RNA–Protein interactions for RNA: ENST00000397204.8

CAPN3-208, Transcript of calpain 3, humanhuman

TSL 1 (best) BASIC

Gene CAPN3, Length 1,237 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-208ENST00000397204 CLASP1Q7Z460 1538 aa15.78■□□□□ 0.12
CAPN3-208ENST00000397204 SYNJ1O43426 1573 aa15.78■□□□□ 0.12
CAPN3-208ENST00000397204 GAPVD1Q14C86 1478 aa15.78■□□□□ 0.12
CAPN3-208ENST00000397204 SUPT5HO00267 1087 aaKnown RBP15.77■□□□□ 0.12
CAPN3-208ENST00000397204 ABCA10Q8WWZ4 1543 aa15.73■□□□□ 0.11
CAPN3-208ENST00000397204 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.73■□□□□ 0.11
CAPN3-208ENST00000397204 WRNQ14191 1432 aaPredicted RBP eCLIP15.69■□□□□ 0.1
CAPN3-208ENST00000397204 SLC4A1APQ9BWU0 796 aaKnown RBP15.69■□□□□ 0.1
CAPN3-208ENST00000397204 RNF39Q9H2S5 420 aa15.69■□□□□ 0.1
CAPN3-208ENST00000397204 ABCA5Q8WWZ7 1642 aa15.63■□□□□ 0.09
CAPN3-208ENST00000397204 GRIN2AQ12879 1464 aa15.62■□□□□ 0.09
CAPN3-208ENST00000397204 PBRM1Q86U86 1689 aa15.61■□□□□ 0.09
CAPN3-208ENST00000397204 FHAD1B1AJZ9 1412 aa15.6■□□□□ 0.09
CAPN3-208ENST00000397204 NUP160Q12769 1436 aa15.59■□□□□ 0.09
CAPN3-208ENST00000397204 SLC4A2P04920 1241 aa15.58■□□□□ 0.08
CAPN3-208ENST00000397204 TOP2BQ02880 1626 aa15.54■□□□□ 0.08
CAPN3-208ENST00000397204 JPH4Q96JJ6 628 aa15.53■□□□□ 0.08
CAPN3-208ENST00000397204 ERICH3Q5RHP9 1530 aa15.52■□□□□ 0.07
CAPN3-208ENST00000397204 ADAMTS12P58397 1594 aa15.51■□□□□ 0.07
CAPN3-208ENST00000397204 CEP170Q5SW79 1584 aa15.51■□□□□ 0.07
CAPN3-208ENST00000397204 ERCC6L2Q5T890 1561 aa15.51■□□□□ 0.07
CAPN3-208ENST00000397204 BIVM-ERCC5R4GMW8 1640 aa15.5■□□□□ 0.07
CAPN3-208ENST00000397204 PRG4Q92954 1404 aaPredicted RBP15.48■□□□□ 0.07
CAPN3-208ENST00000397204 CACNB1Q02641 598 aaPredicted RBP15.47■□□□□ 0.07
CAPN3-208ENST00000397204 C1QBPQ07021 282 aaKnown RBP15.46■□□□□ 0.07
CAPN3-208ENST00000397204 U3KPZ7 1027 aaPredicted RBP15.46■□□□□ 0.07
CAPN3-208ENST00000397204 SHROOM2Q13796 1616 aa15.45■□□□□ 0.06
CAPN3-208ENST00000397204 NPM1P06748 294 aaKnown RBP eCLIP15.44■□□□□ 0.06
CAPN3-208ENST00000397204 IGF1RP08069 1367 aa15.39■□□□□ 0.05
CAPN3-208ENST00000397204 FAM69CQ0P6D2 419 aa15.38■□□□□ 0.05
CAPN3-208ENST00000397204 KIF27Q86VH2 1401 aa15.34■□□□□ 0.05
CAPN3-208ENST00000397204 KIAA0586Q9BVV6 1533 aa15.33■□□□□ 0.05
CAPN3-208ENST00000397204 ABCC10Q5T3U5 1492 aa15.32■□□□□ 0.04
CAPN3-208ENST00000397204 RUSC2Q8N2Y8 1516 aa15.28■□□□□ 0.04
CAPN3-208ENST00000397204 CARMIL1Q5VZK9 1371 aa15.26■□□□□ 0.03
CAPN3-208ENST00000397204 FOXD4L1Q9NU39 408 aa15.26■□□□□ 0.03
CAPN3-208ENST00000397204 MAPKBP1O60336 1514 aa15.26■□□□□ 0.03
CAPN3-208ENST00000397204 KIF13AQ9H1H9 1805 aa15.26■□□□□ 0.03
CAPN3-208ENST00000397204 PTPRGP23470 1445 aa15.26■□□□□ 0.03
CAPN3-208ENST00000397204 CARMIL2Q6F5E8 1435 aa15.21■□□□□ 0.03
CAPN3-208ENST00000397204 ZBTB22O15209 634 aa15.21■□□□□ 0.03
CAPN3-208ENST00000397204 ADCY10Q96PN6 1610 aa15.21■□□□□ 0.02
CAPN3-208ENST00000397204 CUL7Q14999 1698 aa15.2■□□□□ 0.02
CAPN3-208ENST00000397204 TNIKQ9UKE5 1360 aa15.2■□□□□ 0.02
CAPN3-208ENST00000397204 TTBK1Q5TCY1 1321 aaPredicted RBP15.18■□□□□ 0.02
CAPN3-208ENST00000397204 DIP2BQ9P265 1576 aa15.18■□□□□ 0.02
CAPN3-208ENST00000397204 MYCNP04198 464 aaPredicted RBP15.17■□□□□ 0.02
CAPN3-208ENST00000397204 ABCC2Q92887 1545 aa15.13■□□□□ 0.01
CAPN3-208ENST00000397204 KDM4FA0A1W2PPD8 638 aa15.13■□□□□ 0.01
CAPN3-208ENST00000397204 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.12■□□□□ 0.01
CAPN3-208ENST00000397204 HNRNPUL2Q1KMD3 747 aaKnown RBP15.12■□□□□ 0.01
CAPN3-208ENST00000397204 PLB1Q6P1J6 1458 aa15.12■□□□□ 0.01
CAPN3-208ENST00000397204 SPINK5Q9NQ38 1064 aaPredicted RBP15.11■□□□□ 0.01
CAPN3-208ENST00000397204 UACAQ9BZF9 1416 aa15.1■□□□□ 0.01
CAPN3-208ENST00000397204 UHRF1BP1LA0JNW5 1464 aa15.1■□□□□ 0.01
CAPN3-208ENST00000397204 ASXL2Q76L83 1435 aa15.09■□□□□ 0.01
CAPN3-208ENST00000397204 KDM6BO15054 1643 aa15.09■□□□□ 0.01
CAPN3-208ENST00000397204 IQGAP2Q13576 1575 aa15.08■□□□□ 0
CAPN3-208ENST00000397204 SAMD1Q6SPF0 538 aaPredicted RBP15.07■□□□□ 0
CAPN3-208ENST00000397204 RAPGEF2Q9Y4G8 1499 aa15.07■□□□□ 0
CAPN3-208ENST00000397204 CAPN15O75808 1086 aa15.06■□□□□ 0
CAPN3-208ENST00000397204 DISP1Q96F81 1524 aa15.06■□□□□ 0
CAPN3-208ENST00000397204 GLI2P10070 1586 aa15.05■□□□□ -0
CAPN3-208ENST00000397204 TSPOAP1O95153 1857 aa15.03■□□□□ -0
CAPN3-208ENST00000397204 UGGT2Q9NYU1 1516 aa15.02■□□□□ -0
CAPN3-208ENST00000397204 KDM5BQ9UGL1 1544 aa15.02■□□□□ -0
CAPN3-208ENST00000397204 APLP2Q06481 763 aa15.02■□□□□ -0
CAPN3-208ENST00000397204 EHMT2Q96KQ7 1210 aa15□□□□□ -0.01
CAPN3-208ENST00000397204 EPRSP07814 1512 aaKnown RBP14.99□□□□□ -0.01
CAPN3-208ENST00000397204 TEX14Q8IWB6 1497 aa14.95□□□□□ -0.02
CAPN3-208ENST00000397204 COL17A1Q9UMD9 1497 aaPredicted RBP14.95□□□□□ -0.02
CAPN3-208ENST00000397204 FAM9AQ8IZU1 332 aaPredicted RBP14.95□□□□□ -0.02
CAPN3-208ENST00000397204 KCNH8Q96L42 1107 aa14.93□□□□□ -0.02
CAPN3-208ENST00000397204 GOLGA3Q08378 1498 aa14.93□□□□□ -0.02
CAPN3-208ENST00000397204 KIAA0556O60303 1618 aa14.92□□□□□ -0.02
CAPN3-208ENST00000397204 PPRC1Q5VV67 1664 aaKnown RBP14.92□□□□□ -0.02
CAPN3-208ENST00000397204 WDR7Q9Y4E6 1490 aa14.91□□□□□ -0.02
CAPN3-208ENST00000397204 CSRNP3Q8WYN3 585 aa14.91□□□□□ -0.02
CAPN3-208ENST00000397204 ZCCHC11Q5TAX3 1644 aaKnown RBP14.89□□□□□ -0.03
CAPN3-208ENST00000397204 MAP3K4Q9Y6R4 1608 aa14.89□□□□□ -0.03
CAPN3-208ENST00000397204 CD109Q6YHK3 1445 aa14.89□□□□□ -0.03
CAPN3-208ENST00000397204 ZNF219Q9P2Y4 722 aaPredicted RBP14.88□□□□□ -0.03
CAPN3-208ENST00000397204 ADGRL1O94910 1474 aa14.88□□□□□ -0.03
CAPN3-208ENST00000397204 PRXQ9BXM0 1461 aa14.88□□□□□ -0.03
CAPN3-208ENST00000397204 DSG3P32926 999 aa14.85□□□□□ -0.03
CAPN3-208ENST00000397204 MAGI3Q5TCQ9 1506 aa14.85□□□□□ -0.03
CAPN3-208ENST00000397204 ABCA8O94911 1581 aa14.83□□□□□ -0.04
CAPN3-208ENST00000397204 ATF5Q9Y2D1 282 aaPredicted RBP14.83□□□□□ -0.04
CAPN3-208ENST00000397204 P3H3Q8IVL6 736 aa14.82□□□□□ -0.04
CAPN3-208ENST00000397204 ILDR1Q86SU0 546 aaPredicted RBP14.81□□□□□ -0.04
CAPN3-208ENST00000397204 PHLDB1Q86UU1 1377 aa14.79□□□□□ -0.04
CAPN3-208ENST00000397204 CTTNBP2Q8WZ74 1663 aa14.79□□□□□ -0.04
CAPN3-208ENST00000397204 ATP10BO94823 1461 aa14.78□□□□□ -0.04
CAPN3-208ENST00000397204 ARID3CA6NKF2 412 aa14.77□□□□□ -0.05
CAPN3-208ENST00000397204 ABCB7O75027 752 aa14.77□□□□□ -0.05
CAPN3-208ENST00000397204 CFAP43Q8NDM7 1665 aa14.76□□□□□ -0.05
CAPN3-208ENST00000397204 ARAP3Q8WWN8 1544 aa14.75□□□□□ -0.05
CAPN3-208ENST00000397204 ATXN8OSP0DMR3 200 aa14.71□□□□□ -0.05
CAPN3-208ENST00000397204 RAPGEF3O95398 923 aa14.7□□□□□ -0.06
CAPN3-208ENST00000397204 PLEKHD1A6NEE1 506 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms