RNA–Protein interactions for RNA: ENST00000343060.4

HOXA1-201, Transcript of homeobox A1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXA1, Length 2,517 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1-201ENST00000343060 TIMELESSQ9UNS1 1208 aa13.73□□□□□ -0.21
HOXA1-201ENST00000343060 NEFLP07196 543 aa13.7□□□□□ -0.22
HOXA1-201ENST00000343060 CFAP43Q8NDM7 1665 aa13.69□□□□□ -0.22
HOXA1-201ENST00000343060 PABPN1Q86U42 306 aaKnown RBP eCLIP13.68□□□□□ -0.22
HOXA1-201ENST00000343060 LRRC9Q6ZRR7 1453 aa13.68□□□□□ -0.22
HOXA1-201ENST00000343060 DDX10Q13206 875 aaKnown RBP13.67□□□□□ -0.22
HOXA1-201ENST00000343060 HMGXB3Q12766 1538 aa13.64□□□□□ -0.23
HOXA1-201ENST00000343060 FANCIQ9NVI1 1328 aa13.64□□□□□ -0.23
HOXA1-201ENST00000343060 PHLDB1Q86UU1 1377 aa13.63□□□□□ -0.23
HOXA1-201ENST00000343060 MSH5O43196 834 aa13.62□□□□□ -0.23
HOXA1-201ENST00000343060 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.61□□□□□ -0.23
HOXA1-201ENST00000343060 ANP32CO43423 234 aa13.6□□□□□ -0.23
HOXA1-201ENST00000343060 ITGAEP38570 1179 aa13.6□□□□□ -0.23
HOXA1-201ENST00000343060 SIN3AQ96ST3 1273 aa13.59□□□□□ -0.23
HOXA1-201ENST00000343060 PRDM2Q13029 1718 aa13.58□□□□□ -0.24
HOXA1-201ENST00000343060 CFTRP13569 1480 aa13.57□□□□□ -0.24
HOXA1-201ENST00000343060 FHAD1B1AJZ9 1412 aa13.57□□□□□ -0.24
HOXA1-201ENST00000343060 PCF11O94913 1555 aaKnown RBP13.57□□□□□ -0.24
HOXA1-201ENST00000343060 TRIM52Q96A61 297 aa13.56□□□□□ -0.24
HOXA1-201ENST00000343060 NCAPD3P42695 1498 aa13.56□□□□□ -0.24
HOXA1-201ENST00000343060 IGF1RP08069 1367 aa13.55□□□□□ -0.24
HOXA1-201ENST00000343060 ERICH6BQ5W0A0 696 aa13.53□□□□□ -0.24
HOXA1-201ENST00000343060 KDM5BQ9UGL1 1544 aa13.51□□□□□ -0.25
HOXA1-201ENST00000343060 FYCO1Q9BQS8 1478 aa13.51□□□□□ -0.25
HOXA1-201ENST00000343060 MYT1LQ9UL68 1186 aa13.51□□□□□ -0.25
HOXA1-201ENST00000343060 AQRO60306 1485 aaKnown RBP eCLIP13.5□□□□□ -0.25
HOXA1-201ENST00000343060 CDK11AQ9UQ88 783 aaPredicted RBP13.48□□□□□ -0.25
HOXA1-201ENST00000343060 UACAQ9BZF9 1416 aa13.48□□□□□ -0.25
HOXA1-201ENST00000343060 CARMIL1Q5VZK9 1371 aa13.48□□□□□ -0.25
HOXA1-201ENST00000343060 FAM50AQ14320 339 aaKnown RBP13.47□□□□□ -0.25
HOXA1-201ENST00000343060 EFCAB5A4FU69 1503 aa13.47□□□□□ -0.25
HOXA1-201ENST00000343060 TONSLQ96HA7 1378 aa13.47□□□□□ -0.25
HOXA1-201ENST00000343060 CCDC18Q5T9S5 1454 aa13.47□□□□□ -0.25
HOXA1-201ENST00000343060 FGD5Q6ZNL6 1462 aa13.47□□□□□ -0.25
HOXA1-201ENST00000343060 HFM1A2PYH4 1435 aa13.46□□□□□ -0.25
HOXA1-201ENST00000343060 CASKIN1Q8WXD9 1431 aa13.46□□□□□ -0.25
HOXA1-201ENST00000343060 PTPN23Q9H3S7 1636 aa13.46□□□□□ -0.25
HOXA1-201ENST00000343060 HIRIP3Q9BW71 556 aaPredicted RBP13.45□□□□□ -0.26
HOXA1-201ENST00000343060 NCOA2Q15596 1464 aa13.45□□□□□ -0.26
HOXA1-201ENST00000343060 FGD6Q6ZV73 1430 aa13.44□□□□□ -0.26
HOXA1-201ENST00000343060 HNRNPUQ00839 825 aaKnown RBP eCLIP13.41□□□□□ -0.26
HOXA1-201ENST00000343060 PPP4R2Q9NY27 417 aa13.41□□□□□ -0.26
HOXA1-201ENST00000343060 ERICH6Q7L0X2 663 aa13.41□□□□□ -0.26
HOXA1-201ENST00000343060 PTPRKQ15262 1439 aa13.38□□□□□ -0.27
HOXA1-201ENST00000343060 NAIPQ13075 1403 aa13.38□□□□□ -0.27
HOXA1-201ENST00000343060 FHOD3Q2V2M9 1422 aa13.37□□□□□ -0.27
HOXA1-201ENST00000343060 SNAPC4Q5SXM2 1469 aa13.37□□□□□ -0.27
HOXA1-201ENST00000343060 CNTLNQ9NXG0 1405 aa13.37□□□□□ -0.27
HOXA1-201ENST00000343060 CTTNBP2Q8WZ74 1663 aa13.36□□□□□ -0.27
HOXA1-201ENST00000343060 HECW1Q76N89 1606 aa13.36□□□□□ -0.27
HOXA1-201ENST00000343060 WASHC2AQ641Q2 1341 aa13.35□□□□□ -0.27
HOXA1-201ENST00000343060 CC2D2AQ9P2K1 1620 aa13.34□□□□□ -0.27
HOXA1-201ENST00000343060 IRX6P78412 446 aaPredicted RBP13.34□□□□□ -0.27
HOXA1-201ENST00000343060 GCC2Q8IWJ2 1684 aa13.34□□□□□ -0.27
HOXA1-201ENST00000343060 THOC2Q8NI27 1593 aaKnown RBP13.33□□□□□ -0.27
HOXA1-201ENST00000343060 FMN1Q68DA7 1419 aa13.33□□□□□ -0.28
HOXA1-201ENST00000343060 CUL7Q14999 1698 aa13.33□□□□□ -0.28
HOXA1-201ENST00000343060 ZBED9Q6R2W3 1325 aa13.32□□□□□ -0.28
HOXA1-201ENST00000343060 ABCA5Q8WWZ7 1642 aa13.32□□□□□ -0.28
HOXA1-201ENST00000343060 MYOM3Q5VTT5 1437 aa13.31□□□□□ -0.28
HOXA1-201ENST00000343060 LRRIQ1Q96JM4 1722 aa13.31□□□□□ -0.28
HOXA1-201ENST00000343060 DENND4BO75064 1496 aaPredicted RBP13.31□□□□□ -0.28
HOXA1-201ENST00000343060 DEKP35659 375 aaKnown RBP13.31□□□□□ -0.28
HOXA1-201ENST00000343060 NCOA1Q15788 1441 aa13.31□□□□□ -0.28
HOXA1-201ENST00000343060 AKNAQ7Z591 1439 aa13.31□□□□□ -0.28
HOXA1-201ENST00000343060 POLR1AO95602 1720 aaPredicted RBP13.3□□□□□ -0.28
HOXA1-201ENST00000343060 HSPA5P11021 654 aaKnown RBP13.3□□□□□ -0.28
HOXA1-201ENST00000343060 ARHGEF11O15085 1522 aa13.3□□□□□ -0.28
HOXA1-201ENST00000343060 ABCA10Q8WWZ4 1543 aa13.29□□□□□ -0.28
HOXA1-201ENST00000343060 SAMD9Q5K651 1589 aa13.29□□□□□ -0.28
HOXA1-201ENST00000343060 SUPT6HQ7KZ85 1726 aaKnown RBP13.29□□□□□ -0.28
HOXA1-201ENST00000343060 CADPSQ9ULU8 1353 aa13.29□□□□□ -0.28
HOXA1-201ENST00000343060 EHBP1L1Q8N3D4 1523 aa13.29□□□□□ -0.28
HOXA1-201ENST00000343060 TCOF1Q13428 1488 aaKnown RBP13.27□□□□□ -0.28
HOXA1-201ENST00000343060 NOP58Q9Y2X3 529 aaKnown RBP13.27□□□□□ -0.29
HOXA1-201ENST00000343060 GRIN2BQ13224 1484 aa13.26□□□□□ -0.29
HOXA1-201ENST00000343060 UGGT2Q9NYU1 1516 aa13.26□□□□□ -0.29
HOXA1-201ENST00000343060 MTUS2Q5JR59 1369 aa13.26□□□□□ -0.29
HOXA1-201ENST00000343060 CCDC7Q96M83 1385 aa13.26□□□□□ -0.29
HOXA1-201ENST00000343060 PRKRIP1Q9H875 184 aaPredicted RBP13.26□□□□□ -0.29
HOXA1-201ENST00000343060 EIF4G2P78344 907 aaKnown RBP eCLIP13.25□□□□□ -0.29
HOXA1-201ENST00000343060 CCDC184Q52MB2 194 aa13.25□□□□□ -0.29
HOXA1-201ENST00000343060 P3H3Q8IVL6 736 aa13.25□□□□□ -0.29
HOXA1-201ENST00000343060 KIF21AQ7Z4S6 1674 aa13.25□□□□□ -0.29
HOXA1-201ENST00000343060 DNMBPQ6XZF7 1577 aa13.24□□□□□ -0.29
HOXA1-201ENST00000343060 SMG6Q86US8 1419 aaKnown RBP13.24□□□□□ -0.29
HOXA1-201ENST00000343060 B4GALNT3Q6L9W6 998 aa13.23□□□□□ -0.29
HOXA1-201ENST00000343060 RNF123Q5XPI4 1314 aa13.23□□□□□ -0.29
HOXA1-201ENST00000343060 ATP1B4Q9UN42 357 aaPredicted RBP13.21□□□□□ -0.29
HOXA1-201ENST00000343060 SPATA31E1Q6ZUB1 1445 aa13.2□□□□□ -0.3
HOXA1-201ENST00000343060 KDM6BO15054 1643 aa13.19□□□□□ -0.3
HOXA1-201ENST00000343060 TEX14Q8IWB6 1497 aa13.19□□□□□ -0.3
HOXA1-201ENST00000343060 PAK3O75914 559 aaPredicted RBP13.18□□□□□ -0.3
HOXA1-201ENST00000343060 MRS2Q9HD23 443 aa13.18□□□□□ -0.3
HOXA1-201ENST00000343060 POLA1P09884 1462 aaPredicted RBP13.18□□□□□ -0.3
HOXA1-201ENST00000343060 C11orf95C9JLR9 678 aaPredicted RBP13.17□□□□□ -0.3
HOXA1-201ENST00000343060 MAGI3Q5TCQ9 1506 aa13.17□□□□□ -0.3
HOXA1-201ENST00000343060 FANCD2Q9BXW9 1451 aa13.17□□□□□ -0.3
HOXA1-201ENST00000343060 RAD54L2Q9Y4B4 1467 aa13.17□□□□□ -0.3
HOXA1-201ENST00000343060 RPRD2Q5VT52 1461 aaKnown RBP13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms