RNA–Protein interactions for RNA: ENST00000349038.8

PTBP1-201, Transcript of polypyrimidine tract binding protein 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PTBP1, Length 3,155 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTBP1-201ENST00000349038 CCDC136Q96JN2 1154 aa21.5■■□□□ 1.03
PTBP1-201ENST00000349038 PRXQ9BXM0 1461 aa21.5■■□□□ 1.03
PTBP1-201ENST00000349038 BIVM-ERCC5R4GMW8 1640 aa21.49■■□□□ 1.03
PTBP1-201ENST00000349038 DEKP35659 375 aaKnown RBP21.47■■□□□ 1.03
PTBP1-201ENST00000349038 RRBP1Q9P2E9 1410 aaKnown RBP21.45■■□□□ 1.02
PTBP1-201ENST00000349038 CUX2O14529 1486 aa21.44■■□□□ 1.02
PTBP1-201ENST00000349038 CDK11AQ9UQ88 783 aaPredicted RBP21.42■■□□□ 1.02
PTBP1-201ENST00000349038 KANK4Q5T7N3 995 aaPredicted RBP21.41■■□□□ 1.02
PTBP1-201ENST00000349038 CNGB1Q14028 1251 aaPredicted RBP21.39■■□□□ 1.01
PTBP1-201ENST00000349038 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.34■■□□□ 1.01
PTBP1-201ENST00000349038 SENP3-EIF4A1A0A087X0R7 540 aa21.29■■□□□ 1
PTBP1-201ENST00000349038 CCNB3Q8WWL7 1395 aa21.29■■□□□ 1
PTBP1-201ENST00000349038 SALL2Q9Y467 1007 aaPredicted RBP21.29■■□□□ 1
PTBP1-201ENST00000349038 HNRNPUQ00839 825 aaKnown RBP eCLIP21.27■■□□□ 1
PTBP1-201ENST00000349038 CUX1P39880 1505 aa21.26■□□□□ 0.99
PTBP1-201ENST00000349038 ARHGAP35Q9NRY4 1499 aa21.24■□□□□ 0.99
PTBP1-201ENST00000349038 SIN3AQ96ST3 1273 aa21.24■□□□□ 0.99
PTBP1-201ENST00000349038 KIF27Q86VH2 1401 aa21.24■□□□□ 0.99
PTBP1-201ENST00000349038 ANP32CO43423 234 aa21.24■□□□□ 0.99
PTBP1-201ENST00000349038 LAMC3Q9Y6N6 1575 aa21.22■□□□□ 0.99
PTBP1-201ENST00000349038 B4GALNT3Q6L9W6 998 aa21.2■□□□□ 0.98
PTBP1-201ENST00000349038 MAPKBP1O60336 1514 aa21.2■□□□□ 0.98
PTBP1-201ENST00000349038 RAB3GAP2Q9H2M9 1393 aa21.15■□□□□ 0.98
PTBP1-201ENST00000349038 ATP1B4Q9UN42 357 aaPredicted RBP21.14■□□□□ 0.98
PTBP1-201ENST00000349038 MAP3K1Q13233 1512 aa21.14■□□□□ 0.97
PTBP1-201ENST00000349038 RTL5Q5HYW3 569 aaPredicted RBP21.12■□□□□ 0.97
PTBP1-201ENST00000349038 IL27Q8NEV9 243 aa21.12■□□□□ 0.97
PTBP1-201ENST00000349038 EIF5BO60841 1220 aaKnown RBP21.11■□□□□ 0.97
PTBP1-201ENST00000349038 PAK3O75914 559 aaPredicted RBP21.1■□□□□ 0.97
PTBP1-201ENST00000349038 TIAM1Q13009 1591 aa21.09■□□□□ 0.97
PTBP1-201ENST00000349038 NESP48681 1621 aa21.08■□□□□ 0.96
PTBP1-201ENST00000349038 NPM2Q86SE8 214 aaKnown RBP21.08■□□□□ 0.96
PTBP1-201ENST00000349038 CFTRP13569 1480 aa21.07■□□□□ 0.96
PTBP1-201ENST00000349038 SETD5Q9C0A6 1442 aa21.06■□□□□ 0.96
PTBP1-201ENST00000349038 CADPSQ9ULU8 1353 aa21.05■□□□□ 0.96
PTBP1-201ENST00000349038 FAM50AQ14320 339 aaKnown RBP21.03■□□□□ 0.96
PTBP1-201ENST00000349038 FANCIQ9NVI1 1328 aa21.02■□□□□ 0.96
PTBP1-201ENST00000349038 WDR97A6NE52 1622 aa21.02■□□□□ 0.95
PTBP1-201ENST00000349038 PRDM2Q13029 1718 aa21.01■□□□□ 0.95
PTBP1-201ENST00000349038 FAM9BQ8IZU0 186 aa21.01■□□□□ 0.95
PTBP1-201ENST00000349038 LRRC9Q6ZRR7 1453 aa21.01■□□□□ 0.95
PTBP1-201ENST00000349038 NOP58Q9Y2X3 529 aaKnown RBP21.01■□□□□ 0.95
PTBP1-201ENST00000349038 ERCC6Q03468 1493 aa20.99■□□□□ 0.95
PTBP1-201ENST00000349038 IGF1RP08069 1367 aa20.99■□□□□ 0.95
PTBP1-201ENST00000349038 PDS5BQ9NTI5 1447 aa20.98■□□□□ 0.95
PTBP1-201ENST00000349038 PHLDB1Q86UU1 1377 aa20.97■□□□□ 0.95
PTBP1-201ENST00000349038 KIF21AQ7Z4S6 1674 aa20.97■□□□□ 0.95
PTBP1-201ENST00000349038 PPP1R15AO75807 674 aaPredicted RBP20.95■□□□□ 0.94
PTBP1-201ENST00000349038 LAS1LQ9Y4W2 734 aaKnown RBP20.94■□□□□ 0.94
PTBP1-201ENST00000349038 TIMELESSQ9UNS1 1208 aa20.93■□□□□ 0.94
PTBP1-201ENST00000349038 THOC2Q8NI27 1593 aaKnown RBP20.93■□□□□ 0.94
PTBP1-201ENST00000349038 CFAP43Q8NDM7 1665 aa20.92■□□□□ 0.94
PTBP1-201ENST00000349038 CARMIL1Q5VZK9 1371 aa20.88■□□□□ 0.93
PTBP1-201ENST00000349038 FHAD1B1AJZ9 1412 aa20.88■□□□□ 0.93
PTBP1-201ENST00000349038 CCER2I3L3R5 266 aa20.86■□□□□ 0.93
PTBP1-201ENST00000349038 POLR3GLQ9BT43 218 aa20.86■□□□□ 0.93
PTBP1-201ENST00000349038 ZBTB47Q9UFB7 747 aaPredicted RBP20.86■□□□□ 0.93
PTBP1-201ENST00000349038 PCF11O94913 1555 aaKnown RBP20.85■□□□□ 0.93
PTBP1-201ENST00000349038 ANP32AP39687 249 aaKnown RBP20.85■□□□□ 0.93
PTBP1-201ENST00000349038 PPP4R2Q9NY27 417 aa20.83■□□□□ 0.93
PTBP1-201ENST00000349038 MYT1LQ9UL68 1186 aa20.82■□□□□ 0.92
PTBP1-201ENST00000349038 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.82■□□□□ 0.923e-7■■■□□ 16.4
PTBP1-201ENST00000349038 FANCD2Q9BXW9 1451 aa20.81■□□□□ 0.92
PTBP1-201ENST00000349038 FGD5Q6ZNL6 1462 aa20.79■□□□□ 0.92
PTBP1-201ENST00000349038 MRC2Q9UBG0 1479 aa20.79■□□□□ 0.92
PTBP1-201ENST00000349038 WDR62O43379 1518 aa20.78■□□□□ 0.92
PTBP1-201ENST00000349038 CCDC184Q52MB2 194 aa20.77■□□□□ 0.92
PTBP1-201ENST00000349038 P3H3Q8IVL6 736 aa20.76■□□□□ 0.91
PTBP1-201ENST00000349038 FYCO1Q9BQS8 1478 aa20.75■□□□□ 0.91
PTBP1-201ENST00000349038 NEFMP07197 916 aa20.73■□□□□ 0.91
PTBP1-201ENST00000349038 AQRO60306 1485 aaKnown RBP eCLIP20.72■□□□□ 0.913e-8■■■■■ 33.8
PTBP1-201ENST00000349038 CASKIN1Q8WXD9 1431 aa20.71■□□□□ 0.91
PTBP1-201ENST00000349038 EFCAB5A4FU69 1503 aa20.7■□□□□ 0.9
PTBP1-201ENST00000349038 MRS2Q9HD23 443 aa20.69■□□□□ 0.9
PTBP1-201ENST00000349038 FHOD3Q2V2M9 1422 aa20.69■□□□□ 0.9
PTBP1-201ENST00000349038 FGD6Q6ZV73 1430 aa20.65■□□□□ 0.9
PTBP1-201ENST00000349038 BRPF3Q9ULD4 1205 aa20.65■□□□□ 0.9
PTBP1-201ENST00000349038 TONSLQ96HA7 1378 aa20.64■□□□□ 0.9
PTBP1-201ENST00000349038 CCDC18Q5T9S5 1454 aa20.64■□□□□ 0.89
PTBP1-201ENST00000349038 IPO9Q96P70 1041 aaKnown RBP20.63■□□□□ 0.89
PTBP1-201ENST00000349038 UACAQ9BZF9 1416 aa20.63■□□□□ 0.89
PTBP1-201ENST00000349038 HFM1A2PYH4 1435 aa20.62■□□□□ 0.89
PTBP1-201ENST00000349038 URB2Q14146 1524 aaKnown RBP20.61■□□□□ 0.89
PTBP1-201ENST00000349038 PTPN23Q9H3S7 1636 aa20.6■□□□□ 0.89
PTBP1-201ENST00000349038 PTPRKQ15262 1439 aa20.6■□□□□ 0.89
PTBP1-201ENST00000349038 KDM5BQ9UGL1 1544 aa20.59■□□□□ 0.89
PTBP1-201ENST00000349038 SNAPC4Q5SXM2 1469 aa20.57■□□□□ 0.88
PTBP1-201ENST00000349038 ABCA10Q8WWZ4 1543 aa20.57■□□□□ 0.88
PTBP1-201ENST00000349038 ARXQ96QS3 562 aa20.56■□□□□ 0.88
PTBP1-201ENST00000349038 CTTNBP2Q8WZ74 1663 aa20.55■□□□□ 0.88
PTBP1-201ENST00000349038 FMN1Q68DA7 1419 aa20.55■□□□□ 0.88
PTBP1-201ENST00000349038 DNMBPQ6XZF7 1577 aa20.55■□□□□ 0.88
PTBP1-201ENST00000349038 CUL7Q14999 1698 aa20.54■□□□□ 0.88
PTBP1-201ENST00000349038 SLC4A3P48751 1232 aa20.54■□□□□ 0.88
PTBP1-201ENST00000349038 NAIPQ13075 1403 aa20.53■□□□□ 0.88
PTBP1-201ENST00000349038 ERICH6BQ5W0A0 696 aa20.52■□□□□ 0.88
PTBP1-201ENST00000349038 RAD54L2Q9Y4B4 1467 aa20.52■□□□□ 0.87
PTBP1-201ENST00000349038 TOPBP1Q92547 1522 aa20.51■□□□□ 0.87
PTBP1-201ENST00000349038 SKAP1Q86WV1 359 aa20.49■□□□□ 0.87
PTBP1-201ENST00000349038 MTUS2Q5JR59 1369 aa20.48■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms