RNA–Protein interactions for RNA: ENST00000343599.5

ZNF540-202, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 5 BASIC

Gene ZNF540, Length 3,073 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-202ENST00000343599 PHLDB1Q86UU1 1377 aa13.45□□□□□ -0.26
ZNF540-202ENST00000343599 ADCY10Q96PN6 1610 aa13.44□□□□□ -0.26
ZNF540-202ENST00000343599 KDM5BQ9UGL1 1544 aa13.44□□□□□ -0.26
ZNF540-202ENST00000343599 AQRO60306 1485 aaKnown RBP eCLIP13.43□□□□□ -0.26
ZNF540-202ENST00000343599 CHIC1Q5VXU3 224 aa13.41□□□□□ -0.26
ZNF540-202ENST00000343599 CTTNBP2Q8WZ74 1663 aa13.41□□□□□ -0.26
ZNF540-202ENST00000343599 PLB1Q6P1J6 1458 aa13.39□□□□□ -0.27
ZNF540-202ENST00000343599 CFAP74Q9C0B2 1584 aa13.38□□□□□ -0.27
ZNF540-202ENST00000343599 TEX14Q8IWB6 1497 aa13.37□□□□□ -0.27
ZNF540-202ENST00000343599 RAD54L2Q9Y4B4 1467 aa13.37□□□□□ -0.27
ZNF540-202ENST00000343599 MAGI3Q5TCQ9 1506 aa13.35□□□□□ -0.27
ZNF540-202ENST00000343599 ABCC2Q92887 1545 aa13.33□□□□□ -0.28
ZNF540-202ENST00000343599 KDM6BO15054 1643 aa13.32□□□□□ -0.28
ZNF540-202ENST00000343599 IQGAP2Q13576 1575 aa13.3□□□□□ -0.28
ZNF540-202ENST00000343599 ARAP3Q8WWN8 1544 aa13.29□□□□□ -0.28
ZNF540-202ENST00000343599 REREQ9P2R6 1566 aa13.25□□□□□ -0.29
ZNF540-202ENST00000343599 ABCA8O94911 1581 aa13.24□□□□□ -0.29
ZNF540-202ENST00000343599 GOLGA3Q08378 1498 aa13.24□□□□□ -0.29
ZNF540-202ENST00000343599 KIAA0556O60303 1618 aa13.23□□□□□ -0.29
ZNF540-202ENST00000343599 ABCA9Q8IUA7 1624 aa13.23□□□□□ -0.29
ZNF540-202ENST00000343599 ZCCHC11Q5TAX3 1644 aaKnown RBP13.21□□□□□ -0.3
ZNF540-202ENST00000343599 ZMYM4Q5VZL5 1548 aa13.21□□□□□ -0.3
ZNF540-202ENST00000343599 FAM135AQ9P2D6 1515 aa13.19□□□□□ -0.3
ZNF540-202ENST00000343599 ADAMTSL3P82987 1691 aa13.19□□□□□ -0.3
ZNF540-202ENST00000343599 CARMIL2Q6F5E8 1435 aa13.18□□□□□ -0.3
ZNF540-202ENST00000343599 KIF27Q86VH2 1401 aa13.18□□□□□ -0.3
ZNF540-202ENST00000343599 SAMD9Q5K651 1589 aa13.18□□□□□ -0.3
ZNF540-202ENST00000343599 IQSEC2Q5JU85 1478 aa13.18□□□□□ -0.3
ZNF540-202ENST00000343599 SLC24A1O60721 1099 aa13.17□□□□□ -0.3
ZNF540-202ENST00000343599 TNIKQ9UKE5 1360 aa13.16□□□□□ -0.3
ZNF540-202ENST00000343599 PRG4Q92954 1404 aaPredicted RBP13.14□□□□□ -0.31
ZNF540-202ENST00000343599 CHMP7Q8WUX9 453 aaPredicted RBP13.14□□□□□ -0.31
ZNF540-202ENST00000343599 TRIM41Q8WV44 630 aa13.14□□□□□ -0.31
ZNF540-202ENST00000343599 NEO1Q92859 1461 aa13.13□□□□□ -0.31
ZNF540-202ENST00000343599 TDRD9Q8NDG6 1382 aaKnown RBP13.13□□□□□ -0.31
ZNF540-202ENST00000343599 EPRSP07814 1512 aaKnown RBP13.12□□□□□ -0.31
ZNF540-202ENST00000343599 DISP1Q96F81 1524 aa13.1□□□□□ -0.31
ZNF540-202ENST00000343599 MAGI2Q86UL8 1455 aa13.09□□□□□ -0.31
ZNF540-202ENST00000343599 EFCAB5A4FU69 1503 aa13.08□□□□□ -0.32
ZNF540-202ENST00000343599 UACAQ9BZF9 1416 aa13.07□□□□□ -0.32
ZNF540-202ENST00000343599 EEA1Q15075 1411 aa13.06□□□□□ -0.32
ZNF540-202ENST00000343599 BCORL1Q5H9F3 1711 aa13.05□□□□□ -0.32
ZNF540-202ENST00000343599 MROH2AA6NES4 1674 aa13.04□□□□□ -0.32
ZNF540-202ENST00000343599 WDR7Q9Y4E6 1490 aa13.04□□□□□ -0.32
ZNF540-202ENST00000343599 IGF1RP08069 1367 aa13.03□□□□□ -0.32
ZNF540-202ENST00000343599 RAPGEF2Q9Y4G8 1499 aa13.02□□□□□ -0.32
ZNF540-202ENST00000343599 ARHGEF40Q8TER5 1519 aa13.02□□□□□ -0.32
ZNF540-202ENST00000343599 RICTORQ6R327 1708 aa13.01□□□□□ -0.33
ZNF540-202ENST00000343599 TTC37Q6PGP7 1564 aa13□□□□□ -0.33
ZNF540-202ENST00000343599 AEBP2Q6ZN18 517 aaPredicted RBP12.97□□□□□ -0.33
ZNF540-202ENST00000343599 PRXQ9BXM0 1461 aa12.97□□□□□ -0.33
ZNF540-202ENST00000343599 KIF21BO75037 1637 aa12.96□□□□□ -0.34
ZNF540-202ENST00000343599 EHMT2Q96KQ7 1210 aa12.96□□□□□ -0.34
ZNF540-202ENST00000343599 CYB5RLQ6IPT4 315 aa12.95□□□□□ -0.34
ZNF540-202ENST00000343599 FRMPD1Q5SYB0 1578 aa12.94□□□□□ -0.34
ZNF540-202ENST00000343599 ASXL2Q76L83 1435 aa12.94□□□□□ -0.34
ZNF540-202ENST00000343599 RAPGEF6Q8TEU7 1601 aa12.93□□□□□ -0.34
ZNF540-202ENST00000343599 JPH4Q96JJ6 628 aa12.93□□□□□ -0.34
ZNF540-202ENST00000343599 PREX1Q8TCU6 1659 aa12.92□□□□□ -0.34
ZNF540-202ENST00000343599 AGLP35573 1532 aa12.91□□□□□ -0.34
ZNF540-202ENST00000343599 PTPRGP23470 1445 aa12.91□□□□□ -0.34
ZNF540-202ENST00000343599 FHOD3Q2V2M9 1422 aa12.9□□□□□ -0.34
ZNF540-202ENST00000343599 ADGRL1O94910 1474 aa12.9□□□□□ -0.34
ZNF540-202ENST00000343599 ZNF142P52746 1687 aaPredicted RBP12.89□□□□□ -0.35
ZNF540-202ENST00000343599 FER1L4A9Z1Z3 1794 aa12.88□□□□□ -0.35
ZNF540-202ENST00000343599 HECW2Q9P2P5 1572 aa12.88□□□□□ -0.35
ZNF540-202ENST00000343599 CARMIL1Q5VZK9 1371 aa12.86□□□□□ -0.35
ZNF540-202ENST00000343599 KDM5CP41229 1560 aa12.86□□□□□ -0.35
ZNF540-202ENST00000343599 ARHGEF12Q9NZN5 1544 aa12.84□□□□□ -0.35
ZNF540-202ENST00000343599 NPM1P06748 294 aaKnown RBP eCLIP12.82□□□□□ -0.36
ZNF540-202ENST00000343599 MYO5CQ9NQX4 1742 aa12.8□□□□□ -0.36
ZNF540-202ENST00000343599 PCF11O94913 1555 aaKnown RBP12.8□□□□□ -0.36
ZNF540-202ENST00000343599 LMTK3Q96Q04 1460 aa12.79□□□□□ -0.36
ZNF540-202ENST00000343599 TSPOAP1O95153 1857 aa12.78□□□□□ -0.36
ZNF540-202ENST00000343599 KDM5AP29375 1690 aaKnown RBP12.77□□□□□ -0.37
ZNF540-202ENST00000343599 FANCAO15360 1455 aa12.76□□□□□ -0.37
ZNF540-202ENST00000343599 HECW1Q76N89 1606 aa12.76□□□□□ -0.37
ZNF540-202ENST00000343599 ITSN2Q9NZM3 1697 aa12.73□□□□□ -0.37
ZNF540-202ENST00000343599 PTPRTO14522 1441 aa12.72□□□□□ -0.37
ZNF540-202ENST00000343599 TRHP20396 242 aaPredicted RBP12.71□□□□□ -0.38
ZNF540-202ENST00000343599 POGZQ7Z3K3 1410 aa12.71□□□□□ -0.38
ZNF540-202ENST00000343599 PREX2Q70Z35 1606 aa12.7□□□□□ -0.38
ZNF540-202ENST00000343599 ZFYVE16Q7Z3T8 1539 aa12.68□□□□□ -0.38
ZNF540-202ENST00000343599 NPATQ14207 1427 aa12.67□□□□□ -0.38
ZNF540-202ENST00000343599 ZC3H13Q5T200 1668 aaKnown RBP12.67□□□□□ -0.38
ZNF540-202ENST00000343599 ADGBQ8N7X0 1667 aa12.67□□□□□ -0.38
ZNF540-202ENST00000343599 CD109Q6YHK3 1445 aa12.67□□□□□ -0.38
ZNF540-202ENST00000343599 CNTLNQ9NXG0 1405 aa12.66□□□□□ -0.38
ZNF540-202ENST00000343599 MLH3Q9UHC1 1453 aa12.66□□□□□ -0.38
ZNF540-202ENST00000343599 KDM4FA0A1W2PPD8 638 aa12.65□□□□□ -0.38
ZNF540-202ENST00000343599 ATP10BO94823 1461 aa12.65□□□□□ -0.38
ZNF540-202ENST00000343599 CCDC18Q5T9S5 1454 aa12.65□□□□□ -0.38
ZNF540-202ENST00000343599 PTPRMP28827 1452 aa12.64□□□□□ -0.39
ZNF540-202ENST00000343599 PLXNC1O60486 1568 aa12.64□□□□□ -0.39
ZNF540-202ENST00000343599 COL17A1Q9UMD9 1497 aaPredicted RBP12.64□□□□□ -0.39
ZNF540-202ENST00000343599 AKNAQ7Z591 1439 aa12.64□□□□□ -0.39
ZNF540-202ENST00000343599 PLA2R1Q13018 1463 aa12.63□□□□□ -0.39
ZNF540-202ENST00000343599 MADDQ8WXG6 1647 aa12.63□□□□□ -0.39
ZNF540-202ENST00000343599 FAM69CQ0P6D2 419 aa12.62□□□□□ -0.39
ZNF540-202ENST00000343599 PLPPR3Q6T4P5 718 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms