RNA–Protein interactions for RNA: ENST00000379433.5

NEDD9-201, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best) BASIC

Gene NEDD9, Length 3,341 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-201ENST00000379433 PLEKHG5O94827 1062 aa16.09■□□□□ 0.17
NEDD9-201ENST00000379433 ARHGAP35Q9NRY4 1499 aa16.07■□□□□ 0.16
NEDD9-201ENST00000379433 ERICH3Q5RHP9 1530 aa16.06■□□□□ 0.16
NEDD9-201ENST00000379433 FHOD3Q2V2M9 1422 aa16.06■□□□□ 0.16
NEDD9-201ENST00000379433 DNMBPQ6XZF7 1577 aa16.05■□□□□ 0.16
NEDD9-201ENST00000379433 AQRO60306 1485 aaKnown RBP eCLIP16.05■□□□□ 0.163e-8■■■□□ 16.2
NEDD9-201ENST00000379433 NCBP3Q53F19 620 aaKnown RBP16.03■□□□□ 0.16
NEDD9-201ENST00000379433 PRDM2Q13029 1718 aa16.02■□□□□ 0.16
NEDD9-201ENST00000379433 RTN4Q9NQC3 1192 aaKnown RBP16.02■□□□□ 0.16
NEDD9-201ENST00000379433 ERCC6Q03468 1493 aa16.01■□□□□ 0.15
NEDD9-201ENST00000379433 LAMC3Q9Y6N6 1575 aa16■□□□□ 0.15
NEDD9-201ENST00000379433 KIF21AQ7Z4S6 1674 aa15.99■□□□□ 0.15
NEDD9-201ENST00000379433 GAPVD1Q14C86 1478 aa15.98■□□□□ 0.15
NEDD9-201ENST00000379433 ABCA10Q8WWZ4 1543 aa15.97■□□□□ 0.15
NEDD9-201ENST00000379433 ZNF608Q9ULD9 1512 aaPredicted RBP15.9■□□□□ 0.14
NEDD9-201ENST00000379433 CHMP7Q8WUX9 453 aaPredicted RBP15.89■□□□□ 0.13
NEDD9-201ENST00000379433 CCNB3Q8WWL7 1395 aa15.87■□□□□ 0.13
NEDD9-201ENST00000379433 DIEXFQ68CQ4 756 aaKnown RBP15.86■□□□□ 0.13
NEDD9-201ENST00000379433 NEUROD1Q13562 356 aa15.86■□□□□ 0.13
NEDD9-201ENST00000379433 MTUS2Q5JR59 1369 aa15.84■□□□□ 0.13
NEDD9-201ENST00000379433 PHLDB1Q86UU1 1377 aa15.84■□□□□ 0.13
NEDD9-201ENST00000379433 CHIC2Q9UKJ5 165 aa15.83■□□□□ 0.13
NEDD9-201ENST00000379433 MRC2Q9UBG0 1479 aa15.83■□□□□ 0.12
NEDD9-201ENST00000379433 FHAD1B1AJZ9 1412 aa15.82■□□□□ 0.12
NEDD9-201ENST00000379433 YTHDC1Q96MU7 727 aaKnown RBP15.79■□□□□ 0.12
NEDD9-201ENST00000379433 DNAJC5Q9H3Z4 198 aa15.79■□□□□ 0.12
NEDD9-201ENST00000379433 PCF11O94913 1555 aaKnown RBP15.77■□□□□ 0.12
NEDD9-201ENST00000379433 LRRC9Q6ZRR7 1453 aa15.76■□□□□ 0.11
NEDD9-201ENST00000379433 ZNF316A6NFI3 1004 aaPredicted RBP15.74■□□□□ 0.11
NEDD9-201ENST00000379433 KLHL34Q8N239 644 aa15.74■□□□□ 0.11
NEDD9-201ENST00000379433 SIN3AQ96ST3 1273 aa15.74■□□□□ 0.11
NEDD9-201ENST00000379433 TIAM1Q13009 1591 aa15.73■□□□□ 0.11
NEDD9-201ENST00000379433 RRP7BPQ9NSQ0 103 aa15.73■□□□□ 0.11
NEDD9-201ENST00000379433 RAB3GAP2Q9H2M9 1393 aa15.72■□□□□ 0.11
NEDD9-201ENST00000379433 CUL7Q14999 1698 aa15.72■□□□□ 0.11
NEDD9-201ENST00000379433 FMN1Q68DA7 1419 aa15.71■□□□□ 0.11
NEDD9-201ENST00000379433 TARBP1Q13395 1621 aaKnown RBP15.71■□□□□ 0.11
NEDD9-201ENST00000379433 ABCA5Q8WWZ7 1642 aa15.71■□□□□ 0.11
NEDD9-201ENST00000379433 ZNF777Q9ULD5 760 aaPredicted RBP15.71■□□□□ 0.11
NEDD9-201ENST00000379433 DHX57Q6P158 1386 aaKnown RBP15.71■□□□□ 0.1
NEDD9-201ENST00000379433 SNAPC4Q5SXM2 1469 aa15.7■□□□□ 0.1
NEDD9-201ENST00000379433 TIMELESSQ9UNS1 1208 aa15.7■□□□□ 0.1
NEDD9-201ENST00000379433 GRIN2BQ13224 1484 aa15.7■□□□□ 0.1
NEDD9-201ENST00000379433 RRBP1Q9P2E9 1410 aaKnown RBP15.69■□□□□ 0.1
NEDD9-201ENST00000379433 HIRIP3Q9BW71 556 aaPredicted RBP15.68■□□□□ 0.1
NEDD9-201ENST00000379433 CASKIN1Q8WXD9 1431 aa15.67■□□□□ 0.1
NEDD9-201ENST00000379433 PODXL2Q9NZ53 605 aa15.66■□□□□ 0.1
NEDD9-201ENST00000379433 TRIM52Q96A61 297 aa15.66■□□□□ 0.1
NEDD9-201ENST00000379433 IFT140Q96RY7 1462 aa15.66■□□□□ 0.1
NEDD9-201ENST00000379433 WDR97A6NE52 1622 aa15.65■□□□□ 0.1
NEDD9-201ENST00000379433 CTTNBP2Q8WZ74 1663 aa15.64■□□□□ 0.09
NEDD9-201ENST00000379433 JPH4Q96JJ6 628 aa15.63■□□□□ 0.09
NEDD9-201ENST00000379433 FYCO1Q9BQS8 1478 aa15.62■□□□□ 0.09
NEDD9-201ENST00000379433 CDK13Q14004 1512 aaKnown RBP15.61■□□□□ 0.09
NEDD9-201ENST00000379433 EFCAB5A4FU69 1503 aa15.6■□□□□ 0.09
NEDD9-201ENST00000379433 ZNF644Q9H582 1327 aaPredicted RBP15.6■□□□□ 0.09
NEDD9-201ENST00000379433 PBRM1Q86U86 1689 aa15.6■□□□□ 0.09
NEDD9-201ENST00000379433 SETD5Q9C0A6 1442 aa15.59■□□□□ 0.09
NEDD9-201ENST00000379433 MIER1Q8N108 512 aa15.59■□□□□ 0.09
NEDD9-201ENST00000379433 IQGAP2Q13576 1575 aa15.57■□□□□ 0.08
NEDD9-201ENST00000379433 FOXD1Q16676 465 aa15.57■□□□□ 0.08
NEDD9-201ENST00000379433 ARXQ96QS3 562 aa15.57■□□□□ 0.08
NEDD9-201ENST00000379433 WDR62O43379 1518 aa15.57■□□□□ 0.08
NEDD9-201ENST00000379433 EIF4G3O43432 1585 aaKnown RBP15.56■□□□□ 0.08
NEDD9-201ENST00000379433 NCOA2Q15596 1464 aa15.56■□□□□ 0.08
NEDD9-201ENST00000379433 ADAMTS12P58397 1594 aa15.56■□□□□ 0.08
NEDD9-201ENST00000379433 FGD6Q6ZV73 1430 aa15.55■□□□□ 0.08
NEDD9-201ENST00000379433 SCAF1Q9H7N4 1312 aaKnown RBP15.55■□□□□ 0.08
NEDD9-201ENST00000379433 GRIN2AQ12879 1464 aa15.54■□□□□ 0.08
NEDD9-201ENST00000379433 CDK11AQ9UQ88 783 aaPredicted RBP15.51■□□□□ 0.07
NEDD9-201ENST00000379433 PTPRKQ15262 1439 aa15.5■□□□□ 0.07
NEDD9-201ENST00000379433 PLB1Q6P1J6 1458 aa15.5■□□□□ 0.07
NEDD9-201ENST00000379433 KCNH8Q96L42 1107 aa15.5■□□□□ 0.07
NEDD9-201ENST00000379433 CFDP1Q9UEE9 299 aaPredicted RBP15.49■□□□□ 0.07
NEDD9-201ENST00000379433 TULP1O00294 542 aaPredicted RBP15.49■□□□□ 0.07
NEDD9-201ENST00000379433 EPRSP07814 1512 aaKnown RBP15.48■□□□□ 0.07
NEDD9-201ENST00000379433 MAGI3Q5TCQ9 1506 aa15.48■□□□□ 0.07
NEDD9-201ENST00000379433 KIAA0586Q9BVV6 1533 aa15.48■□□□□ 0.07
NEDD9-201ENST00000379433 SAMD9Q5K651 1589 aa15.48■□□□□ 0.07
NEDD9-201ENST00000379433 MYOM3Q5VTT5 1437 aa15.48■□□□□ 0.07
NEDD9-201ENST00000379433 MAP3K1Q13233 1512 aa15.48■□□□□ 0.07
NEDD9-201ENST00000379433 CFAP43Q8NDM7 1665 aa15.47■□□□□ 0.07
NEDD9-201ENST00000379433 PRG4Q92954 1404 aaPredicted RBP15.47■□□□□ 0.07
NEDD9-201ENST00000379433 PLEKHD1A6NEE1 506 aa15.45■□□□□ 0.06
NEDD9-201ENST00000379433 THOC2Q8NI27 1593 aaKnown RBP15.45■□□□□ 0.06
NEDD9-201ENST00000379433 SYNJ2O15056 1496 aa15.45■□□□□ 0.06
NEDD9-201ENST00000379433 CENPBP07199 599 aaPredicted RBP15.44■□□□□ 0.06
NEDD9-201ENST00000379433 DISP1Q96F81 1524 aa15.44■□□□□ 0.06
NEDD9-201ENST00000379433 LRRIQ1Q96JM4 1722 aa15.44■□□□□ 0.06
NEDD9-201ENST00000379433 DDX10Q13206 875 aaKnown RBP15.42■□□□□ 0.06
NEDD9-201ENST00000379433 CLSPNQ9HAW4 1339 aa15.42■□□□□ 0.06
NEDD9-201ENST00000379433 CNGB1Q14028 1251 aaPredicted RBP15.42■□□□□ 0.06
NEDD9-201ENST00000379433 AEBP2Q6ZN18 517 aaPredicted RBP15.42■□□□□ 0.06
NEDD9-201ENST00000379433 CARMIL2Q6F5E8 1435 aa15.41■□□□□ 0.06
NEDD9-201ENST00000379433 CEP170Q5SW79 1584 aa15.4■□□□□ 0.06
NEDD9-201ENST00000379433 MAGI1Q96QZ7 1491 aaPredicted RBP15.4■□□□□ 0.06
NEDD9-201ENST00000379433 TONSLQ96HA7 1378 aa15.4■□□□□ 0.06
NEDD9-201ENST00000379433 ZNF326Q5BKZ1 582 aaKnown RBP15.4■□□□□ 0.06
NEDD9-201ENST00000379433 CCDC18Q5T9S5 1454 aa15.4■□□□□ 0.06
NEDD9-201ENST00000379433 NUP153P49790 1475 aaKnown RBP15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms