RNA–Protein interactions for RNA: ENST00000378778.5

PTPRR-203, Transcript of protein tyrosine phosphatase, receptor type R, humanhuman

TSL 1 (best) BASIC

Gene PTPRR, Length 2,632 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRR-203ENST00000378778 HMGXB3Q12766 1538 aa11.63□□□□□ -0.55
PTPRR-203ENST00000378778 ARHGAP35Q9NRY4 1499 aa11.62□□□□□ -0.55
PTPRR-203ENST00000378778 DNAJC5Q9H3Z4 198 aa11.61□□□□□ -0.55
PTPRR-203ENST00000378778 PRDM2Q13029 1718 aa11.61□□□□□ -0.55
PTPRR-203ENST00000378778 BCL11AQ9H165 835 aa11.61□□□□□ -0.55
PTPRR-203ENST00000378778 RAB3GAP2Q9H2M9 1393 aa11.61□□□□□ -0.55
PTPRR-203ENST00000378778 CFAP43Q8NDM7 1665 aa11.61□□□□□ -0.55
PTPRR-203ENST00000378778 ERICH6BQ5W0A0 696 aa11.6□□□□□ -0.55
PTPRR-203ENST00000378778 KANK4Q5T7N3 995 aaPredicted RBP11.59□□□□□ -0.55
PTPRR-203ENST00000378778 SLC4A1APQ9BWU0 796 aaKnown RBP11.59□□□□□ -0.55
PTPRR-203ENST00000378778 PABPN1Q86U42 306 aaKnown RBP eCLIP11.58□□□□□ -0.56
PTPRR-203ENST00000378778 PPP1R15AO75807 674 aaPredicted RBP11.57□□□□□ -0.56
PTPRR-203ENST00000378778 CUX1P39880 1505 aa11.57□□□□□ -0.56
PTPRR-203ENST00000378778 FHAD1B1AJZ9 1412 aa11.56□□□□□ -0.56
PTPRR-203ENST00000378778 FANCIQ9NVI1 1328 aa11.56□□□□□ -0.56
PTPRR-203ENST00000378778 FKBP8Q14318 412 aa11.56□□□□□ -0.56
PTPRR-203ENST00000378778 WDR97A6NE52 1622 aa11.55□□□□□ -0.56
PTPRR-203ENST00000378778 LRRC9Q6ZRR7 1453 aa11.55□□□□□ -0.56
PTPRR-203ENST00000378778 RBM19Q9Y4C8 960 aaKnown RBP11.55□□□□□ -0.56
PTPRR-203ENST00000378778 NCAPD3P42695 1498 aa11.53□□□□□ -0.56
PTPRR-203ENST00000378778 ANP32CO43423 234 aa11.53□□□□□ -0.56
PTPRR-203ENST00000378778 AMER1Q5JTC6 1135 aaPredicted RBP11.52□□□□□ -0.57
PTPRR-203ENST00000378778 AQRO60306 1485 aaKnown RBP eCLIP11.51□□□□□ -0.57
PTPRR-203ENST00000378778 CFTRP13569 1480 aa11.5□□□□□ -0.57
PTPRR-203ENST00000378778 EFCAB5A4FU69 1503 aa11.49□□□□□ -0.57
PTPRR-203ENST00000378778 FYCO1Q9BQS8 1478 aa11.47□□□□□ -0.57
PTPRR-203ENST00000378778 DDX10Q13206 875 aaKnown RBP11.46□□□□□ -0.57
PTPRR-203ENST00000378778 CDK11AQ9UQ88 783 aaPredicted RBP11.44□□□□□ -0.58
PTPRR-203ENST00000378778 KCNH8Q96L42 1107 aa11.44□□□□□ -0.58
PTPRR-203ENST00000378778 PHLDB1Q86UU1 1377 aa11.43□□□□□ -0.58
PTPRR-203ENST00000378778 IGF1RP08069 1367 aa11.42□□□□□ -0.58
PTPRR-203ENST00000378778 CASKIN1Q8WXD9 1431 aa11.42□□□□□ -0.58
PTPRR-203ENST00000378778 UACAQ9BZF9 1416 aa11.42□□□□□ -0.58
PTPRR-203ENST00000378778 PCF11O94913 1555 aaKnown RBP11.41□□□□□ -0.58
PTPRR-203ENST00000378778 FGD5Q6ZNL6 1462 aa11.41□□□□□ -0.58
PTPRR-203ENST00000378778 RANGAP1P46060 587 aaPredicted RBP11.41□□□□□ -0.58
PTPRR-203ENST00000378778 BCANQ96GW7 911 aa11.41□□□□□ -0.58
PTPRR-203ENST00000378778 TONSLQ96HA7 1378 aa11.4□□□□□ -0.58
PTPRR-203ENST00000378778 HFM1A2PYH4 1435 aa11.39□□□□□ -0.59
PTPRR-203ENST00000378778 CARMIL1Q5VZK9 1371 aa11.39□□□□□ -0.59
PTPRR-203ENST00000378778 THOC2Q8NI27 1593 aaKnown RBP11.39□□□□□ -0.59
PTPRR-203ENST00000378778 CC2D2AQ9P2K1 1620 aa11.39□□□□□ -0.59
PTPRR-203ENST00000378778 ERICH6Q7L0X2 663 aa11.39□□□□□ -0.59
PTPRR-203ENST00000378778 CUL7Q14999 1698 aa11.37□□□□□ -0.59
PTPRR-203ENST00000378778 PPP4R2Q9NY27 417 aa11.37□□□□□ -0.59
PTPRR-203ENST00000378778 PTPN23Q9H3S7 1636 aa11.37□□□□□ -0.59
PTPRR-203ENST00000378778 PRKCSHP14314 528 aaPredicted RBP11.37□□□□□ -0.59
PTPRR-203ENST00000378778 NCOA2Q15596 1464 aa11.37□□□□□ -0.59
PTPRR-203ENST00000378778 CCDC18Q5T9S5 1454 aa11.37□□□□□ -0.59
PTPRR-203ENST00000378778 FGD6Q6ZV73 1430 aa11.36□□□□□ -0.59
PTPRR-203ENST00000378778 CTTNBP2Q8WZ74 1663 aa11.35□□□□□ -0.59
PTPRR-203ENST00000378778 FMN1Q68DA7 1419 aa11.35□□□□□ -0.59
PTPRR-203ENST00000378778 ITGAEP38570 1179 aa11.35□□□□□ -0.59
PTPRR-203ENST00000378778 SIN3AQ96ST3 1273 aa11.35□□□□□ -0.59
PTPRR-203ENST00000378778 ZBTB22O15209 634 aa11.35□□□□□ -0.59
PTPRR-203ENST00000378778 KIF21AQ7Z4S6 1674 aa11.34□□□□□ -0.59
PTPRR-203ENST00000378778 AKNAQ7Z591 1439 aa11.34□□□□□ -0.59
PTPRR-203ENST00000378778 MSH5O43196 834 aa11.34□□□□□ -0.59
PTPRR-203ENST00000378778 HECW1Q76N89 1606 aa11.33□□□□□ -0.6
PTPRR-203ENST00000378778 POLR1AO95602 1720 aaPredicted RBP11.33□□□□□ -0.6
PTPRR-203ENST00000378778 FAM50AQ14320 339 aaKnown RBP11.32□□□□□ -0.6
PTPRR-203ENST00000378778 TRIM52Q96A61 297 aa11.32□□□□□ -0.6
PTPRR-203ENST00000378778 KDM5BQ9UGL1 1544 aa11.32□□□□□ -0.6
PTPRR-203ENST00000378778 GCC2Q8IWJ2 1684 aa11.32□□□□□ -0.6
PTPRR-203ENST00000378778 ABCA5Q8WWZ7 1642 aa11.31□□□□□ -0.6
PTPRR-203ENST00000378778 CNTLNQ9NXG0 1405 aa11.3□□□□□ -0.6
PTPRR-203ENST00000378778 SUPT6HQ7KZ85 1726 aaKnown RBP11.29□□□□□ -0.6
PTPRR-203ENST00000378778 EHBP1L1Q8N3D4 1523 aa11.29□□□□□ -0.6
PTPRR-203ENST00000378778 NAIPQ13075 1403 aa11.28□□□□□ -0.6
PTPRR-203ENST00000378778 ABCA10Q8WWZ4 1543 aa11.28□□□□□ -0.6
PTPRR-203ENST00000378778 HNRNPUQ00839 825 aaKnown RBP eCLIP11.27□□□□□ -0.6
PTPRR-203ENST00000378778 ZBED9Q6R2W3 1325 aa11.27□□□□□ -0.6
PTPRR-203ENST00000378778 SNAPC4Q5SXM2 1469 aa11.27□□□□□ -0.61
PTPRR-203ENST00000378778 MYOM3Q5VTT5 1437 aa11.27□□□□□ -0.61
PTPRR-203ENST00000378778 PPP6R1Q9UPN7 881 aa11.27□□□□□ -0.61
PTPRR-203ENST00000378778 SAMD9Q5K651 1589 aa11.27□□□□□ -0.61
PTPRR-203ENST00000378778 CADPSQ9ULU8 1353 aa11.26□□□□□ -0.61
PTPRR-203ENST00000378778 TCOF1Q13428 1488 aaKnown RBP11.26□□□□□ -0.61
PTPRR-203ENST00000378778 ARHGEF11O15085 1522 aa11.25□□□□□ -0.61
PTPRR-203ENST00000378778 DNMBPQ6XZF7 1577 aa11.25□□□□□ -0.61
PTPRR-203ENST00000378778 NCBP3Q53F19 620 aaKnown RBP11.25□□□□□ -0.61
PTPRR-203ENST00000378778 NCOA1Q15788 1441 aa11.23□□□□□ -0.61
PTPRR-203ENST00000378778 EIF4G2P78344 907 aaKnown RBP eCLIP11.22□□□□□ -0.61
PTPRR-203ENST00000378778 UGGT2Q9NYU1 1516 aa11.22□□□□□ -0.61
PTPRR-203ENST00000378778 FHOD3Q2V2M9 1422 aa11.22□□□□□ -0.61
PTPRR-203ENST00000378778 MTUS2Q5JR59 1369 aa11.21□□□□□ -0.61
PTPRR-203ENST00000378778 GRIN2BQ13224 1484 aa11.21□□□□□ -0.61
PTPRR-203ENST00000378778 SMG6Q86US8 1419 aaKnown RBP11.21□□□□□ -0.62
PTPRR-203ENST00000378778 WASHC2AQ641Q2 1341 aa11.2□□□□□ -0.62
PTPRR-203ENST00000378778 NOP58Q9Y2X3 529 aaKnown RBP11.2□□□□□ -0.62
PTPRR-203ENST00000378778 PTPRKQ15262 1439 aa11.19□□□□□ -0.62
PTPRR-203ENST00000378778 MIA2Q96PC5 1412 aa11.19□□□□□ -0.62
PTPRR-203ENST00000378778 DEKP35659 375 aaKnown RBP11.19□□□□□ -0.62
PTPRR-203ENST00000378778 RNF123Q5XPI4 1314 aa11.18□□□□□ -0.62
PTPRR-203ENST00000378778 CCDC7Q96M83 1385 aa11.18□□□□□ -0.62
PTPRR-203ENST00000378778 HSPA5P11021 654 aaKnown RBP11.18□□□□□ -0.62
PTPRR-203ENST00000378778 PRKRIP1Q9H875 184 aaPredicted RBP11.18□□□□□ -0.62
PTPRR-203ENST00000378778 LRRIQ1Q96JM4 1722 aa11.18□□□□□ -0.62
PTPRR-203ENST00000378778 ARID4BQ4LE39 1312 aaPredicted RBP11.17□□□□□ -0.62
PTPRR-203ENST00000378778 SENP3Q9H4L4 574 aaPredicted RBP11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms