RNA–Protein interactions for RNA: ENST00000380469.7

VPS16-203, Transcript of VPS16, CORVET/HOPS core subunit, humanhuman

TSL 2 BASIC

Gene VPS16, Length 2,318 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS16-203ENST00000380469 RAB3GAP2Q9H2M9 1393 aa23.72■■□□□ 1.39
VPS16-203ENST00000380469 ABCA10Q8WWZ4 1543 aa23.68■■□□□ 1.38
VPS16-203ENST00000380469 SETD5Q9C0A6 1442 aa23.67■■□□□ 1.38
VPS16-203ENST00000380469 P3H3Q8IVL6 736 aa23.66■■□□□ 1.38
VPS16-203ENST00000380469 CFAP43Q8NDM7 1665 aa23.66■■□□□ 1.38
VPS16-203ENST00000380469 RAD54L2Q9Y4B4 1467 aa23.65■■□□□ 1.38
VPS16-203ENST00000380469 PHLDB1Q86UU1 1377 aa23.65■■□□□ 1.38
VPS16-203ENST00000380469 TOPBP1Q92547 1522 aa23.64■■□□□ 1.38
VPS16-203ENST00000380469 ATP1B4Q9UN42 357 aaPredicted RBP23.64■■□□□ 1.37
VPS16-203ENST00000380469 PCF11O94913 1555 aaKnown RBP23.64■■□□□ 1.37
VPS16-203ENST00000380469 POLA1P09884 1462 aaPredicted RBP23.63■■□□□ 1.37
VPS16-203ENST00000380469 FAM50AQ14320 339 aaKnown RBP23.62■■□□□ 1.37
VPS16-203ENST00000380469 EFCAB5A4FU69 1503 aa23.61■■□□□ 1.37
VPS16-203ENST00000380469 CUL7Q14999 1698 aa23.6■■□□□ 1.37
VPS16-203ENST00000380469 MAPKBP1O60336 1514 aa23.59■■□□□ 1.37
VPS16-203ENST00000380469 FYCO1Q9BQS8 1478 aa23.58■■□□□ 1.37
VPS16-203ENST00000380469 FHOD3Q2V2M9 1422 aa23.58■■□□□ 1.37
VPS16-203ENST00000380469 CASKIN1Q8WXD9 1431 aa23.56■■□□□ 1.36
VPS16-203ENST00000380469 AQRO60306 1485 aaKnown RBP eCLIP23.55■■□□□ 1.361e-9■■■■■ 26.8
VPS16-203ENST00000380469 NESP48681 1621 aa23.54■■□□□ 1.36
VPS16-203ENST00000380469 CTTNBP2Q8WZ74 1663 aa23.53■■□□□ 1.36
VPS16-203ENST00000380469 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.49■■□□□ 1.35
VPS16-203ENST00000380469 FMN1Q68DA7 1419 aa23.48■■□□□ 1.35
VPS16-203ENST00000380469 LAMC3Q9Y6N6 1575 aa23.46■■□□□ 1.35
VPS16-203ENST00000380469 TIMELESSQ9UNS1 1208 aa23.44■■□□□ 1.34
VPS16-203ENST00000380469 URB2Q14146 1524 aaKnown RBP23.42■■□□□ 1.34
VPS16-203ENST00000380469 SIN3AQ96ST3 1273 aa23.42■■□□□ 1.34
VPS16-203ENST00000380469 WDR97A6NE52 1622 aa23.42■■□□□ 1.34
VPS16-203ENST00000380469 FGD6Q6ZV73 1430 aa23.37■■□□□ 1.33
VPS16-203ENST00000380469 SNAPC4Q5SXM2 1469 aa23.37■■□□□ 1.33
VPS16-203ENST00000380469 MTUS2Q5JR59 1369 aa23.37■■□□□ 1.33
VPS16-203ENST00000380469 TDRD9Q8NDG6 1382 aaKnown RBP23.36■■□□□ 1.33
VPS16-203ENST00000380469 ABCA5Q8WWZ7 1642 aa23.36■■□□□ 1.33
VPS16-203ENST00000380469 GAPVD1Q14C86 1478 aa23.35■■□□□ 1.33
VPS16-203ENST00000380469 PDS5BQ9NTI5 1447 aa23.34■■□□□ 1.33
VPS16-203ENST00000380469 SAMD9Q5K651 1589 aa23.33■■□□□ 1.33
VPS16-203ENST00000380469 PPP1R15AO75807 674 aaPredicted RBP23.28■■□□□ 1.32
VPS16-203ENST00000380469 DDX10Q13206 875 aaKnown RBP23.26■■□□□ 1.31
VPS16-203ENST00000380469 GRIN2BQ13224 1484 aa23.26■■□□□ 1.31
VPS16-203ENST00000380469 THOC2Q8NI27 1593 aaKnown RBP23.25■■□□□ 1.31
VPS16-203ENST00000380469 CCDC18Q5T9S5 1454 aa23.24■■□□□ 1.31
VPS16-203ENST00000380469 SUPT16HQ9Y5B9 1047 aaKnown RBP23.24■■□□□ 1.31
VPS16-203ENST00000380469 HFM1A2PYH4 1435 aa23.23■■□□□ 1.31
VPS16-203ENST00000380469 NCOA2Q15596 1464 aa23.23■■□□□ 1.31
VPS16-203ENST00000380469 MYOM3Q5VTT5 1437 aa23.22■■□□□ 1.31
VPS16-203ENST00000380469 LRRIQ1Q96JM4 1722 aa23.22■■□□□ 1.31
VPS16-203ENST00000380469 SUPT6HQ7KZ85 1726 aaKnown RBP23.21■■□□□ 1.31
VPS16-203ENST00000380469 UACAQ9BZF9 1416 aa23.2■■□□□ 1.31
VPS16-203ENST00000380469 TONSLQ96HA7 1378 aa23.2■■□□□ 1.3
VPS16-203ENST00000380469 KCNH8Q96L42 1107 aa23.2■■□□□ 1.3
VPS16-203ENST00000380469 EHBP1L1Q8N3D4 1523 aa23.19■■□□□ 1.3
VPS16-203ENST00000380469 PTPRKQ15262 1439 aa23.19■■□□□ 1.3
VPS16-203ENST00000380469 PTPN23Q9H3S7 1636 aa23.19■■□□□ 1.3
VPS16-203ENST00000380469 KIF21AQ7Z4S6 1674 aa23.17■■□□□ 1.3
VPS16-203ENST00000380469 NAIPQ13075 1403 aa23.14■■□□□ 1.3
VPS16-203ENST00000380469 TARBP1Q13395 1621 aaKnown RBP23.14■■□□□ 1.3
VPS16-203ENST00000380469 UGGT2Q9NYU1 1516 aa23.12■■□□□ 1.29
VPS16-203ENST00000380469 HIRIP3Q9BW71 556 aaPredicted RBP23.11■■□□□ 1.29
VPS16-203ENST00000380469 ANP32CO43423 234 aa23.08■■□□□ 1.29
VPS16-203ENST00000380469 ARHGEF11O15085 1522 aa23.08■■□□□ 1.29
VPS16-203ENST00000380469 DNAJC5BQ9UF47 199 aa23.08■■□□□ 1.28
VPS16-203ENST00000380469 CCER2I3L3R5 266 aa23.07■■□□□ 1.28
VPS16-203ENST00000380469 MYT1Q01538 1121 aa23.07■■□□□ 1.28
VPS16-203ENST00000380469 HECW1Q76N89 1606 aa23.07■■□□□ 1.28
VPS16-203ENST00000380469 PBRM1Q86U86 1689 aa23.06■■□□□ 1.28
VPS16-203ENST00000380469 MAGI3Q5TCQ9 1506 aa23.04■■□□□ 1.28
VPS16-203ENST00000380469 IQGAP2Q13576 1575 aa23.04■■□□□ 1.28
VPS16-203ENST00000380469 TCOF1Q13428 1488 aaKnown RBP23.03■■□□□ 1.28
VPS16-203ENST00000380469 RRP7BPQ9NSQ0 103 aa23■■□□□ 1.27
VPS16-203ENST00000380469 EPRSP07814 1512 aaKnown RBP23■■□□□ 1.27
VPS16-203ENST00000380469 ADAMTS12P58397 1594 aa22.99■■□□□ 1.27
VPS16-203ENST00000380469 CHIC2Q9UKJ5 165 aa22.98■■□□□ 1.27
VPS16-203ENST00000380469 GCC2Q8IWJ2 1684 aa22.96■■□□□ 1.27
VPS16-203ENST00000380469 AKNAQ7Z591 1439 aa22.96■■□□□ 1.27
VPS16-203ENST00000380469 MIA2Q96PC5 1412 aa22.96■■□□□ 1.27
VPS16-203ENST00000380469 TRIM52Q96A61 297 aa22.95■■□□□ 1.26
VPS16-203ENST00000380469 MRC2Q9UBG0 1479 aa22.94■■□□□ 1.26
VPS16-203ENST00000380469 WDR62O43379 1518 aa22.92■■□□□ 1.26
VPS16-203ENST00000380469 CDK13Q14004 1512 aaKnown RBP22.91■■□□□ 1.26
VPS16-203ENST00000380469 KDM5BQ9UGL1 1544 aa22.91■■□□□ 1.26
VPS16-203ENST00000380469 FKBP8Q14318 412 aa22.87■■□□□ 1.25
VPS16-203ENST00000380469 ARID3CA6NKF2 412 aa22.86■■□□□ 1.25
VPS16-203ENST00000380469 MPHOSPH9Q99550 1183 aa22.86■■□□□ 1.25
VPS16-203ENST00000380469 NEFLP07196 543 aa22.85■■□□□ 1.25
VPS16-203ENST00000380469 IFT140Q96RY7 1462 aa22.84■■□□□ 1.25
VPS16-203ENST00000380469 DENND4BO75064 1496 aaPredicted RBP22.83■■□□□ 1.25
VPS16-203ENST00000380469 KDM6BO15054 1643 aa22.83■■□□□ 1.25
VPS16-203ENST00000380469 TSHZ2Q9NRE2 1034 aa22.82■■□□□ 1.24
VPS16-203ENST00000380469 HSPA5P11021 654 aaKnown RBP22.81■■□□□ 1.24
VPS16-203ENST00000380469 KIAA0586Q9BVV6 1533 aa22.81■■□□□ 1.24
VPS16-203ENST00000380469 BCANQ96GW7 911 aa22.8■■□□□ 1.24
VPS16-203ENST00000380469 ROCK1Q13464 1354 aa22.79■■□□□ 1.24
VPS16-203ENST00000380469 EIF4G2P78344 907 aaKnown RBP eCLIP22.79■■□□□ 1.24
VPS16-203ENST00000380469 ZNF608Q9ULD9 1512 aaPredicted RBP22.78■■□□□ 1.24
VPS16-203ENST00000380469 CDK11AQ9UQ88 783 aaPredicted RBP22.77■■□□□ 1.24
VPS16-203ENST00000380469 KIAA0556O60303 1618 aa22.77■■□□□ 1.24
VPS16-203ENST00000380469 DAPK1P53355 1430 aa22.77■■□□□ 1.24
VPS16-203ENST00000380469 DISP1Q96F81 1524 aa22.75■■□□□ 1.23
VPS16-203ENST00000380469 WASHC2AQ641Q2 1341 aa22.75■■□□□ 1.23
VPS16-203ENST00000380469 L3MBTL2Q969R5 705 aa22.74■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms