RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 P3H3Q8IVL6 736 aa32.28■■■□□ 2.76
TRIM28-202ENST00000341753 RRBP1Q9P2E9 1410 aaKnown RBP32.22■■■□□ 2.75
TRIM28-202ENST00000341753 BCANQ96GW7 911 aa32.18■■■□□ 2.74
TRIM28-202ENST00000341753 CCNB3Q8WWL7 1395 aa32.18■■■□□ 2.74
TRIM28-202ENST00000341753 TOPBP1Q92547 1522 aa32.16■■■□□ 2.74
TRIM28-202ENST00000341753 POLA1P09884 1462 aaPredicted RBP32.16■■■□□ 2.74
TRIM28-202ENST00000341753 ATP1B4Q9UN42 357 aaPredicted RBP32.13■■■□□ 2.73
TRIM28-202ENST00000341753 DNMBPQ6XZF7 1577 aa32.12■■■□□ 2.73
TRIM28-202ENST00000341753 RAB3GAP2Q9H2M9 1393 aa32.06■■■□□ 2.72
TRIM28-202ENST00000341753 ABCA10Q8WWZ4 1543 aa32.02■■■□□ 2.72
TRIM28-202ENST00000341753 DDX10Q13206 875 aaKnown RBP32.01■■■□□ 2.71
TRIM28-202ENST00000341753 URB2Q14146 1524 aaKnown RBP32■■■□□ 2.71
TRIM28-202ENST00000341753 TDRD9Q8NDG6 1382 aaKnown RBP31.97■■■□□ 2.71
TRIM28-202ENST00000341753 MAPKBP1O60336 1514 aa31.97■■■□□ 2.71
TRIM28-202ENST00000341753 FHOD3Q2V2M9 1422 aa31.97■■■□□ 2.71
TRIM28-202ENST00000341753 FKBP8Q14318 412 aa31.97■■■□□ 2.71
TRIM28-202ENST00000341753 ANP32EQ9BTT0 268 aa31.96■■■□□ 2.71
TRIM28-202ENST00000341753 SIN3AQ96ST3 1273 aa31.96■■■□□ 2.71
TRIM28-202ENST00000341753 TIAM1Q13009 1591 aa31.93■■■□□ 2.7
TRIM28-202ENST00000341753 HIRIP3Q9BW71 556 aaPredicted RBP31.91■■■□□ 2.7
TRIM28-202ENST00000341753 LAMC3Q9Y6N6 1575 aa31.87■■■□□ 2.69
TRIM28-202ENST00000341753 PCF11O94913 1555 aaKnown RBP31.85■■■□□ 2.69
TRIM28-202ENST00000341753 PHLDB1Q86UU1 1377 aa31.85■■■□□ 2.69
TRIM28-202ENST00000341753 LRRC9Q6ZRR7 1453 aa31.85■■■□□ 2.69
TRIM28-202ENST00000341753 WDR97A6NE52 1622 aa31.84■■■□□ 2.69
TRIM28-202ENST00000341753 FAM50AQ14320 339 aaKnown RBP31.84■■■□□ 2.69
TRIM28-202ENST00000341753 SETD5Q9C0A6 1442 aa31.8■■■□□ 2.68
TRIM28-202ENST00000341753 FHAD1B1AJZ9 1412 aa31.8■■■□□ 2.68
TRIM28-202ENST00000341753 TRIM52Q96A61 297 aa31.77■■■□□ 2.68
TRIM28-202ENST00000341753 PDS5BQ9NTI5 1447 aa31.76■■■□□ 2.68
TRIM28-202ENST00000341753 KIF21AQ7Z4S6 1674 aa31.73■■■□□ 2.67
TRIM28-202ENST00000341753 CUL7Q14999 1698 aa31.72■■■□□ 2.67
TRIM28-202ENST00000341753 PPP1R15AO75807 674 aaPredicted RBP31.72■■■□□ 2.67
TRIM28-202ENST00000341753 MAP3K1Q13233 1512 aa31.72■■■□□ 2.67
TRIM28-202ENST00000341753 GAPVD1Q14C86 1478 aa31.71■■■□□ 2.67
TRIM28-202ENST00000341753 NEFLP07196 543 aa31.66■■■□□ 2.66
TRIM28-202ENST00000341753 CTTNBP2Q8WZ74 1663 aa31.65■■■□□ 2.66
TRIM28-202ENST00000341753 ABCA5Q8WWZ7 1642 aa31.64■■■□□ 2.66
TRIM28-202ENST00000341753 CFAP43Q8NDM7 1665 aa31.63■■■□□ 2.65
TRIM28-202ENST00000341753 CASKIN1Q8WXD9 1431 aa31.6■■■□□ 2.65
TRIM28-202ENST00000341753 EFCAB5A4FU69 1503 aa31.6■■■□□ 2.65
TRIM28-202ENST00000341753 RBM19Q9Y4C8 960 aaKnown RBP31.6■■■□□ 2.65
TRIM28-202ENST00000341753 FYCO1Q9BQS8 1478 aa31.59■■■□□ 2.65
TRIM28-202ENST00000341753 ANP32CO43423 234 aa31.58■■■□□ 2.65
TRIM28-202ENST00000341753 AQRO60306 1485 aaKnown RBP eCLIP31.52■■■□□ 2.644e-10■■■■■ 36.7
TRIM28-202ENST00000341753 FMN1Q68DA7 1419 aa31.5■■■□□ 2.63
TRIM28-202ENST00000341753 SNAPC4Q5SXM2 1469 aa31.49■■■□□ 2.63
TRIM28-202ENST00000341753 CCER2I3L3R5 266 aa31.48■■■□□ 2.63
TRIM28-202ENST00000341753 TARBP1Q13395 1621 aaKnown RBP31.48■■■□□ 2.63
TRIM28-202ENST00000341753 MTUS2Q5JR59 1369 aa31.46■■■□□ 2.63
TRIM28-202ENST00000341753 BCL11AQ9H165 835 aa31.44■■■□□ 2.62
TRIM28-202ENST00000341753 ARID3CA6NKF2 412 aa31.43■■■□□ 2.62
TRIM28-202ENST00000341753 TIMELESSQ9UNS1 1208 aa31.41■■■□□ 2.62
TRIM28-202ENST00000341753 SAMD9Q5K651 1589 aa31.4■■■□□ 2.62
TRIM28-202ENST00000341753 LRRIQ1Q96JM4 1722 aa31.38■■■□□ 2.61
TRIM28-202ENST00000341753 IRX6P78412 446 aaPredicted RBP31.36■■■□□ 2.61
TRIM28-202ENST00000341753 TONSLQ96HA7 1378 aa31.36■■■□□ 2.61
TRIM28-202ENST00000341753 FGD6Q6ZV73 1430 aa31.34■■■□□ 2.61
TRIM28-202ENST00000341753 GRIN2BQ13224 1484 aa31.31■■■□□ 2.6
TRIM28-202ENST00000341753 MRC2Q9UBG0 1479 aa31.3■■■□□ 2.6
TRIM28-202ENST00000341753 ZNF608Q9ULD9 1512 aaPredicted RBP31.29■■■□□ 2.6
TRIM28-202ENST00000341753 PTPRKQ15262 1439 aa31.28■■■□□ 2.6
TRIM28-202ENST00000341753 PBRM1Q86U86 1689 aa31.28■■■□□ 2.6
TRIM28-202ENST00000341753 MSH5O43196 834 aa31.27■■■□□ 2.6
TRIM28-202ENST00000341753 HNRNPUQ00839 825 aaKnown RBP eCLIP31.27■■■□□ 2.6
TRIM28-202ENST00000341753 NCOA2Q15596 1464 aa31.26■■■□□ 2.59
TRIM28-202ENST00000341753 MAGI3Q5TCQ9 1506 aa31.21■■■□□ 2.59
TRIM28-202ENST00000341753 CCDC18Q5T9S5 1454 aa31.19■■■□□ 2.58
TRIM28-202ENST00000341753 ADAMTS12P58397 1594 aa31.18■■■□□ 2.58
TRIM28-202ENST00000341753 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP31.16■■■□□ 2.585e-11■□□□□ 10
TRIM28-202ENST00000341753 CHIC2Q9UKJ5 165 aa31.16■■■□□ 2.58
TRIM28-202ENST00000341753 MYOM3Q5VTT5 1437 aa31.16■■■□□ 2.58
TRIM28-202ENST00000341753 IQGAP2Q13576 1575 aa31.15■■■□□ 2.58
TRIM28-202ENST00000341753 CDK13Q14004 1512 aaKnown RBP31.12■■■□□ 2.57
TRIM28-202ENST00000341753 RRP7BPQ9NSQ0 103 aa31.1■■■□□ 2.57
TRIM28-202ENST00000341753 SUPT6HQ7KZ85 1726 aaKnown RBP31.08■■■□□ 2.57
TRIM28-202ENST00000341753 EHBP1L1Q8N3D4 1523 aa31.08■■■□□ 2.57
TRIM28-202ENST00000341753 UACAQ9BZF9 1416 aa31.07■■■□□ 2.56
TRIM28-202ENST00000341753 CDK11AQ9UQ88 783 aaPredicted RBP31.07■■■□□ 2.56
TRIM28-202ENST00000341753 IFT140Q96RY7 1462 aa31.05■■■□□ 2.56
TRIM28-202ENST00000341753 THOC2Q8NI27 1593 aaKnown RBP31.04■■■□□ 2.56
TRIM28-202ENST00000341753 EPRSP07814 1512 aaKnown RBP31.03■■■□□ 2.56
TRIM28-202ENST00000341753 UGGT2Q9NYU1 1516 aa31.03■■■□□ 2.56
TRIM28-202ENST00000341753 HFM1A2PYH4 1435 aa31.03■■■□□ 2.56
TRIM28-202ENST00000341753 NAIPQ13075 1403 aa31.02■■■□□ 2.56
TRIM28-202ENST00000341753 WASHC2AQ641Q2 1341 aa31.02■■■□□ 2.56
TRIM28-202ENST00000341753 HSPA5P11021 654 aaKnown RBP31.01■■■□□ 2.56
TRIM28-202ENST00000341753 PTPN23Q9H3S7 1636 aa31.01■■■□□ 2.55
TRIM28-202ENST00000341753 CCDC184Q52MB2 194 aa31■■■□□ 2.55
TRIM28-202ENST00000341753 WDR62O43379 1518 aa30.99■■■□□ 2.55
TRIM28-202ENST00000341753 ERCC6Q03468 1493 aa30.99■■■□□ 2.55
TRIM28-202ENST00000341753 FBLN2P98095 1184 aa30.99■■■□□ 2.55
TRIM28-202ENST00000341753 HECW1Q76N89 1606 aa30.98■■■□□ 2.55
TRIM28-202ENST00000341753 ERICH6Q7L0X2 663 aa30.96■■■□□ 2.55
TRIM28-202ENST00000341753 KDM5BQ9UGL1 1544 aa30.95■■■□□ 2.55
TRIM28-202ENST00000341753 ARHGEF11O15085 1522 aa30.95■■■□□ 2.54
TRIM28-202ENST00000341753 FANCIQ9NVI1 1328 aa30.94■■■□□ 2.54
TRIM28-202ENST00000341753 EIF4G3O43432 1585 aaKnown RBP30.91■■■□□ 2.54
TRIM28-202ENST00000341753 DISP1Q96F81 1524 aa30.9■■■□□ 2.54
TRIM28-202ENST00000341753 FAM9BQ8IZU0 186 aa30.88■■■□□ 2.53
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms