RNA–Protein interactions for RNA: ENST00000378037.9

CKAP2-203, Transcript of cytoskeleton associated protein 2, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CKAP2, Length 3,629 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP2-203ENST00000378037 SENP3Q9H4L4 574 aaPredicted RBP11.94□□□□□ -0.5
CKAP2-203ENST00000378037 ERCC6Q03468 1493 aa11.93□□□□□ -0.5
CKAP2-203ENST00000378037 ZNF326Q5BKZ1 582 aaKnown RBP11.92□□□□□ -0.5
CKAP2-203ENST00000378037 CLIP1P30622 1438 aa11.92□□□□□ -0.5
CKAP2-203ENST00000378037 CHD1O14646 1710 aa11.92□□□□□ -0.5
CKAP2-203ENST00000378037 ADAMTS12P58397 1594 aa11.91□□□□□ -0.5
CKAP2-203ENST00000378037 DIEXFQ68CQ4 756 aaKnown RBP11.91□□□□□ -0.5
CKAP2-203ENST00000378037 TDRD9Q8NDG6 1382 aaKnown RBP11.91□□□□□ -0.5
CKAP2-203ENST00000378037 KANK4Q5T7N3 995 aaPredicted RBP11.91□□□□□ -0.5
CKAP2-203ENST00000378037 MAGI1Q96QZ7 1491 aaPredicted RBP11.91□□□□□ -0.5
CKAP2-203ENST00000378037 POLA1P09884 1462 aaPredicted RBP11.91□□□□□ -0.5
CKAP2-203ENST00000378037 SYNJ1O43426 1573 aa11.89□□□□□ -0.51
CKAP2-203ENST00000378037 SENP3-EIF4A1A0A087X0R7 540 aa11.86□□□□□ -0.51
CKAP2-203ENST00000378037 CHMP7Q8WUX9 453 aaPredicted RBP11.81□□□□□ -0.52
CKAP2-203ENST00000378037 RRP7BPQ9NSQ0 103 aa11.81□□□□□ -0.52
CKAP2-203ENST00000378037 RAPGEF2Q9Y4G8 1499 aa11.8□□□□□ -0.52
CKAP2-203ENST00000378037 FGD5Q6ZNL6 1462 aa11.79□□□□□ -0.52
CKAP2-203ENST00000378037 GOLGA3Q08378 1498 aa11.77□□□□□ -0.52
CKAP2-203ENST00000378037 KCNH8Q96L42 1107 aa11.77□□□□□ -0.53
CKAP2-203ENST00000378037 PLPPR3Q6T4P5 718 aa11.75□□□□□ -0.53
CKAP2-203ENST00000378037 SIN3AQ96ST3 1273 aa11.75□□□□□ -0.53
CKAP2-203ENST00000378037 NUP160Q12769 1436 aa11.75□□□□□ -0.53
CKAP2-203ENST00000378037 GRIN2BQ13224 1484 aa11.74□□□□□ -0.53
CKAP2-203ENST00000378037 TNIKQ9UKE5 1360 aa11.74□□□□□ -0.53
CKAP2-203ENST00000378037 KIF27Q86VH2 1401 aa11.74□□□□□ -0.53
CKAP2-203ENST00000378037 SYNJ2O15056 1496 aa11.73□□□□□ -0.53
CKAP2-203ENST00000378037 CTTNBP2Q8WZ74 1663 aa11.73□□□□□ -0.53
CKAP2-203ENST00000378037 CARMIL1Q5VZK9 1371 aa11.72□□□□□ -0.53
CKAP2-203ENST00000378037 RAD54L2Q9Y4B4 1467 aa11.71□□□□□ -0.53
CKAP2-203ENST00000378037 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.7□□□□□ -0.543e-7■■■■■ 27.3
CKAP2-203ENST00000378037 FOXD1Q16676 465 aa11.69□□□□□ -0.54
CKAP2-203ENST00000378037 CENPBP07199 599 aaPredicted RBP11.69□□□□□ -0.54
CKAP2-203ENST00000378037 BCANQ96GW7 911 aa11.69□□□□□ -0.54
CKAP2-203ENST00000378037 RIMBP3CA6NJZ7 1639 aa11.68□□□□□ -0.54
CKAP2-203ENST00000378037 RIMBP3BA6NNM3 1639 aa11.68□□□□□ -0.54
CKAP2-203ENST00000378037 RIMBP3Q9UFD9 1639 aa11.68□□□□□ -0.54
CKAP2-203ENST00000378037 MTUS2Q5JR59 1369 aa11.68□□□□□ -0.54
CKAP2-203ENST00000378037 ZNF316A6NFI3 1004 aaPredicted RBP11.67□□□□□ -0.54
CKAP2-203ENST00000378037 DDX10Q13206 875 aaKnown RBP11.67□□□□□ -0.54
CKAP2-203ENST00000378037 ZNF608Q9ULD9 1512 aaPredicted RBP11.67□□□□□ -0.54
CKAP2-203ENST00000378037 CEP170Q5SW79 1584 aa11.67□□□□□ -0.54
CKAP2-203ENST00000378037 MIER1Q8N108 512 aa11.65□□□□□ -0.55
CKAP2-203ENST00000378037 FHOD3Q2V2M9 1422 aa11.64□□□□□ -0.55
CKAP2-203ENST00000378037 KIF21BO75037 1637 aa11.62□□□□□ -0.55
CKAP2-203ENST00000378037 KDM2AQ9Y2K7 1162 aa11.62□□□□□ -0.55
CKAP2-203ENST00000378037 GTF3C3Q9Y5Q9 886 aa11.62□□□□□ -0.55
CKAP2-203ENST00000378037 SLC4A1APQ9BWU0 796 aaKnown RBP11.62□□□□□ -0.55
CKAP2-203ENST00000378037 GAPVD1Q14C86 1478 aa11.61□□□□□ -0.55
CKAP2-203ENST00000378037 FHAD1B1AJZ9 1412 aa11.61□□□□□ -0.55
CKAP2-203ENST00000378037 GRIN2AQ12879 1464 aa11.6□□□□□ -0.55
CKAP2-203ENST00000378037 UGGT2Q9NYU1 1516 aa11.59□□□□□ -0.55
CKAP2-203ENST00000378037 SAMD9Q5K651 1589 aa11.59□□□□□ -0.55
CKAP2-203ENST00000378037 SNAPC4Q5SXM2 1469 aa11.57□□□□□ -0.56
CKAP2-203ENST00000378037 EEA1Q15075 1411 aa11.57□□□□□ -0.56
CKAP2-203ENST00000378037 AQRO60306 1485 aaKnown RBP eCLIP11.57□□□□□ -0.561e-9■■■■■ 29.8
CKAP2-203ENST00000378037 DNAJC5Q9H3Z4 198 aa11.56□□□□□ -0.56
CKAP2-203ENST00000378037 RGL3Q3MIN7 710 aa11.56□□□□□ -0.56
CKAP2-203ENST00000378037 IGF1RP08069 1367 aa11.55□□□□□ -0.56
CKAP2-203ENST00000378037 VPS8Q8N3P4 1428 aa11.54□□□□□ -0.56
CKAP2-203ENST00000378037 SALL2Q9Y467 1007 aaPredicted RBP11.54□□□□□ -0.56
CKAP2-203ENST00000378037 UHRF1BP1LA0JNW5 1464 aa11.54□□□□□ -0.56
CKAP2-203ENST00000378037 CHGAP10645 457 aaKnown RBP11.53□□□□□ -0.56
CKAP2-203ENST00000378037 SCAF1Q9H7N4 1312 aaKnown RBP11.52□□□□□ -0.56
CKAP2-203ENST00000378037 ARHGEF11O15085 1522 aa11.52□□□□□ -0.57
CKAP2-203ENST00000378037 MAPKBP1O60336 1514 aa11.52□□□□□ -0.57
CKAP2-203ENST00000378037 PRXQ9BXM0 1461 aa11.51□□□□□ -0.57
CKAP2-203ENST00000378037 GLI2P10070 1586 aa11.51□□□□□ -0.57
CKAP2-203ENST00000378037 CFDP1Q9UEE9 299 aaPredicted RBP11.49□□□□□ -0.57
CKAP2-203ENST00000378037 ZNF644Q9H582 1327 aaPredicted RBP11.49□□□□□ -0.57
CKAP2-203ENST00000378037 CDK11AQ9UQ88 783 aaPredicted RBP11.48□□□□□ -0.57
CKAP2-203ENST00000378037 KIAA0586Q9BVV6 1533 aa11.48□□□□□ -0.57
CKAP2-203ENST00000378037 CCNB3Q8WWL7 1395 aa11.48□□□□□ -0.57
CKAP2-203ENST00000378037 TONSLQ96HA7 1378 aa11.47□□□□□ -0.57
CKAP2-203ENST00000378037 KDM5BQ9UGL1 1544 aa11.47□□□□□ -0.57
CKAP2-203ENST00000378037 KIF13AQ9H1H9 1805 aa11.46□□□□□ -0.57
CKAP2-203ENST00000378037 PLEKHD1A6NEE1 506 aa11.45□□□□□ -0.58
CKAP2-203ENST00000378037 IQGAP2Q13576 1575 aa11.45□□□□□ -0.58
CKAP2-203ENST00000378037 IRX6P78412 446 aaPredicted RBP11.45□□□□□ -0.58
CKAP2-203ENST00000378037 ARAP1Q96P48 1450 aa11.44□□□□□ -0.58
CKAP2-203ENST00000378037 KIAA0556O60303 1618 aa11.44□□□□□ -0.58
CKAP2-203ENST00000378037 FAM9BQ8IZU0 186 aa11.42□□□□□ -0.58
CKAP2-203ENST00000378037 PLEKHG5O94827 1062 aa11.42□□□□□ -0.58
CKAP2-203ENST00000378037 EFCAB5A4FU69 1503 aa11.42□□□□□ -0.58
CKAP2-203ENST00000378037 JPH4Q96JJ6 628 aa11.42□□□□□ -0.58
CKAP2-203ENST00000378037 TSPY4P0CV99 314 aa11.41□□□□□ -0.58
CKAP2-203ENST00000378037 TSPY10P0CW01 314 aa11.41□□□□□ -0.58
CKAP2-203ENST00000378037 RAB3GAP2Q9H2M9 1393 aa11.41□□□□□ -0.58
CKAP2-203ENST00000378037 PELP1Q8IZL8 1130 aaKnown RBP11.41□□□□□ -0.58
CKAP2-203ENST00000378037 ACIN1Q9UKV3 1341 aaKnown RBP11.41□□□□□ -0.58
CKAP2-203ENST00000378037 ABCA8O94911 1581 aa11.4□□□□□ -0.58
CKAP2-203ENST00000378037 HNRNPMP52272 730 aaKnown RBP eCLIP11.4□□□□□ -0.58
CKAP2-203ENST00000378037 ADCY10Q96PN6 1610 aa11.39□□□□□ -0.59
CKAP2-203ENST00000378037 PPRC1Q5VV67 1664 aaKnown RBP11.39□□□□□ -0.59
CKAP2-203ENST00000378037 MAP3K4Q9Y6R4 1608 aa11.39□□□□□ -0.59
CKAP2-203ENST00000378037 ANP32CO43423 234 aa11.39□□□□□ -0.59
CKAP2-203ENST00000378037 BCL11AQ9H165 835 aa11.39□□□□□ -0.59
CKAP2-203ENST00000378037 PHLDB1Q86UU1 1377 aa11.37□□□□□ -0.59
CKAP2-203ENST00000378037 NEFLP07196 543 aa11.36□□□□□ -0.59
CKAP2-203ENST00000378037 DISP1Q96F81 1524 aa11.36□□□□□ -0.59
CKAP2-203ENST00000378037 MLECQ14165 292 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms