RNA–Protein interactions for RNA: ENST00000361339.9

IFT140-201, Transcript of intraflagellar transport 140, humanhuman

TSL 1 (best) BASIC

Gene IFT140, Length 2,987 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140-201ENST00000361339 TOPBP1Q92547 1522 aa23.75■■□□□ 1.39
IFT140-201ENST00000361339 CCNB3Q8WWL7 1395 aa23.74■■□□□ 1.39
IFT140-201ENST00000361339 FHOD3Q2V2M9 1422 aa23.7■■□□□ 1.38
IFT140-201ENST00000361339 DNMBPQ6XZF7 1577 aa23.7■■□□□ 1.38
IFT140-201ENST00000361339 TDRD9Q8NDG6 1382 aaKnown RBP23.66■■□□□ 1.38
IFT140-201ENST00000361339 TIAM1Q13009 1591 aa23.65■■□□□ 1.38
IFT140-201ENST00000361339 PHLDB1Q86UU1 1377 aa23.65■■□□□ 1.38
IFT140-201ENST00000361339 URB2Q14146 1524 aaKnown RBP23.64■■□□□ 1.38
IFT140-201ENST00000361339 ABCA10Q8WWZ4 1543 aa23.64■■□□□ 1.38
IFT140-201ENST00000361339 FAM50AQ14320 339 aaKnown RBP23.62■■□□□ 1.37
IFT140-201ENST00000361339 PCF11O94913 1555 aaKnown RBP23.61■■□□□ 1.37
IFT140-201ENST00000361339 LRRC9Q6ZRR7 1453 aa23.6■■□□□ 1.37
IFT140-201ENST00000361339 RAB3GAP2Q9H2M9 1393 aa23.57■■□□□ 1.36
IFT140-201ENST00000361339 FHAD1B1AJZ9 1412 aa23.49■■□□□ 1.35
IFT140-201ENST00000361339 CLSPNQ9HAW4 1339 aa23.48■■□□□ 1.35
IFT140-201ENST00000361339 LAMC3Q9Y6N6 1575 aa23.46■■□□□ 1.35
IFT140-201ENST00000361339 MAP3K1Q13233 1512 aa23.45■■□□□ 1.34
IFT140-201ENST00000361339 SIN3AQ96ST3 1273 aa23.44■■□□□ 1.34
IFT140-201ENST00000361339 SUPT16HQ9Y5B9 1047 aaKnown RBP23.44■■□□□ 1.34
IFT140-201ENST00000361339 MAPKBP1O60336 1514 aa23.42■■□□□ 1.34
IFT140-201ENST00000361339 GAPVD1Q14C86 1478 aa23.41■■□□□ 1.34
IFT140-201ENST00000361339 KIF21AQ7Z4S6 1674 aa23.41■■□□□ 1.34
IFT140-201ENST00000361339 CFAP43Q8NDM7 1665 aa23.41■■□□□ 1.34
IFT140-201ENST00000361339 WDR97A6NE52 1622 aa23.4■■□□□ 1.34
IFT140-201ENST00000361339 CUL7Q14999 1698 aa23.4■■□□□ 1.34
IFT140-201ENST00000361339 SETD5Q9C0A6 1442 aa23.39■■□□□ 1.34
IFT140-201ENST00000361339 CASKIN1Q8WXD9 1431 aa23.38■■□□□ 1.33
IFT140-201ENST00000361339 PDS5BQ9NTI5 1447 aa23.38■■□□□ 1.33
IFT140-201ENST00000361339 BCL11AQ9H165 835 aa23.38■■□□□ 1.33
IFT140-201ENST00000361339 CTTNBP2Q8WZ74 1663 aa23.38■■□□□ 1.33
IFT140-201ENST00000361339 BCANQ96GW7 911 aa23.36■■□□□ 1.33
IFT140-201ENST00000361339 FYCO1Q9BQS8 1478 aa23.36■■□□□ 1.33
IFT140-201ENST00000361339 ABCA5Q8WWZ7 1642 aa23.36■■□□□ 1.33
IFT140-201ENST00000361339 ARID3CA6NKF2 412 aa23.34■■□□□ 1.33
IFT140-201ENST00000361339 TSHZ2Q9NRE2 1034 aa23.34■■□□□ 1.33
IFT140-201ENST00000361339 EFCAB5A4FU69 1503 aa23.34■■□□□ 1.33
IFT140-201ENST00000361339 SNAPC4Q5SXM2 1469 aa23.33■■□□□ 1.32
IFT140-201ENST00000361339 ANP32EQ9BTT0 268 aa23.33■■□□□ 1.32
IFT140-201ENST00000361339 AQRO60306 1485 aaKnown RBP eCLIP23.31■■□□□ 1.32
IFT140-201ENST00000361339 MTUS2Q5JR59 1369 aa23.28■■□□□ 1.32
IFT140-201ENST00000361339 FMN1Q68DA7 1419 aa23.27■■□□□ 1.32
IFT140-201ENST00000361339 LRRIQ1Q96JM4 1722 aa23.26■■□□□ 1.31
IFT140-201ENST00000361339 HIRIP3Q9BW71 556 aaPredicted RBP23.26■■□□□ 1.31
IFT140-201ENST00000361339 PTPRKQ15262 1439 aa23.25■■□□□ 1.31
IFT140-201ENST00000361339 TARBP1Q13395 1621 aaKnown RBP23.24■■□□□ 1.31
IFT140-201ENST00000361339 FGD6Q6ZV73 1430 aa23.23■■□□□ 1.31
IFT140-201ENST00000361339 SAMD9Q5K651 1589 aa23.21■■□□□ 1.31
IFT140-201ENST00000361339 KCNH8Q96L42 1107 aa23.2■■□□□ 1.3
IFT140-201ENST00000361339 GRIN2BQ13224 1484 aa23.18■■□□□ 1.3
IFT140-201ENST00000361339 NCOA2Q15596 1464 aa23.16■■□□□ 1.3
IFT140-201ENST00000361339 MAGI3Q5TCQ9 1506 aa23.15■■□□□ 1.3
IFT140-201ENST00000361339 ZNF608Q9ULD9 1512 aaPredicted RBP23.14■■□□□ 1.29
IFT140-201ENST00000361339 CHIC2Q9UKJ5 165 aa23.14■■□□□ 1.29
IFT140-201ENST00000361339 DDX10Q13206 875 aaKnown RBP23.09■■□□□ 1.29
IFT140-201ENST00000361339 RRP7BPQ9NSQ0 103 aa23.09■■□□□ 1.29
IFT140-201ENST00000361339 PBRM1Q86U86 1689 aa23.08■■□□□ 1.29
IFT140-201ENST00000361339 MYOM3Q5VTT5 1437 aa23.07■■□□□ 1.28
IFT140-201ENST00000361339 CCDC18Q5T9S5 1454 aa23.07■■□□□ 1.28
IFT140-201ENST00000361339 CDK13Q14004 1512 aaKnown RBP23.06■■□□□ 1.28
IFT140-201ENST00000361339 MRC2Q9UBG0 1479 aa23.05■■□□□ 1.28
IFT140-201ENST00000361339 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.05■■□□□ 1.28
IFT140-201ENST00000361339 ADAMTS12P58397 1594 aa23.02■■□□□ 1.28
IFT140-201ENST00000361339 NAIPQ13075 1403 aa23.02■■□□□ 1.27
IFT140-201ENST00000361339 PPP1R15AO75807 674 aaPredicted RBP23.01■■□□□ 1.27
IFT140-201ENST00000361339 IQGAP2Q13576 1575 aa23.01■■□□□ 1.27
IFT140-201ENST00000361339 FKBP8Q14318 412 aa23■■□□□ 1.27
IFT140-201ENST00000361339 HFM1A2PYH4 1435 aa23■■□□□ 1.27
IFT140-201ENST00000361339 PTPN23Q9H3S7 1636 aa22.99■■□□□ 1.27
IFT140-201ENST00000361339 SUPT6HQ7KZ85 1726 aaKnown RBP22.98■■□□□ 1.27
IFT140-201ENST00000361339 EHBP1L1Q8N3D4 1523 aa22.98■■□□□ 1.27
IFT140-201ENST00000361339 UGGT2Q9NYU1 1516 aa22.98■■□□□ 1.27
IFT140-201ENST00000361339 EPRSP07814 1512 aaKnown RBP22.96■■□□□ 1.27
IFT140-201ENST00000361339 UACAQ9BZF9 1416 aa22.93■■□□□ 1.26
IFT140-201ENST00000361339 THOC2Q8NI27 1593 aaKnown RBP22.93■■□□□ 1.26
IFT140-201ENST00000361339 TONSLQ96HA7 1378 aa22.92■■□□□ 1.26
IFT140-201ENST00000361339 FOXD1Q16676 465 aa22.92■■□□□ 1.26
IFT140-201ENST00000361339 ARHGEF11O15085 1522 aa22.92■■□□□ 1.26
IFT140-201ENST00000361339 TRIM52Q96A61 297 aa22.91■■□□□ 1.26
IFT140-201ENST00000361339 KDM6BO15054 1643 aa22.91■■□□□ 1.26
IFT140-201ENST00000361339 ZNF644Q9H582 1327 aaPredicted RBP22.9■■□□□ 1.26
IFT140-201ENST00000361339 FBLN2P98095 1184 aa22.9■■□□□ 1.26
IFT140-201ENST00000361339 HECW1Q76N89 1606 aa22.89■■□□□ 1.25
IFT140-201ENST00000361339 WDR62O43379 1518 aa22.88■■□□□ 1.25
IFT140-201ENST00000361339 IFT140Q96RY7 1462 aa22.86■■□□□ 1.25
IFT140-201ENST00000361339 DISP1Q96F81 1524 aa22.85■■□□□ 1.25
IFT140-201ENST00000361339 DENND4BO75064 1496 aaPredicted RBP22.85■■□□□ 1.25
IFT140-201ENST00000361339 TIMELESSQ9UNS1 1208 aa22.83■■□□□ 1.25
IFT140-201ENST00000361339 RBM19Q9Y4C8 960 aaKnown RBP22.83■■□□□ 1.25
IFT140-201ENST00000361339 ERCC6Q03468 1493 aa22.81■■□□□ 1.24
IFT140-201ENST00000361339 EIF4G3O43432 1585 aaKnown RBP22.81■■□□□ 1.24
IFT140-201ENST00000361339 TCOF1Q13428 1488 aaKnown RBP22.79■■□□□ 1.24
IFT140-201ENST00000361339 GRIN2AQ12879 1464 aa22.79■■□□□ 1.24
IFT140-201ENST00000361339 NUP153P49790 1475 aaKnown RBP22.78■■□□□ 1.24
IFT140-201ENST00000361339 KIAA0586Q9BVV6 1533 aa22.78■■□□□ 1.24
IFT140-201ENST00000361339 KDM5BQ9UGL1 1544 aa22.77■■□□□ 1.24
IFT140-201ENST00000361339 CHMP7Q8WUX9 453 aaPredicted RBP22.77■■□□□ 1.24
IFT140-201ENST00000361339 KIAA0556O60303 1618 aa22.77■■□□□ 1.24
IFT140-201ENST00000361339 MPHOSPH9Q99550 1183 aa22.74■■□□□ 1.23
IFT140-201ENST00000361339 PRG4Q92954 1404 aaPredicted RBP22.74■■□□□ 1.23
IFT140-201ENST00000361339 PLB1Q6P1J6 1458 aa22.73■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 80.2 ms