RNA–Protein interactions for RNA: ENST00000378034.7

CKAP2-202, Transcript of cytoskeleton associated protein 2, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CKAP2, Length 1,972 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP2-202ENST00000378034 RIMBP3BA6NNM3 1639 aa22.01■■□□□ 1.11
CKAP2-202ENST00000378034 RIMBP3Q9UFD9 1639 aa22.01■■□□□ 1.11
CKAP2-202ENST00000378034 SHROOM2Q13796 1616 aa22■■□□□ 1.11
CKAP2-202ENST00000378034 FAM9AQ8IZU1 332 aaPredicted RBP21.96■■□□□ 1.11
CKAP2-202ENST00000378034 JPH4Q96JJ6 628 aa21.94■■□□□ 1.1
CKAP2-202ENST00000378034 IQGAP2Q13576 1575 aa21.91■■□□□ 1.1
CKAP2-202ENST00000378034 KIF21BO75037 1637 aa21.91■■□□□ 1.1
CKAP2-202ENST00000378034 CTTNBP2Q8WZ74 1663 aa21.89■■□□□ 1.09
CKAP2-202ENST00000378034 PRG4Q92954 1404 aaPredicted RBP21.87■■□□□ 1.09
CKAP2-202ENST00000378034 ARAP1Q96P48 1450 aa21.85■■□□□ 1.09
CKAP2-202ENST00000378034 ERCC6L2Q5T890 1561 aa21.83■■□□□ 1.09
CKAP2-202ENST00000378034 UGGT2Q9NYU1 1516 aa21.81■■□□□ 1.08
CKAP2-202ENST00000378034 CYB5RLQ6IPT4 315 aa21.79■■□□□ 1.08
CKAP2-202ENST00000378034 CARMIL2Q6F5E8 1435 aa21.78■■□□□ 1.08
CKAP2-202ENST00000378034 GOLGA3Q08378 1498 aa21.77■■□□□ 1.08
CKAP2-202ENST00000378034 DISP1Q96F81 1524 aa21.72■■□□□ 1.07
CKAP2-202ENST00000378034 KIAA0556O60303 1618 aa21.69■■□□□ 1.06
CKAP2-202ENST00000378034 TNIKQ9UKE5 1360 aa21.69■■□□□ 1.06
CKAP2-202ENST00000378034 UBTFP17480 764 aaKnown RBP21.68■■□□□ 1.06
CKAP2-202ENST00000378034 PTPRGP23470 1445 aa21.64■■□□□ 1.06
CKAP2-202ENST00000378034 EHMT2Q96KQ7 1210 aa21.62■■□□□ 1.05
CKAP2-202ENST00000378034 SAMD9Q5K651 1589 aa21.61■■□□□ 1.05
CKAP2-202ENST00000378034 EFCAB5A4FU69 1503 aa21.57■■□□□ 1.04
CKAP2-202ENST00000378034 TTBK1Q5TCY1 1321 aaPredicted RBP21.52■■□□□ 1.04
CKAP2-202ENST00000378034 ADCY10Q96PN6 1610 aa21.52■■□□□ 1.04
CKAP2-202ENST00000378034 UACAQ9BZF9 1416 aa21.52■■□□□ 1.03
CKAP2-202ENST00000378034 UHRF1BP1LA0JNW5 1464 aa21.51■■□□□ 1.03
CKAP2-202ENST00000378034 RANGAP1P46060 587 aaPredicted RBP21.51■■□□□ 1.03
CKAP2-202ENST00000378034 P3H3Q8IVL6 736 aa21.5■■□□□ 1.03
CKAP2-202ENST00000378034 ABCC2Q92887 1545 aa21.48■■□□□ 1.03
CKAP2-202ENST00000378034 NPM1P06748 294 aaKnown RBP eCLIP21.47■■□□□ 1.03
CKAP2-202ENST00000378034 ABCA8O94911 1581 aa21.45■■□□□ 1.02
CKAP2-202ENST00000378034 FHOD3Q2V2M9 1422 aa21.45■■□□□ 1.02
CKAP2-202ENST00000378034 ARHGAP35Q9NRY4 1499 aa21.44■■□□□ 1.02
CKAP2-202ENST00000378034 PLB1Q6P1J6 1458 aa21.43■■□□□ 1.02
CKAP2-202ENST00000378034 KDM5BQ9UGL1 1544 aa21.39■■□□□ 1.01
CKAP2-202ENST00000378034 MAPKBP1O60336 1514 aa21.38■■□□□ 1.01
CKAP2-202ENST00000378034 LOC105371045A0A1W2PR82 267 aa21.38■■□□□ 1.01
CKAP2-202ENST00000378034 CLIP1P30622 1438 aa21.38■■□□□ 1.01
CKAP2-202ENST00000378034 RAPGEF6Q8TEU7 1601 aa21.37■■□□□ 1.01
CKAP2-202ENST00000378034 FMN1Q68DA7 1419 aa21.37■■□□□ 1.01
CKAP2-202ENST00000378034 ZCCHC11Q5TAX3 1644 aaKnown RBP21.33■■□□□ 1.01
CKAP2-202ENST00000378034 CEP162Q5TB80 1403 aa21.31■■□□□ 1
CKAP2-202ENST00000378034 TRHP20396 242 aaPredicted RBP21.28■■□□□ 1
CKAP2-202ENST00000378034 NUP153P49790 1475 aaKnown RBP21.27■■□□□ 1
CKAP2-202ENST00000378034 ASXL2Q76L83 1435 aa21.27■■□□□ 1
CKAP2-202ENST00000378034 ATP10BO94823 1461 aa21.26■□□□□ 0.99
CKAP2-202ENST00000378034 ABCC10Q5T3U5 1492 aa21.25■□□□□ 0.99
CKAP2-202ENST00000378034 HECW1Q76N89 1606 aa21.23■□□□□ 0.99
CKAP2-202ENST00000378034 DIP2BQ9P265 1576 aa21.21■□□□□ 0.99
CKAP2-202ENST00000378034 KIF13AQ9H1H9 1805 aa21.21■□□□□ 0.99
CKAP2-202ENST00000378034 CASKIN1Q8WXD9 1431 aa21.2■□□□□ 0.98
CKAP2-202ENST00000378034 WDR7Q9Y4E6 1490 aa21.2■□□□□ 0.98
CKAP2-202ENST00000378034 ARID3CA6NKF2 412 aa21.17■□□□□ 0.98
CKAP2-202ENST00000378034 FAM69CQ0P6D2 419 aa21.17■□□□□ 0.98
CKAP2-202ENST00000378034 FYCO1Q9BQS8 1478 aa21.17■□□□□ 0.98
CKAP2-202ENST00000378034 PCF11O94913 1555 aaKnown RBP21.17■□□□□ 0.98
CKAP2-202ENST00000378034 GLI2P10070 1586 aa21.17■□□□□ 0.98
CKAP2-202ENST00000378034 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.16■□□□□ 0.98
CKAP2-202ENST00000378034 HNRNPUL2Q1KMD3 747 aaKnown RBP21.16■□□□□ 0.98
CKAP2-202ENST00000378034 EPRSP07814 1512 aaKnown RBP21.16■□□□□ 0.98
CKAP2-202ENST00000378034 ATP1B4Q9UN42 357 aaPredicted RBP21.15■□□□□ 0.98
CKAP2-202ENST00000378034 CCDC18Q5T9S5 1454 aa21.12■□□□□ 0.97
CKAP2-202ENST00000378034 CDK13Q14004 1512 aaKnown RBP21.11■□□□□ 0.97
CKAP2-202ENST00000378034 PLEKHD1A6NEE1 506 aa21.11■□□□□ 0.97
CKAP2-202ENST00000378034 LRRIQ1Q96JM4 1722 aa21.1■□□□□ 0.97
CKAP2-202ENST00000378034 CDK11AQ9UQ88 783 aaPredicted RBP21.09■□□□□ 0.97
CKAP2-202ENST00000378034 KCNH8Q96L42 1107 aa21.07■□□□□ 0.96
CKAP2-202ENST00000378034 VPS8Q8N3P4 1428 aa21.07■□□□□ 0.96
CKAP2-202ENST00000378034 MAP3K4Q9Y6R4 1608 aa21.05■□□□□ 0.96
CKAP2-202ENST00000378034 CFAP43Q8NDM7 1665 aa21.04■□□□□ 0.96
CKAP2-202ENST00000378034 ABCA9Q8IUA7 1624 aa21.02■□□□□ 0.95
CKAP2-202ENST00000378034 TSPOAP1O95153 1857 aa21■□□□□ 0.95
CKAP2-202ENST00000378034 TROQ12816 1431 aaPredicted RBP21■□□□□ 0.95
CKAP2-202ENST00000378034 CD109Q6YHK3 1445 aa20.98■□□□□ 0.95
CKAP2-202ENST00000378034 PPRC1Q5VV67 1664 aaKnown RBP20.97■□□□□ 0.95
CKAP2-202ENST00000378034 TEX14Q8IWB6 1497 aa20.97■□□□□ 0.95
CKAP2-202ENST00000378034 MAGI3Q5TCQ9 1506 aa20.96■□□□□ 0.95
CKAP2-202ENST00000378034 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.94■□□□□ 0.94
CKAP2-202ENST00000378034 KIF14Q15058 1648 aa20.94■□□□□ 0.94
CKAP2-202ENST00000378034 MAP3K1Q13233 1512 aa20.91■□□□□ 0.94
CKAP2-202ENST00000378034 TIAM1Q13009 1591 aa20.9■□□□□ 0.94
CKAP2-202ENST00000378034 TTC37Q6PGP7 1564 aa20.89■□□□□ 0.94
CKAP2-202ENST00000378034 MTUS2Q5JR59 1369 aa20.88■□□□□ 0.93
CKAP2-202ENST00000378034 EHBP1L1Q8N3D4 1523 aa20.87■□□□□ 0.93
CKAP2-202ENST00000378034 PHLDB1Q86UU1 1377 aa20.86■□□□□ 0.93
CKAP2-202ENST00000378034 MYO5CQ9NQX4 1742 aa20.84■□□□□ 0.93
CKAP2-202ENST00000378034 ARAP3Q8WWN8 1544 aa20.84■□□□□ 0.93
CKAP2-202ENST00000378034 NEO1Q92859 1461 aa20.84■□□□□ 0.93
CKAP2-202ENST00000378034 PLCH2O75038 1416 aa20.83■□□□□ 0.93
CKAP2-202ENST00000378034 APLP2Q06481 763 aa20.83■□□□□ 0.93
CKAP2-202ENST00000378034 KDM6BO15054 1643 aa20.83■□□□□ 0.92
CKAP2-202ENST00000378034 CFAP74Q9C0B2 1584 aa20.83■□□□□ 0.92
CKAP2-202ENST00000378034 LRRC9Q6ZRR7 1453 aa20.8■□□□□ 0.92
CKAP2-202ENST00000378034 FANCAO15360 1455 aa20.79■□□□□ 0.92
CKAP2-202ENST00000378034 SUPT6HQ7KZ85 1726 aaKnown RBP20.78■□□□□ 0.92
CKAP2-202ENST00000378034 PREX2Q70Z35 1606 aa20.77■□□□□ 0.92
CKAP2-202ENST00000378034 EFCAB2Q5VUJ9 269 aa20.76■□□□□ 0.91
CKAP2-202ENST00000378034 CDC42BPAQ5VT25 1732 aa20.75■□□□□ 0.91
CKAP2-202ENST00000378034 AKNAQ7Z591 1439 aa20.75■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms