RNA–Protein interactions for RNA: ENST00000397163.7

CAPN3-206, Transcript of calpain 3, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CAPN3, Length 3,228 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-206ENST00000397163 CUX2O14529 1486 aa13.04□□□□□ -0.32
CAPN3-206ENST00000397163 DDX10Q13206 875 aaKnown RBP13.03□□□□□ -0.32
CAPN3-206ENST00000397163 RAB3GAP2Q9H2M9 1393 aa13.03□□□□□ -0.32
CAPN3-206ENST00000397163 MSH5O43196 834 aa13.01□□□□□ -0.33
CAPN3-206ENST00000397163 KIF27Q86VH2 1401 aa13□□□□□ -0.33
CAPN3-206ENST00000397163 NEFLP07196 543 aa13□□□□□ -0.33
CAPN3-206ENST00000397163 BIVM-ERCC5R4GMW8 1640 aa12.98□□□□□ -0.33
CAPN3-206ENST00000397163 ERCC6Q03468 1493 aa12.98□□□□□ -0.33
CAPN3-206ENST00000397163 ARHGAP35Q9NRY4 1499 aa12.97□□□□□ -0.33
CAPN3-206ENST00000397163 SIN3AQ96ST3 1273 aa12.97□□□□□ -0.33
CAPN3-206ENST00000397163 FANCD2Q9BXW9 1451 aa12.97□□□□□ -0.33
CAPN3-206ENST00000397163 MAPKBP1O60336 1514 aa12.96□□□□□ -0.34
CAPN3-206ENST00000397163 SETD5Q9C0A6 1442 aa12.95□□□□□ -0.34
CAPN3-206ENST00000397163 FAM50AQ14320 339 aaKnown RBP12.94□□□□□ -0.34
CAPN3-206ENST00000397163 KIF21AQ7Z4S6 1674 aa12.93□□□□□ -0.34
CAPN3-206ENST00000397163 ERICH6Q7L0X2 663 aa12.93□□□□□ -0.34
CAPN3-206ENST00000397163 TRIM52Q96A61 297 aa12.93□□□□□ -0.34
CAPN3-206ENST00000397163 HIRIP3Q9BW71 556 aaPredicted RBP12.92□□□□□ -0.34
CAPN3-206ENST00000397163 CUX1P39880 1505 aa12.92□□□□□ -0.34
CAPN3-206ENST00000397163 ANP32CO43423 234 aa12.91□□□□□ -0.34
CAPN3-206ENST00000397163 PPP1R15AO75807 674 aaPredicted RBP12.91□□□□□ -0.34
CAPN3-206ENST00000397163 WDR97A6NE52 1622 aa12.9□□□□□ -0.34
CAPN3-206ENST00000397163 ANO8Q9HCE9 1232 aaPredicted RBP12.9□□□□□ -0.34
CAPN3-206ENST00000397163 DNMBPQ6XZF7 1577 aa12.89□□□□□ -0.35
CAPN3-206ENST00000397163 CCER2I3L3R5 266 aa12.88□□□□□ -0.35
CAPN3-206ENST00000397163 ATP1B4Q9UN42 357 aaPredicted RBP12.88□□□□□ -0.35
CAPN3-206ENST00000397163 PHLDB1Q86UU1 1377 aa12.87□□□□□ -0.35
CAPN3-206ENST00000397163 TIMELESSQ9UNS1 1208 aa12.86□□□□□ -0.35
CAPN3-206ENST00000397163 TIAM1Q13009 1591 aa12.86□□□□□ -0.35
CAPN3-206ENST00000397163 THOC2Q8NI27 1593 aaKnown RBP12.86□□□□□ -0.35
CAPN3-206ENST00000397163 WDR62O43379 1518 aa12.85□□□□□ -0.35
CAPN3-206ENST00000397163 MRC2Q9UBG0 1479 aa12.85□□□□□ -0.35
CAPN3-206ENST00000397163 LRRC9Q6ZRR7 1453 aa12.85□□□□□ -0.35
CAPN3-206ENST00000397163 DEKP35659 375 aaKnown RBP12.83□□□□□ -0.36
CAPN3-206ENST00000397163 P3H3Q8IVL6 736 aa12.83□□□□□ -0.36
CAPN3-206ENST00000397163 MAP3K1Q13233 1512 aa12.83□□□□□ -0.36
CAPN3-206ENST00000397163 IGF1RP08069 1367 aa12.83□□□□□ -0.36
CAPN3-206ENST00000397163 IRX6P78412 446 aaPredicted RBP12.82□□□□□ -0.36
CAPN3-206ENST00000397163 URB2Q14146 1524 aaKnown RBP12.82□□□□□ -0.36
CAPN3-206ENST00000397163 TOPBP1Q92547 1522 aa12.81□□□□□ -0.36
CAPN3-206ENST00000397163 CARMIL1Q5VZK9 1371 aa12.8□□□□□ -0.36
CAPN3-206ENST00000397163 TONSLQ96HA7 1378 aa12.79□□□□□ -0.36
CAPN3-206ENST00000397163 CCDC136Q96JN2 1154 aa12.79□□□□□ -0.36
CAPN3-206ENST00000397163 FHAD1B1AJZ9 1412 aa12.78□□□□□ -0.36
CAPN3-206ENST00000397163 NBR1Q14596 966 aa12.77□□□□□ -0.37
CAPN3-206ENST00000397163 HNRNPUQ00839 825 aaKnown RBP eCLIP12.75□□□□□ -0.37
CAPN3-206ENST00000397163 SALL2Q9Y467 1007 aaPredicted RBP12.75□□□□□ -0.37
CAPN3-206ENST00000397163 CDK11AQ9UQ88 783 aaPredicted RBP12.74□□□□□ -0.37
CAPN3-206ENST00000397163 TARBP1Q13395 1621 aaKnown RBP12.72□□□□□ -0.37
CAPN3-206ENST00000397163 FGD5Q6ZNL6 1462 aa12.72□□□□□ -0.37
CAPN3-206ENST00000397163 POLA1P09884 1462 aaPredicted RBP12.71□□□□□ -0.37
CAPN3-206ENST00000397163 RTN4Q9NQC3 1192 aaKnown RBP12.71□□□□□ -0.38
CAPN3-206ENST00000397163 ABCA10Q8WWZ4 1543 aa12.71□□□□□ -0.38
CAPN3-206ENST00000397163 PCF11O94913 1555 aaKnown RBP12.71□□□□□ -0.38
CAPN3-206ENST00000397163 FHOD3Q2V2M9 1422 aa12.7□□□□□ -0.38
CAPN3-206ENST00000397163 FANCIQ9NVI1 1328 aa12.69□□□□□ -0.38
CAPN3-206ENST00000397163 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.68□□□□□ -0.38
CAPN3-206ENST00000397163 CFAP43Q8NDM7 1665 aa12.68□□□□□ -0.38
CAPN3-206ENST00000397163 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.67□□□□□ -0.38
CAPN3-206ENST00000397163 CCDC18Q5T9S5 1454 aa12.67□□□□□ -0.38
CAPN3-206ENST00000397163 IFT140Q96RY7 1462 aa12.66□□□□□ -0.38
CAPN3-206ENST00000397163 ABCA5Q8WWZ7 1642 aa12.66□□□□□ -0.38
CAPN3-206ENST00000397163 FGD6Q6ZV73 1430 aa12.65□□□□□ -0.38
CAPN3-206ENST00000397163 UACAQ9BZF9 1416 aa12.65□□□□□ -0.39
CAPN3-206ENST00000397163 FYCO1Q9BQS8 1478 aa12.64□□□□□ -0.39
CAPN3-206ENST00000397163 CASKIN1Q8WXD9 1431 aa12.64□□□□□ -0.39
CAPN3-206ENST00000397163 RAD54L2Q9Y4B4 1467 aa12.63□□□□□ -0.39
CAPN3-206ENST00000397163 MTUS2Q5JR59 1369 aa12.63□□□□□ -0.39
CAPN3-206ENST00000397163 IL27Q8NEV9 243 aa12.62□□□□□ -0.39
CAPN3-206ENST00000397163 HFM1A2PYH4 1435 aa12.62□□□□□ -0.39
CAPN3-206ENST00000397163 HSPA5P11021 654 aaKnown RBP12.62□□□□□ -0.39
CAPN3-206ENST00000397163 PPP4R2Q9NY27 417 aa12.61□□□□□ -0.39
CAPN3-206ENST00000397163 WASHC2AQ641Q2 1341 aa12.61□□□□□ -0.39
CAPN3-206ENST00000397163 PTPRKQ15262 1439 aa12.61□□□□□ -0.39
CAPN3-206ENST00000397163 PAK3O75914 559 aaPredicted RBP12.6□□□□□ -0.39
CAPN3-206ENST00000397163 ERICH6BQ5W0A0 696 aa12.6□□□□□ -0.39
CAPN3-206ENST00000397163 AQRO60306 1485 aaKnown RBP eCLIP12.59□□□□□ -0.39
CAPN3-206ENST00000397163 EIF4G2P78344 907 aaKnown RBP eCLIP12.58□□□□□ -0.4
CAPN3-206ENST00000397163 NAIPQ13075 1403 aa12.58□□□□□ -0.4
CAPN3-206ENST00000397163 EFCAB5A4FU69 1503 aa12.58□□□□□ -0.4
CAPN3-206ENST00000397163 FAM9BQ8IZU0 186 aa12.58□□□□□ -0.4
CAPN3-206ENST00000397163 FMN1Q68DA7 1419 aa12.58□□□□□ -0.4
CAPN3-206ENST00000397163 TDRD9Q8NDG6 1382 aaKnown RBP12.57□□□□□ -0.4
CAPN3-206ENST00000397163 PTPN23Q9H3S7 1636 aa12.57□□□□□ -0.4
CAPN3-206ENST00000397163 CCDC184Q52MB2 194 aa12.56□□□□□ -0.4
CAPN3-206ENST00000397163 B4GALNT3Q6L9W6 998 aa12.56□□□□□ -0.4
CAPN3-206ENST00000397163 RRP7BPQ9NSQ0 103 aa12.56□□□□□ -0.4
CAPN3-206ENST00000397163 CUL7Q14999 1698 aa12.56□□□□□ -0.4
CAPN3-206ENST00000397163 PBRM1Q86U86 1689 aa12.56□□□□□ -0.4
CAPN3-206ENST00000397163 CHIC2Q9UKJ5 165 aa12.55□□□□□ -0.4
CAPN3-206ENST00000397163 MRS2Q9HD23 443 aa12.54□□□□□ -0.4
CAPN3-206ENST00000397163 NOP58Q9Y2X3 529 aaKnown RBP12.54□□□□□ -0.4
CAPN3-206ENST00000397163 ZNF608Q9ULD9 1512 aaPredicted RBP12.54□□□□□ -0.4
CAPN3-206ENST00000397163 MYT1LQ9UL68 1186 aa12.54□□□□□ -0.4
CAPN3-206ENST00000397163 EIF4G3O43432 1585 aaKnown RBP12.53□□□□□ -0.4
CAPN3-206ENST00000397163 MYOM3Q5VTT5 1437 aa12.53□□□□□ -0.4
CAPN3-206ENST00000397163 GAPVD1Q14C86 1478 aa12.52□□□□□ -0.4
CAPN3-206ENST00000397163 KDM5BQ9UGL1 1544 aa12.52□□□□□ -0.4
CAPN3-206ENST00000397163 CNTLNQ9NXG0 1405 aa12.52□□□□□ -0.4
CAPN3-206ENST00000397163 NCOA2Q15596 1464 aa12.52□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms