RNA–Protein interactions for RNA: ENST00000379340.9

POLR2J3-201, Transcript of RNA polymerase II subunit J3, humanhuman

TSL 1 (best)

Gene POLR2J3, Length 1,598 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
POLR2J3-201ENST00000379340 CLIP1P30622 1438 aa16.28■□□□□ 0.2
POLR2J3-201ENST00000379340 GAPVD1Q14C86 1478 aa16.26■□□□□ 0.19
POLR2J3-201ENST00000379340 MAGI1Q96QZ7 1491 aaPredicted RBP16.26■□□□□ 0.19
POLR2J3-201ENST00000379340 SYNJ2O15056 1496 aa16.23■□□□□ 0.19
POLR2J3-201ENST00000379340 GRIN2BQ13224 1484 aa16.23■□□□□ 0.19
POLR2J3-201ENST00000379340 VPS8Q8N3P4 1428 aa16.22■□□□□ 0.19
POLR2J3-201ENST00000379340 ZEB1P37275 1124 aaPredicted RBP16.21■□□□□ 0.18
POLR2J3-201ENST00000379340 ERCC6L2Q5T890 1561 aa16.21■□□□□ 0.18
POLR2J3-201ENST00000379340 WDR97A6NE52 1622 aa16.2■□□□□ 0.18
POLR2J3-201ENST00000379340 ABCA10Q8WWZ4 1543 aa16.15■□□□□ 0.18
POLR2J3-201ENST00000379340 PBRM1Q86U86 1689 aa16.14■□□□□ 0.18
POLR2J3-201ENST00000379340 IGF1RP08069 1367 aa16.13■□□□□ 0.17
POLR2J3-201ENST00000379340 PPARGC1BQ86YN6 1023 aaKnown RBP16.12■□□□□ 0.17
POLR2J3-201ENST00000379340 CUL7Q14999 1698 aa16.08■□□□□ 0.16
POLR2J3-201ENST00000379340 CARMIL1Q5VZK9 1371 aa16.07■□□□□ 0.16
POLR2J3-201ENST00000379340 ABCA5Q8WWZ7 1642 aa16.07■□□□□ 0.16
POLR2J3-201ENST00000379340 CEP170Q5SW79 1584 aa16.06■□□□□ 0.16
POLR2J3-201ENST00000379340 APLP2Q06481 763 aa16.05■□□□□ 0.16
POLR2J3-201ENST00000379340 GRIN2AQ12879 1464 aa16.04■□□□□ 0.16
POLR2J3-201ENST00000379340 KIF13AQ9H1H9 1805 aa16.03■□□□□ 0.16
POLR2J3-201ENST00000379340 NUP160Q12769 1436 aa16.01■□□□□ 0.15
POLR2J3-201ENST00000379340 ARHGAP35Q9NRY4 1499 aa16■□□□□ 0.15
POLR2J3-201ENST00000379340 SHROOM2Q13796 1616 aa15.99■□□□□ 0.15
POLR2J3-201ENST00000379340 ADAMTS12P58397 1594 aa15.98■□□□□ 0.15
POLR2J3-201ENST00000379340 CTTNBP2Q8WZ74 1663 aa15.95■□□□□ 0.14
POLR2J3-201ENST00000379340 RANGAP1P46060 587 aaPredicted RBP15.94■□□□□ 0.14
POLR2J3-201ENST00000379340 TTBK1Q5TCY1 1321 aaPredicted RBP15.93■□□□□ 0.14
POLR2J3-201ENST00000379340 EFCAB5A4FU69 1503 aa15.93■□□□□ 0.14
POLR2J3-201ENST00000379340 MAP3K1Q13233 1512 aa15.93■□□□□ 0.14
POLR2J3-201ENST00000379340 KDM4FA0A1W2PPD8 638 aa15.92■□□□□ 0.14
POLR2J3-201ENST00000379340 PRG4Q92954 1404 aaPredicted RBP15.9■□□□□ 0.14
POLR2J3-201ENST00000379340 FHAD1B1AJZ9 1412 aa15.89■□□□□ 0.13
POLR2J3-201ENST00000379340 FAM69CQ0P6D2 419 aa15.89■□□□□ 0.13
POLR2J3-201ENST00000379340 ILDR1Q86SU0 546 aaPredicted RBP15.89■□□□□ 0.13
POLR2J3-201ENST00000379340 ABCC10Q5T3U5 1492 aa15.87■□□□□ 0.13
POLR2J3-201ENST00000379340 CCER1Q8TC90 406 aaPredicted RBP15.86■□□□□ 0.13
POLR2J3-201ENST00000379340 JPH4Q96JJ6 628 aa15.83■□□□□ 0.13
POLR2J3-201ENST00000379340 TIAM1Q13009 1591 aa15.83■□□□□ 0.13
POLR2J3-201ENST00000379340 DIP2BQ9P265 1576 aa15.83■□□□□ 0.13
POLR2J3-201ENST00000379340 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.83■□□□□ 0.12
POLR2J3-201ENST00000379340 CFAP43Q8NDM7 1665 aa15.82■□□□□ 0.12
POLR2J3-201ENST00000379340 RRBP1Q9P2E9 1410 aaKnown RBP15.8■□□□□ 0.12
POLR2J3-201ENST00000379340 MAPKBP1O60336 1514 aa15.8■□□□□ 0.12
POLR2J3-201ENST00000379340 ADCY10Q96PN6 1610 aa15.8■□□□□ 0.12
POLR2J3-201ENST00000379340 KDM6BO15054 1643 aa15.78■□□□□ 0.12
POLR2J3-201ENST00000379340 PCF11O94913 1555 aaKnown RBP15.78■□□□□ 0.12
POLR2J3-201ENST00000379340 SAMD9Q5K651 1589 aa15.78■□□□□ 0.12
POLR2J3-201ENST00000379340 FYCO1Q9BQS8 1478 aa15.78■□□□□ 0.12
POLR2J3-201ENST00000379340 KANK4Q5T7N3 995 aaPredicted RBP15.76■□□□□ 0.11
POLR2J3-201ENST00000379340 TSPOAP1O95153 1857 aa15.76■□□□□ 0.11
POLR2J3-201ENST00000379340 FMN1Q68DA7 1419 aa15.75■□□□□ 0.11
POLR2J3-201ENST00000379340 CASKIN1Q8WXD9 1431 aa15.75■□□□□ 0.11
POLR2J3-201ENST00000379340 NPM1P06748 294 aaKnown RBP eCLIP15.75■□□□□ 0.11
POLR2J3-201ENST00000379340 LRRC9Q6ZRR7 1453 aa15.73■□□□□ 0.11
POLR2J3-201ENST00000379340 FHOD3Q2V2M9 1422 aa15.72■□□□□ 0.11
POLR2J3-201ENST00000379340 HNRNPUL2Q1KMD3 747 aaKnown RBP15.71■□□□□ 0.11
POLR2J3-201ENST00000379340 CCNB3Q8WWL7 1395 aa15.7■□□□□ 0.1
POLR2J3-201ENST00000379340 IQGAP2Q13576 1575 aa15.66■□□□□ 0.1
POLR2J3-201ENST00000379340 ADGRL1O94910 1474 aa15.64■□□□□ 0.09
POLR2J3-201ENST00000379340 P3H3Q8IVL6 736 aa15.63■□□□□ 0.09
POLR2J3-201ENST00000379340 CLSPNQ9HAW4 1339 aa15.63■□□□□ 0.09
POLR2J3-201ENST00000379340 PPRC1Q5VV67 1664 aaKnown RBP15.62■□□□□ 0.09
POLR2J3-201ENST00000379340 KIAA0586Q9BVV6 1533 aa15.61■□□□□ 0.09
POLR2J3-201ENST00000379340 COL17A1Q9UMD9 1497 aaPredicted RBP15.6■□□□□ 0.09
POLR2J3-201ENST00000379340 UGGT2Q9NYU1 1516 aa15.6■□□□□ 0.09
POLR2J3-201ENST00000379340 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.58■□□□□ 0.09
POLR2J3-201ENST00000379340 HECW2Q9P2P5 1572 aa15.58■□□□□ 0.08
POLR2J3-201ENST00000379340 CCDC18Q5T9S5 1454 aa15.58■□□□□ 0.08
POLR2J3-201ENST00000379340 HECW1Q76N89 1606 aa15.57■□□□□ 0.08
POLR2J3-201ENST00000379340 PHLDB1Q86UU1 1377 aa15.57■□□□□ 0.08
POLR2J3-201ENST00000379340 PTPRGP23470 1445 aa15.57■□□□□ 0.08
POLR2J3-201ENST00000379340 ASXL2Q76L83 1435 aa15.57■□□□□ 0.08
POLR2J3-201ENST00000379340 LRRIQ1Q96JM4 1722 aa15.56■□□□□ 0.08
POLR2J3-201ENST00000379340 EHBP1L1Q8N3D4 1523 aa15.55■□□□□ 0.08
POLR2J3-201ENST00000379340 ABCC2Q92887 1545 aa15.54■□□□□ 0.08
POLR2J3-201ENST00000379340 ATP1B4Q9UN42 357 aaPredicted RBP15.53■□□□□ 0.08
POLR2J3-201ENST00000379340 DHX57Q6P158 1386 aaKnown RBP15.53■□□□□ 0.08
POLR2J3-201ENST00000379340 SUPT6HQ7KZ85 1726 aaKnown RBP15.53■□□□□ 0.08
POLR2J3-201ENST00000379340 GLI2P10070 1586 aa15.52■□□□□ 0.08
POLR2J3-201ENST00000379340 MTUS2Q5JR59 1369 aa15.52■□□□□ 0.07
POLR2J3-201ENST00000379340 KIAA0556O60303 1618 aa15.5■□□□□ 0.07
POLR2J3-201ENST00000379340 PLB1Q6P1J6 1458 aa15.5■□□□□ 0.07
POLR2J3-201ENST00000379340 FGD6Q6ZV73 1430 aa15.48■□□□□ 0.07
POLR2J3-201ENST00000379340 SETD5Q9C0A6 1442 aa15.46■□□□□ 0.07
POLR2J3-201ENST00000379340 EPRSP07814 1512 aaKnown RBP15.46■□□□□ 0.07
POLR2J3-201ENST00000379340 NCOA2Q15596 1464 aa15.46■□□□□ 0.07
POLR2J3-201ENST00000379340 MAP3K4Q9Y6R4 1608 aa15.45■□□□□ 0.06
POLR2J3-201ENST00000379340 DISP1Q96F81 1524 aa15.44■□□□□ 0.06
POLR2J3-201ENST00000379340 UHRF1BP1LA0JNW5 1464 aa15.44■□□□□ 0.06
POLR2J3-201ENST00000379340 MYOM3Q5VTT5 1437 aa15.44■□□□□ 0.06
POLR2J3-201ENST00000379340 RAB3GAP2Q9H2M9 1393 aa15.43■□□□□ 0.06
POLR2J3-201ENST00000379340 FAM50AQ14320 339 aaKnown RBP15.43■□□□□ 0.06
POLR2J3-201ENST00000379340 UACAQ9BZF9 1416 aa15.43■□□□□ 0.06
POLR2J3-201ENST00000379340 CARMIL2Q6F5E8 1435 aa15.42■□□□□ 0.06
POLR2J3-201ENST00000379340 ZNF316A6NFI3 1004 aaPredicted RBP15.41■□□□□ 0.06
POLR2J3-201ENST00000379340 ITGAEP38570 1179 aa15.41■□□□□ 0.06
POLR2J3-201ENST00000379340 KDM5BQ9UGL1 1544 aa15.4■□□□□ 0.06
POLR2J3-201ENST00000379340 RAPGEF6Q8TEU7 1601 aa15.4■□□□□ 0.06
POLR2J3-201ENST00000379340 MAGI3Q5TCQ9 1506 aa15.4■□□□□ 0.06
POLR2J3-201ENST00000379340 ZCCHC11Q5TAX3 1644 aaKnown RBP15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms