBP1L1Q8N3D4 1523 aa22.34■■□□□ 1.17
CHMP1A-201ENST00000397901 PTPRKQ15262 1439 aa22.33■■□□□ 1.17
CHMP1A-201ENST00000397901 FANCIQ9NVI1 1328 aa22.33■■□□□ 1.16
CHMP1A-201ENST00000397901 HECW1Q76N89 1606 aa22.32■■□□□ 1.16
CHMP1A-201ENST00000397901 NCOA2Q15596 1464 aa22.31■■□□□ 1.16
CHMP1A-201ENST00000397901 SUPT6HQ7KZ85 1726 aaKnown RBP22.31■■□□□ 1.16
CHMP1A-201ENST00000397901 KIAA0586Q9BVV6 1533 aa22.31■■□□□ 1.16
CHMP1A-201ENST00000397901 GRIN2AQ12879 1464 aa22.3■■□□□ 1.16
CHMP1A-201ENST00000397901 MAGI3Q5TCQ9 1506 aa22.3■■□□□ 1.16
CHMP1A-201ENST00000397901 UACAQ9BZF9 1416 aa22.29■■□□□ 1.16
CHMP1A-201ENST00000397901 HFM1A2PYH4 1435 aa22.28■■□□□ 1.16
CHMP1A-201ENST00000397901 ARHGEF11O15085 1522 aa22.28■■□□□ 1.16
CHMP1A-201ENST00000397901 MYOM3Q5VTT5 1437 aa22.27■■□□□ 1.16
CHMP1A-201ENST00000397901 PTPN23Q9H3S7 1636 aa22.27■■□□□ 1.16
CHMP1A-201ENST00000397901 MAGI1Q96QZ7 1491 aaPredicted RBP22.26■■□□□ 1.15
CHMP1A-201ENST00000397901 EPRSP07814 1512 aaKnown RBP22.25■■□□□ 1.15
CHMP1A-201ENST00000397901 DISP1Q96F81 1524 aa22.25■■□□□ 1.15
CHMP1A-201ENST00000397901 KIAA0556O60303 1618 aa22.25■■□□□ 1.15
CHMP1A-201ENST00000397901 NAIPQ13075 1403 aa22.23■■□□□ 1.15
CHMP1A-201ENST00000397901 SYNJ2O15056 1496 aa22.19■■□□□ 1.14
CHMP1A-201ENST00000397901 CDK13Q14004 1512 aaKnown RBP22.19■■□□□ 1.14
CHMP1A-201ENST00000397901 CEP170Q5SW79 1584 aa22.17■■□□□ 1.14
CHMP1A-201ENST00000397901 RRP7BPQ9NSQ0 103 aa22.16■■□□□ 1.14
CHMP1A-201ENST00000397901 CHIC2Q9UKJ5 165 aa22.15■■□□□ 1.14
CHMP1A-201ENST00000397901 KDM5BQ9UGL1 1544 aa22.14■■□□□ 1.14
CHMP1A-201ENST00000397901 TCOF1Q13428 1488 aaKnown RBP22.13■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms