RNA–Protein interactions for RNA: ENST00000377270.7

FXN-201, Transcript of frataxin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene FXN, Length 2,608 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FXN-201ENST00000377270 CCDC136Q96JN2 1154 aa22.48■■□□□ 1.19
FXN-201ENST00000377270 CARMIL1Q5VZK9 1371 aa22.46■■□□□ 1.19
FXN-201ENST00000377270 NESP48681 1621 aa22.45■■□□□ 1.18
FXN-201ENST00000377270 ARHGAP35Q9NRY4 1499 aa22.44■■□□□ 1.18
FXN-201ENST00000377270 KANK4Q5T7N3 995 aaPredicted RBP22.43■■□□□ 1.18
FXN-201ENST00000377270 MIER1Q8N108 512 aa22.42■■□□□ 1.18
FXN-201ENST00000377270 DNMBPQ6XZF7 1577 aa22.39■■□□□ 1.17
FXN-201ENST00000377270 RAD54L2Q9Y4B4 1467 aa22.37■■□□□ 1.17
FXN-201ENST00000377270 TOPBP1Q92547 1522 aa22.36■■□□□ 1.17
FXN-201ENST00000377270 POLA1P09884 1462 aaPredicted RBP22.33■■□□□ 1.17
FXN-201ENST00000377270 CLSPNQ9HAW4 1339 aa22.33■■□□□ 1.17
FXN-201ENST00000377270 ABCA10Q8WWZ4 1543 aa22.3■■□□□ 1.16
FXN-201ENST00000377270 LAMC3Q9Y6N6 1575 aa22.28■■□□□ 1.16
FXN-201ENST00000377270 PKNOX2Q96KN3 472 aa22.27■■□□□ 1.16
FXN-201ENST00000377270 DNAJC5BQ9UF47 199 aa22.26■■□□□ 1.15
FXN-201ENST00000377270 URB2Q14146 1524 aaKnown RBP22.22■■□□□ 1.15
FXN-201ENST00000377270 RRBP1Q9P2E9 1410 aaKnown RBP22.21■■□□□ 1.15
FXN-201ENST00000377270 P3H3Q8IVL6 736 aa22.21■■□□□ 1.15
FXN-201ENST00000377270 DEKP35659 375 aaKnown RBP22.19■■□□□ 1.14
FXN-201ENST00000377270 ERICH6BQ5W0A0 696 aa22.19■■□□□ 1.14
FXN-201ENST00000377270 PDS5BQ9NTI5 1447 aa22.18■■□□□ 1.14
FXN-201ENST00000377270 PODXL2Q9NZ53 605 aa22.17■■□□□ 1.14
FXN-201ENST00000377270 CCNB3Q8WWL7 1395 aa22.15■■□□□ 1.14
FXN-201ENST00000377270 TIAM1Q13009 1591 aa22.14■■□□□ 1.13
FXN-201ENST00000377270 MSH5O43196 834 aa22.14■■□□□ 1.13
FXN-201ENST00000377270 RBM19Q9Y4C8 960 aaKnown RBP22.14■■□□□ 1.13
FXN-201ENST00000377270 CUL7Q14999 1698 aa22.13■■□□□ 1.13
FXN-201ENST00000377270 FHAD1B1AJZ9 1412 aa22.13■■□□□ 1.13
FXN-201ENST00000377270 MAP3K1Q13233 1512 aa22.13■■□□□ 1.13
FXN-201ENST00000377270 TDRD9Q8NDG6 1382 aaKnown RBP22.12■■□□□ 1.13
FXN-201ENST00000377270 ZBTB4Q9P1Z0 1013 aaPredicted RBP22.12■■□□□ 1.13
FXN-201ENST00000377270 ATP1B4Q9UN42 357 aaPredicted RBP22.11■■□□□ 1.13
FXN-201ENST00000377270 ITGAEP38570 1179 aa22.1■■□□□ 1.13
FXN-201ENST00000377270 MYT1LQ9UL68 1186 aa22.1■■□□□ 1.13
FXN-201ENST00000377270 DHX57Q6P158 1386 aaKnown RBP22.08■■□□□ 1.13
FXN-201ENST00000377270 WDR97A6NE52 1622 aa22.08■■□□□ 1.13
FXN-201ENST00000377270 FHOD3Q2V2M9 1422 aa22.08■■□□□ 1.12
FXN-201ENST00000377270 LRRC9Q6ZRR7 1453 aa22.07■■□□□ 1.12
FXN-201ENST00000377270 KIF21AQ7Z4S6 1674 aa22.04■■□□□ 1.12
FXN-201ENST00000377270 PCF11O94913 1555 aaKnown RBP22.04■■□□□ 1.12
FXN-201ENST00000377270 GAPVD1Q14C86 1478 aa22.04■■□□□ 1.12
FXN-201ENST00000377270 EFCAB5A4FU69 1503 aa22.03■■□□□ 1.12
FXN-201ENST00000377270 ABCA5Q8WWZ7 1642 aa22.02■■□□□ 1.12
FXN-201ENST00000377270 CTTNBP2Q8WZ74 1663 aa22.02■■□□□ 1.12
FXN-201ENST00000377270 PHLDB1Q86UU1 1377 aa21.99■■□□□ 1.11
FXN-201ENST00000377270 CFAP43Q8NDM7 1665 aa21.97■■□□□ 1.11
FXN-201ENST00000377270 CASKIN1Q8WXD9 1431 aa21.96■■□□□ 1.11
FXN-201ENST00000377270 FYCO1Q9BQS8 1478 aa21.96■■□□□ 1.11
FXN-201ENST00000377270 FAM50AQ14320 339 aaKnown RBP21.94■■□□□ 1.1
FXN-201ENST00000377270 AQRO60306 1485 aaKnown RBP eCLIP21.93■■□□□ 1.1
FXN-201ENST00000377270 FMN1Q68DA7 1419 aa21.92■■□□□ 1.1
FXN-201ENST00000377270 TARBP1Q13395 1621 aaKnown RBP21.91■■□□□ 1.1
FXN-201ENST00000377270 RAB3GAP2Q9H2M9 1393 aa21.9■■□□□ 1.1
FXN-201ENST00000377270 BCANQ96GW7 911 aa21.85■■□□□ 1.09
FXN-201ENST00000377270 SETD5Q9C0A6 1442 aa21.84■■□□□ 1.09
FXN-201ENST00000377270 SNAPC4Q5SXM2 1469 aa21.84■■□□□ 1.09
FXN-201ENST00000377270 SAMD9Q5K651 1589 aa21.84■■□□□ 1.09
FXN-201ENST00000377270 MRC2Q9UBG0 1479 aa21.83■■□□□ 1.08
FXN-201ENST00000377270 RTN4Q9NQC3 1192 aaKnown RBP21.79■■□□□ 1.08
FXN-201ENST00000377270 MTUS2Q5JR59 1369 aa21.79■■□□□ 1.08
FXN-201ENST00000377270 IL27Q8NEV9 243 aa21.79■■□□□ 1.08
FXN-201ENST00000377270 PBRM1Q86U86 1689 aa21.77■■□□□ 1.08
FXN-201ENST00000377270 GRIN2BQ13224 1484 aa21.74■■□□□ 1.07
FXN-201ENST00000377270 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.74■■□□□ 1.07
FXN-201ENST00000377270 FANCIQ9NVI1 1328 aa21.73■■□□□ 1.07
FXN-201ENST00000377270 MAPKBP1O60336 1514 aa21.73■■□□□ 1.07
FXN-201ENST00000377270 FGD6Q6ZV73 1430 aa21.72■■□□□ 1.07
FXN-201ENST00000377270 LRRIQ1Q96JM4 1722 aa21.71■■□□□ 1.07
FXN-201ENST00000377270 ADAMTS12P58397 1594 aa21.7■■□□□ 1.06
FXN-201ENST00000377270 ZNF608Q9ULD9 1512 aaPredicted RBP21.67■■□□□ 1.06
FXN-201ENST00000377270 IFT140Q96RY7 1462 aa21.67■■□□□ 1.06
FXN-201ENST00000377270 IQGAP2Q13576 1575 aa21.67■■□□□ 1.06
FXN-201ENST00000377270 THOC2Q8NI27 1593 aaKnown RBP21.67■■□□□ 1.06
FXN-201ENST00000377270 NCOA2Q15596 1464 aa21.65■■□□□ 1.06
FXN-201ENST00000377270 WDR62O43379 1518 aa21.63■■□□□ 1.05
FXN-201ENST00000377270 SIN3AQ96ST3 1273 aa21.63■■□□□ 1.05
FXN-201ENST00000377270 MYOM3Q5VTT5 1437 aa21.62■■□□□ 1.05
FXN-201ENST00000377270 EHBP1L1Q8N3D4 1523 aa21.6■■□□□ 1.05
FXN-201ENST00000377270 SUPT6HQ7KZ85 1726 aaKnown RBP21.6■■□□□ 1.05
FXN-201ENST00000377270 CCDC18Q5T9S5 1454 aa21.59■■□□□ 1.05
FXN-201ENST00000377270 FKBP8Q14318 412 aa21.58■■□□□ 1.05
FXN-201ENST00000377270 PTPRKQ15262 1439 aa21.58■■□□□ 1.04
FXN-201ENST00000377270 MAGI3Q5TCQ9 1506 aa21.57■■□□□ 1.04
FXN-201ENST00000377270 ERCC6Q03468 1493 aa21.56■■□□□ 1.04
FXN-201ENST00000377270 HECW1Q76N89 1606 aa21.56■■□□□ 1.04
FXN-201ENST00000377270 ARID3CA6NKF2 412 aa21.55■■□□□ 1.04
FXN-201ENST00000377270 UGGT2Q9NYU1 1516 aa21.54■■□□□ 1.04
FXN-201ENST00000377270 EPRSP07814 1512 aaKnown RBP21.53■■□□□ 1.04
FXN-201ENST00000377270 HFM1A2PYH4 1435 aa21.52■■□□□ 1.04
FXN-201ENST00000377270 ARHGEF11O15085 1522 aa21.51■■□□□ 1.03
FXN-201ENST00000377270 KIAA0586Q9BVV6 1533 aa21.51■■□□□ 1.03
FXN-201ENST00000377270 NBR1Q14596 966 aa21.5■■□□□ 1.03
FXN-201ENST00000377270 PTPN23Q9H3S7 1636 aa21.5■■□□□ 1.03
FXN-201ENST00000377270 CDK13Q14004 1512 aaKnown RBP21.49■■□□□ 1.03
FXN-201ENST00000377270 TIMELESSQ9UNS1 1208 aa21.49■■□□□ 1.03
FXN-201ENST00000377270 EIF4G3O43432 1585 aaKnown RBP21.49■■□□□ 1.03
FXN-201ENST00000377270 NEFLP07196 543 aa21.48■■□□□ 1.03
FXN-201ENST00000377270 GRIN2AQ12879 1464 aa21.47■■□□□ 1.03
FXN-201ENST00000377270 NAIPQ13075 1403 aa21.47■■□□□ 1.03
FXN-201ENST00000377270 ZMYND15Q9H091 742 aa21.46■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms