RNA–Protein interactions for RNA: ENST00000396354.5

NDE1-201, Transcript of nudE neurodevelopment protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NDE1, Length 3,221 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NDE1-201ENST00000396354 POLA1P09884 1462 aaPredicted RBP13.93□□□□□ -0.18
NDE1-201ENST00000396354 DNMBPQ6XZF7 1577 aa13.93□□□□□ -0.18
NDE1-201ENST00000396354 APLP2Q06481 763 aa13.93□□□□□ -0.18
NDE1-201ENST00000396354 KANK4Q5T7N3 995 aaPredicted RBP13.92□□□□□ -0.18
NDE1-201ENST00000396354 CENPBP07199 599 aaPredicted RBP13.92□□□□□ -0.18
NDE1-201ENST00000396354 ITGAEP38570 1179 aa13.91□□□□□ -0.18
NDE1-201ENST00000396354 PELP1Q8IZL8 1130 aaKnown RBP13.89□□□□□ -0.19
NDE1-201ENST00000396354 CARMIL1Q5VZK9 1371 aa13.89□□□□□ -0.19
NDE1-201ENST00000396354 MRC2Q9UBG0 1479 aa13.87□□□□□ -0.19
NDE1-201ENST00000396354 ABCA10Q8WWZ4 1543 aa13.86□□□□□ -0.19
NDE1-201ENST00000396354 PPP4R3CPQ6ZMV5 832 aa13.86□□□□□ -0.19
NDE1-201ENST00000396354 WDR97A6NE52 1622 aa13.84□□□□□ -0.19
NDE1-201ENST00000396354 MIER1Q8N108 512 aa13.83□□□□□ -0.19
NDE1-201ENST00000396354 ZNF316A6NFI3 1004 aaPredicted RBP13.82□□□□□ -0.2
NDE1-201ENST00000396354 THOC2Q8NI27 1593 aaKnown RBP13.81□□□□□ -0.2
NDE1-201ENST00000396354 WDR62O43379 1518 aa13.79□□□□□ -0.2
NDE1-201ENST00000396354 TDRD9Q8NDG6 1382 aaKnown RBP13.78□□□□□ -0.2
NDE1-201ENST00000396354 SLC4A1APQ9BWU0 796 aaKnown RBP13.78□□□□□ -0.2
NDE1-201ENST00000396354 P3H3Q8IVL6 736 aa13.77□□□□□ -0.2
NDE1-201ENST00000396354 ABCA5Q8WWZ7 1642 aa13.76□□□□□ -0.21
NDE1-201ENST00000396354 PIAS4Q8N2W9 510 aaPredicted RBP13.74□□□□□ -0.21
NDE1-201ENST00000396354 ATP1B4Q9UN42 357 aaPredicted RBP13.74□□□□□ -0.21
NDE1-201ENST00000396354 PCF11O94913 1555 aaKnown RBP13.74□□□□□ -0.21
NDE1-201ENST00000396354 FHOD3Q2V2M9 1422 aa13.74□□□□□ -0.21
NDE1-201ENST00000396354 NCBP3Q53F19 620 aaKnown RBP13.73□□□□□ -0.21
NDE1-201ENST00000396354 TIAM1Q13009 1591 aa13.72□□□□□ -0.21
NDE1-201ENST00000396354 CUL7Q14999 1698 aa13.72□□□□□ -0.21
NDE1-201ENST00000396354 TARBP1Q13395 1621 aaKnown RBP13.72□□□□□ -0.21
NDE1-201ENST00000396354 RRBP1Q9P2E9 1410 aaKnown RBP13.71□□□□□ -0.22
NDE1-201ENST00000396354 CTTNBP2Q8WZ74 1663 aa13.7□□□□□ -0.22
NDE1-201ENST00000396354 GAPVD1Q14C86 1478 aa13.69□□□□□ -0.22
NDE1-201ENST00000396354 ZNF608Q9ULD9 1512 aaPredicted RBP13.67□□□□□ -0.22
NDE1-201ENST00000396354 AQRO60306 1485 aaKnown RBP eCLIP13.66□□□□□ -0.228e-7■□□□□ 11.3
NDE1-201ENST00000396354 CFAP43Q8NDM7 1665 aa13.66□□□□□ -0.22
NDE1-201ENST00000396354 LRRC9Q6ZRR7 1453 aa13.66□□□□□ -0.22
NDE1-201ENST00000396354 PHLDB1Q86UU1 1377 aa13.66□□□□□ -0.22
NDE1-201ENST00000396354 IFT140Q96RY7 1462 aa13.65□□□□□ -0.22
NDE1-201ENST00000396354 LRRIQ1Q96JM4 1722 aa13.64□□□□□ -0.23
NDE1-201ENST00000396354 CCNB3Q8WWL7 1395 aa13.64□□□□□ -0.23
NDE1-201ENST00000396354 DHX57Q6P158 1386 aaKnown RBP13.63□□□□□ -0.23
NDE1-201ENST00000396354 MAP3K1Q13233 1512 aa13.61□□□□□ -0.23
NDE1-201ENST00000396354 PBRM1Q86U86 1689 aa13.61□□□□□ -0.23
NDE1-201ENST00000396354 SNAPC4Q5SXM2 1469 aa13.61□□□□□ -0.23
NDE1-201ENST00000396354 SAMD9Q5K651 1589 aa13.6□□□□□ -0.23
NDE1-201ENST00000396354 EFCAB5A4FU69 1503 aa13.6□□□□□ -0.23
NDE1-201ENST00000396354 FHAD1B1AJZ9 1412 aa13.59□□□□□ -0.23
NDE1-201ENST00000396354 EIF4G3O43432 1585 aaKnown RBP13.58□□□□□ -0.24
NDE1-201ENST00000396354 HIRIP3Q9BW71 556 aaPredicted RBP13.58□□□□□ -0.24
NDE1-201ENST00000396354 FYCO1Q9BQS8 1478 aa13.57□□□□□ -0.24
NDE1-201ENST00000396354 CASKIN1Q8WXD9 1431 aa13.57□□□□□ -0.24
NDE1-201ENST00000396354 BCANQ96GW7 911 aa13.56□□□□□ -0.24
NDE1-201ENST00000396354 ADAMTS12P58397 1594 aa13.55□□□□□ -0.24
NDE1-201ENST00000396354 GRIN2BQ13224 1484 aa13.53□□□□□ -0.24
NDE1-201ENST00000396354 NPM3O75607 178 aaKnown RBP13.51□□□□□ -0.25
NDE1-201ENST00000396354 RAB3GAP2Q9H2M9 1393 aa13.51□□□□□ -0.25
NDE1-201ENST00000396354 KCNH8Q96L42 1107 aa13.51□□□□□ -0.25
NDE1-201ENST00000396354 MAGI3Q5TCQ9 1506 aa13.51□□□□□ -0.25
NDE1-201ENST00000396354 FAM50AQ14320 339 aaKnown RBP13.51□□□□□ -0.25
NDE1-201ENST00000396354 MAPKBP1O60336 1514 aa13.5□□□□□ -0.25
NDE1-201ENST00000396354 FMN1Q68DA7 1419 aa13.49□□□□□ -0.25
NDE1-201ENST00000396354 MYT1Q01538 1121 aa13.48□□□□□ -0.25
NDE1-201ENST00000396354 FBLN2P98095 1184 aa13.47□□□□□ -0.25
NDE1-201ENST00000396354 IQGAP2Q13576 1575 aa13.46□□□□□ -0.25
NDE1-201ENST00000396354 PTPRKQ15262 1439 aa13.45□□□□□ -0.26
NDE1-201ENST00000396354 ARID3CA6NKF2 412 aa13.43□□□□□ -0.26
NDE1-201ENST00000396354 FGD6Q6ZV73 1430 aa13.43□□□□□ -0.26
NDE1-201ENST00000396354 SETD5Q9C0A6 1442 aa13.42□□□□□ -0.26
NDE1-201ENST00000396354 CHMP7Q8WUX9 453 aaPredicted RBP13.42□□□□□ -0.26
NDE1-201ENST00000396354 NCOA2Q15596 1464 aa13.42□□□□□ -0.26
NDE1-201ENST00000396354 CDK13Q14004 1512 aaKnown RBP13.42□□□□□ -0.26
NDE1-201ENST00000396354 SIN3AQ96ST3 1273 aa13.41□□□□□ -0.26
NDE1-201ENST00000396354 MAGI1Q96QZ7 1491 aaPredicted RBP13.41□□□□□ -0.26
NDE1-201ENST00000396354 MTUS2Q5JR59 1369 aa13.41□□□□□ -0.26
NDE1-201ENST00000396354 DDX10Q13206 875 aaKnown RBP13.41□□□□□ -0.26
NDE1-201ENST00000396354 CLSPNQ9HAW4 1339 aa13.4□□□□□ -0.26
NDE1-201ENST00000396354 DISP1Q96F81 1524 aa13.39□□□□□ -0.27
NDE1-201ENST00000396354 SYNJ2O15056 1496 aa13.38□□□□□ -0.27
NDE1-201ENST00000396354 GRIN2AQ12879 1464 aa13.38□□□□□ -0.27
NDE1-201ENST00000396354 CNGB1Q14028 1251 aaPredicted RBP13.38□□□□□ -0.27
NDE1-201ENST00000396354 ARHGEF11O15085 1522 aa13.38□□□□□ -0.27
NDE1-201ENST00000396354 UGGT2Q9NYU1 1516 aa13.37□□□□□ -0.27
NDE1-201ENST00000396354 EPRSP07814 1512 aaKnown RBP13.36□□□□□ -0.27
NDE1-201ENST00000396354 SUPT6HQ7KZ85 1726 aaKnown RBP13.36□□□□□ -0.27
NDE1-201ENST00000396354 EHBP1L1Q8N3D4 1523 aa13.36□□□□□ -0.27
NDE1-201ENST00000396354 CEP170Q5SW79 1584 aa13.35□□□□□ -0.27
NDE1-201ENST00000396354 KIAA0556O60303 1618 aa13.35□□□□□ -0.27
NDE1-201ENST00000396354 CNKSR2Q8WXI2 1034 aa13.35□□□□□ -0.27
NDE1-201ENST00000396354 MYOM3Q5VTT5 1437 aa13.35□□□□□ -0.27
NDE1-201ENST00000396354 HECW1Q76N89 1606 aa13.34□□□□□ -0.27
NDE1-201ENST00000396354 TRIM52Q96A61 297 aa13.34□□□□□ -0.27
NDE1-201ENST00000396354 CHD1O14646 1710 aa13.34□□□□□ -0.27
NDE1-201ENST00000396354 SUPT16HQ9Y5B9 1047 aaKnown RBP13.33□□□□□ -0.28
NDE1-201ENST00000396354 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.33□□□□□ -0.28
NDE1-201ENST00000396354 PTPN23Q9H3S7 1636 aa13.33□□□□□ -0.28
NDE1-201ENST00000396354 KIAA0586Q9BVV6 1533 aa13.32□□□□□ -0.28
NDE1-201ENST00000396354 NUP153P49790 1475 aaKnown RBP13.3□□□□□ -0.28
NDE1-201ENST00000396354 CCDC18Q5T9S5 1454 aa13.3□□□□□ -0.28
NDE1-201ENST00000396354 KDM6BO15054 1643 aa13.3□□□□□ -0.28
NDE1-201ENST00000396354 NAIPQ13075 1403 aa13.29□□□□□ -0.28
NDE1-201ENST00000396354 HFM1A2PYH4 1435 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms