RNA–Protein interactions for RNA: ENST00000358730.6

RFX3-202, Transcript of regulatory factor X3, humanhuman

TSL 1 (best) BASIC

Gene RFX3, Length 2,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-202ENST00000358730 PCF11O94913 1555 aaKnown RBP12.58□□□□□ -0.4
RFX3-202ENST00000358730 FHAD1B1AJZ9 1412 aa12.57□□□□□ -0.4
RFX3-202ENST00000358730 CFAP43Q8NDM7 1665 aa12.57□□□□□ -0.4
RFX3-202ENST00000358730 RAD54L2Q9Y4B4 1467 aa12.56□□□□□ -0.4
RFX3-202ENST00000358730 TOPBP1Q92547 1522 aa12.56□□□□□ -0.4
RFX3-202ENST00000358730 POLA1P09884 1462 aaPredicted RBP12.56□□□□□ -0.4
RFX3-202ENST00000358730 ABCA10Q8WWZ4 1543 aa12.56□□□□□ -0.4
RFX3-202ENST00000358730 RAB3GAP2Q9H2M9 1393 aa12.55□□□□□ -0.4
RFX3-202ENST00000358730 NESP48681 1621 aa12.54□□□□□ -0.4
RFX3-202ENST00000358730 P3H3Q8IVL6 736 aa12.53□□□□□ -0.4
RFX3-202ENST00000358730 CUL7Q14999 1698 aa12.53□□□□□ -0.4
RFX3-202ENST00000358730 PHLDB1Q86UU1 1377 aa12.53□□□□□ -0.4
RFX3-202ENST00000358730 FHOD3Q2V2M9 1422 aa12.52□□□□□ -0.4
RFX3-202ENST00000358730 CTTNBP2Q8WZ74 1663 aa12.52□□□□□ -0.41
RFX3-202ENST00000358730 EFCAB5A4FU69 1503 aa12.52□□□□□ -0.41
RFX3-202ENST00000358730 ATP1B4Q9UN42 357 aaPredicted RBP12.51□□□□□ -0.41
RFX3-202ENST00000358730 MAPKBP1O60336 1514 aa12.51□□□□□ -0.41
RFX3-202ENST00000358730 FYCO1Q9BQS8 1478 aa12.5□□□□□ -0.41
RFX3-202ENST00000358730 SETD5Q9C0A6 1442 aa12.49□□□□□ -0.41
RFX3-202ENST00000358730 FAM50AQ14320 339 aaKnown RBP12.49□□□□□ -0.41
RFX3-202ENST00000358730 WDR97A6NE52 1622 aa12.48□□□□□ -0.41
RFX3-202ENST00000358730 CASKIN1Q8WXD9 1431 aa12.46□□□□□ -0.41
RFX3-202ENST00000358730 LAMC3Q9Y6N6 1575 aa12.46□□□□□ -0.41
RFX3-202ENST00000358730 AQRO60306 1485 aaKnown RBP eCLIP12.45□□□□□ -0.42
RFX3-202ENST00000358730 URB2Q14146 1524 aaKnown RBP12.45□□□□□ -0.42
RFX3-202ENST00000358730 ABCA5Q8WWZ7 1642 aa12.42□□□□□ -0.42
RFX3-202ENST00000358730 FMN1Q68DA7 1419 aa12.42□□□□□ -0.42
RFX3-202ENST00000358730 SNAPC4Q5SXM2 1469 aa12.41□□□□□ -0.42
RFX3-202ENST00000358730 TDRD9Q8NDG6 1382 aaKnown RBP12.4□□□□□ -0.43
RFX3-202ENST00000358730 SAMD9Q5K651 1589 aa12.39□□□□□ -0.43
RFX3-202ENST00000358730 GAPVD1Q14C86 1478 aa12.38□□□□□ -0.43
RFX3-202ENST00000358730 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.38□□□□□ -0.43
RFX3-202ENST00000358730 FGD6Q6ZV73 1430 aa12.38□□□□□ -0.43
RFX3-202ENST00000358730 SIN3AQ96ST3 1273 aa12.37□□□□□ -0.43
RFX3-202ENST00000358730 MTUS2Q5JR59 1369 aa12.37□□□□□ -0.43
RFX3-202ENST00000358730 LRRIQ1Q96JM4 1722 aa12.37□□□□□ -0.43
RFX3-202ENST00000358730 PDS5BQ9NTI5 1447 aa12.36□□□□□ -0.43
RFX3-202ENST00000358730 KIF21AQ7Z4S6 1674 aa12.36□□□□□ -0.43
RFX3-202ENST00000358730 THOC2Q8NI27 1593 aaKnown RBP12.33□□□□□ -0.44
RFX3-202ENST00000358730 GRIN2BQ13224 1484 aa12.33□□□□□ -0.44
RFX3-202ENST00000358730 CCDC18Q5T9S5 1454 aa12.32□□□□□ -0.44
RFX3-202ENST00000358730 SUPT6HQ7KZ85 1726 aaKnown RBP12.31□□□□□ -0.44
RFX3-202ENST00000358730 NCOA2Q15596 1464 aa12.31□□□□□ -0.44
RFX3-202ENST00000358730 EHBP1L1Q8N3D4 1523 aa12.31□□□□□ -0.44
RFX3-202ENST00000358730 TARBP1Q13395 1621 aaKnown RBP12.31□□□□□ -0.44
RFX3-202ENST00000358730 TIMELESSQ9UNS1 1208 aa12.3□□□□□ -0.44
RFX3-202ENST00000358730 MYOM3Q5VTT5 1437 aa12.3□□□□□ -0.44
RFX3-202ENST00000358730 PTPN23Q9H3S7 1636 aa12.3□□□□□ -0.44
RFX3-202ENST00000358730 HFM1A2PYH4 1435 aa12.29□□□□□ -0.44
RFX3-202ENST00000358730 DNAJC5BQ9UF47 199 aa12.29□□□□□ -0.44
RFX3-202ENST00000358730 PTPRKQ15262 1439 aa12.29□□□□□ -0.44
RFX3-202ENST00000358730 PBRM1Q86U86 1689 aa12.29□□□□□ -0.44
RFX3-202ENST00000358730 UACAQ9BZF9 1416 aa12.27□□□□□ -0.45
RFX3-202ENST00000358730 DDX10Q13206 875 aaKnown RBP12.26□□□□□ -0.45
RFX3-202ENST00000358730 UGGT2Q9NYU1 1516 aa12.26□□□□□ -0.45
RFX3-202ENST00000358730 TONSLQ96HA7 1378 aa12.26□□□□□ -0.45
RFX3-202ENST00000358730 KCNH8Q96L42 1107 aa12.25□□□□□ -0.45
RFX3-202ENST00000358730 HECW1Q76N89 1606 aa12.25□□□□□ -0.45
RFX3-202ENST00000358730 PPP1R15AO75807 674 aaPredicted RBP12.25□□□□□ -0.45
RFX3-202ENST00000358730 NAIPQ13075 1403 aa12.25□□□□□ -0.45
RFX3-202ENST00000358730 MAGI3Q5TCQ9 1506 aa12.25□□□□□ -0.45
RFX3-202ENST00000358730 IQGAP2Q13576 1575 aa12.24□□□□□ -0.45
RFX3-202ENST00000358730 ADAMTS12P58397 1594 aa12.23□□□□□ -0.45
RFX3-202ENST00000358730 SUPT16HQ9Y5B9 1047 aaKnown RBP12.23□□□□□ -0.45
RFX3-202ENST00000358730 ARHGEF11O15085 1522 aa12.23□□□□□ -0.45
RFX3-202ENST00000358730 HIRIP3Q9BW71 556 aaPredicted RBP12.22□□□□□ -0.45
RFX3-202ENST00000358730 GCC2Q8IWJ2 1684 aa12.19□□□□□ -0.46
RFX3-202ENST00000358730 EPRSP07814 1512 aaKnown RBP12.19□□□□□ -0.46
RFX3-202ENST00000358730 MRC2Q9UBG0 1479 aa12.19□□□□□ -0.46
RFX3-202ENST00000358730 TCOF1Q13428 1488 aaKnown RBP12.19□□□□□ -0.46
RFX3-202ENST00000358730 CDK13Q14004 1512 aaKnown RBP12.19□□□□□ -0.46
RFX3-202ENST00000358730 WDR62O43379 1518 aa12.18□□□□□ -0.46
RFX3-202ENST00000358730 RRP7BPQ9NSQ0 103 aa12.16□□□□□ -0.46
RFX3-202ENST00000358730 CHIC2Q9UKJ5 165 aa12.15□□□□□ -0.46
RFX3-202ENST00000358730 ARID3CA6NKF2 412 aa12.15□□□□□ -0.47
RFX3-202ENST00000358730 ANP32CO43423 234 aa12.15□□□□□ -0.47
RFX3-202ENST00000358730 AKNAQ7Z591 1439 aa12.14□□□□□ -0.47
RFX3-202ENST00000358730 KDM5BQ9UGL1 1544 aa12.14□□□□□ -0.47
RFX3-202ENST00000358730 MIA2Q96PC5 1412 aa12.13□□□□□ -0.47
RFX3-202ENST00000358730 KDM6BO15054 1643 aa12.13□□□□□ -0.47
RFX3-202ENST00000358730 ZNF608Q9ULD9 1512 aaPredicted RBP12.12□□□□□ -0.47
RFX3-202ENST00000358730 CCER2I3L3R5 266 aa12.12□□□□□ -0.47
RFX3-202ENST00000358730 TRIM52Q96A61 297 aa12.12□□□□□ -0.47
RFX3-202ENST00000358730 IFT140Q96RY7 1462 aa12.11□□□□□ -0.47
RFX3-202ENST00000358730 DENND4BO75064 1496 aaPredicted RBP12.11□□□□□ -0.47
RFX3-202ENST00000358730 KIAA0556O60303 1618 aa12.11□□□□□ -0.47
RFX3-202ENST00000358730 KIAA0586Q9BVV6 1533 aa12.08□□□□□ -0.48
RFX3-202ENST00000358730 DISP1Q96F81 1524 aa12.08□□□□□ -0.48
RFX3-202ENST00000358730 EIF4G3O43432 1585 aaKnown RBP12.07□□□□□ -0.48
RFX3-202ENST00000358730 NUP153P49790 1475 aaKnown RBP12.07□□□□□ -0.48
RFX3-202ENST00000358730 RAPGEF6Q8TEU7 1601 aa12.07□□□□□ -0.48
RFX3-202ENST00000358730 DAPK1P53355 1430 aa12.06□□□□□ -0.48
RFX3-202ENST00000358730 GRIN2AQ12879 1464 aa12.06□□□□□ -0.48
RFX3-202ENST00000358730 DNMT1P26358 1616 aaKnown RBP12.06□□□□□ -0.48
RFX3-202ENST00000358730 MPHOSPH9Q99550 1183 aa12.05□□□□□ -0.48
RFX3-202ENST00000358730 BCANQ96GW7 911 aa12.04□□□□□ -0.48
RFX3-202ENST00000358730 FKBP8Q14318 412 aa12.04□□□□□ -0.48
RFX3-202ENST00000358730 HSPA5P11021 654 aaKnown RBP12.03□□□□□ -0.48
RFX3-202ENST00000358730 ROCK1Q13464 1354 aa12.03□□□□□ -0.48
RFX3-202ENST00000358730 FOXD1Q16676 465 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms