RNA–Protein interactions for RNA: ENST00000321356.8

CLK1-201, Transcript of CDC like kinase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK1, Length 1,888 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-201ENST00000321356 MAPKBP1O60336 1514 aa12.71□□□□□ -0.37
CLK1-201ENST00000321356 RAB3GAP2Q9H2M9 1393 aa12.7□□□□□ -0.38
CLK1-201ENST00000321356 FHAD1B1AJZ9 1412 aa12.7□□□□□ -0.38
CLK1-201ENST00000321356 PCF11O94913 1555 aaKnown RBP12.69□□□□□ -0.38
CLK1-201ENST00000321356 FANCD2Q9BXW9 1451 aa12.68□□□□□ -0.38
CLK1-201ENST00000321356 DNMBPQ6XZF7 1577 aa12.68□□□□□ -0.38
CLK1-201ENST00000321356 CC2D2AQ9P2K1 1620 aa12.68□□□□□ -0.38
CLK1-201ENST00000321356 ABCA10Q8WWZ4 1543 aa12.67□□□□□ -0.38
CLK1-201ENST00000321356 PHLDB1Q86UU1 1377 aa12.67□□□□□ -0.38
CLK1-201ENST00000321356 SETD5Q9C0A6 1442 aa12.66□□□□□ -0.38
CLK1-201ENST00000321356 EFCAB5A4FU69 1503 aa12.66□□□□□ -0.38
CLK1-201ENST00000321356 CUL7Q14999 1698 aa12.65□□□□□ -0.39
CLK1-201ENST00000321356 AQRO60306 1485 aaKnown RBP eCLIP12.64□□□□□ -0.399e-8■■■□□ 15.7
CLK1-201ENST00000321356 FYCO1Q9BQS8 1478 aa12.64□□□□□ -0.39
CLK1-201ENST00000321356 CTTNBP2Q8WZ74 1663 aa12.63□□□□□ -0.39
CLK1-201ENST00000321356 TOPBP1Q92547 1522 aa12.63□□□□□ -0.39
CLK1-201ENST00000321356 POLA1P09884 1462 aaPredicted RBP12.63□□□□□ -0.39
CLK1-201ENST00000321356 ITGAEP38570 1179 aa12.61□□□□□ -0.39
CLK1-201ENST00000321356 CASKIN1Q8WXD9 1431 aa12.61□□□□□ -0.39
CLK1-201ENST00000321356 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.61□□□□□ -0.39
CLK1-201ENST00000321356 RAD54L2Q9Y4B4 1467 aa12.6□□□□□ -0.39
CLK1-201ENST00000321356 WDR97A6NE52 1622 aa12.6□□□□□ -0.39
CLK1-201ENST00000321356 FHOD3Q2V2M9 1422 aa12.59□□□□□ -0.39
CLK1-201ENST00000321356 SNAPC4Q5SXM2 1469 aa12.56□□□□□ -0.4
CLK1-201ENST00000321356 TIMELESSQ9UNS1 1208 aa12.55□□□□□ -0.4
CLK1-201ENST00000321356 FMN1Q68DA7 1419 aa12.54□□□□□ -0.4
CLK1-201ENST00000321356 NESP48681 1621 aa12.54□□□□□ -0.4
CLK1-201ENST00000321356 SAMD9Q5K651 1589 aa12.53□□□□□ -0.4
CLK1-201ENST00000321356 ABCA5Q8WWZ7 1642 aa12.53□□□□□ -0.4
CLK1-201ENST00000321356 FAM50AQ14320 339 aaKnown RBP12.53□□□□□ -0.4
CLK1-201ENST00000321356 LAMC3Q9Y6N6 1575 aa12.53□□□□□ -0.4
CLK1-201ENST00000321356 P3H3Q8IVL6 736 aa12.53□□□□□ -0.4
CLK1-201ENST00000321356 FGD6Q6ZV73 1430 aa12.52□□□□□ -0.41
CLK1-201ENST00000321356 URB2Q14146 1524 aaKnown RBP12.51□□□□□ -0.41
CLK1-201ENST00000321356 LRRIQ1Q96JM4 1722 aa12.5□□□□□ -0.41
CLK1-201ENST00000321356 THOC2Q8NI27 1593 aaKnown RBP12.5□□□□□ -0.41
CLK1-201ENST00000321356 SUPT16HQ9Y5B9 1047 aaKnown RBP12.5□□□□□ -0.41
CLK1-201ENST00000321356 SIN3AQ96ST3 1273 aa12.49□□□□□ -0.41
CLK1-201ENST00000321356 GRIN2BQ13224 1484 aa12.47□□□□□ -0.41
CLK1-201ENST00000321356 MYT1Q01538 1121 aa12.47□□□□□ -0.41
CLK1-201ENST00000321356 HFM1A2PYH4 1435 aa12.47□□□□□ -0.41
CLK1-201ENST00000321356 KIF21AQ7Z4S6 1674 aa12.46□□□□□ -0.41
CLK1-201ENST00000321356 PTPN23Q9H3S7 1636 aa12.46□□□□□ -0.42
CLK1-201ENST00000321356 ATP1B4Q9UN42 357 aaPredicted RBP12.46□□□□□ -0.42
CLK1-201ENST00000321356 PPP1R15AO75807 674 aaPredicted RBP12.45□□□□□ -0.42
CLK1-201ENST00000321356 CCDC18Q5T9S5 1454 aa12.45□□□□□ -0.42
CLK1-201ENST00000321356 GAPVD1Q14C86 1478 aa12.44□□□□□ -0.42
CLK1-201ENST00000321356 PTPRKQ15262 1439 aa12.44□□□□□ -0.42
CLK1-201ENST00000321356 UACAQ9BZF9 1416 aa12.44□□□□□ -0.42
CLK1-201ENST00000321356 SUPT6HQ7KZ85 1726 aaKnown RBP12.43□□□□□ -0.42
CLK1-201ENST00000321356 MTUS2Q5JR59 1369 aa12.43□□□□□ -0.42
CLK1-201ENST00000321356 EHBP1L1Q8N3D4 1523 aa12.43□□□□□ -0.42
CLK1-201ENST00000321356 NCOA2Q15596 1464 aa12.43□□□□□ -0.42
CLK1-201ENST00000321356 KCNH8Q96L42 1107 aa12.43□□□□□ -0.42
CLK1-201ENST00000321356 MYOM3Q5VTT5 1437 aa12.43□□□□□ -0.42
CLK1-201ENST00000321356 ARHGEF11O15085 1522 aa12.43□□□□□ -0.42
CLK1-201ENST00000321356 NAIPQ13075 1403 aa12.41□□□□□ -0.42
CLK1-201ENST00000321356 UGGT2Q9NYU1 1516 aa12.41□□□□□ -0.42
CLK1-201ENST00000321356 TDRD9Q8NDG6 1382 aaKnown RBP12.41□□□□□ -0.42
CLK1-201ENST00000321356 TARBP1Q13395 1621 aaKnown RBP12.4□□□□□ -0.42
CLK1-201ENST00000321356 DDX10Q13206 875 aaKnown RBP12.4□□□□□ -0.42
CLK1-201ENST00000321356 PDS5BQ9NTI5 1447 aa12.39□□□□□ -0.43
CLK1-201ENST00000321356 KDM5BQ9UGL1 1544 aa12.38□□□□□ -0.43
CLK1-201ENST00000321356 MAGI3Q5TCQ9 1506 aa12.38□□□□□ -0.43
CLK1-201ENST00000321356 CCER2I3L3R5 266 aa12.37□□□□□ -0.43
CLK1-201ENST00000321356 TCOF1Q13428 1488 aaKnown RBP12.37□□□□□ -0.43
CLK1-201ENST00000321356 GCC2Q8IWJ2 1684 aa12.37□□□□□ -0.43
CLK1-201ENST00000321356 TONSLQ96HA7 1378 aa12.37□□□□□ -0.43
CLK1-201ENST00000321356 PBRM1Q86U86 1689 aa12.35□□□□□ -0.43
CLK1-201ENST00000321356 HECW1Q76N89 1606 aa12.35□□□□□ -0.43
CLK1-201ENST00000321356 AKNAQ7Z591 1439 aa12.34□□□□□ -0.43
CLK1-201ENST00000321356 IQGAP2Q13576 1575 aa12.33□□□□□ -0.44
CLK1-201ENST00000321356 ADAMTS12P58397 1594 aa12.31□□□□□ -0.44
CLK1-201ENST00000321356 DENND4BO75064 1496 aaPredicted RBP12.31□□□□□ -0.44
CLK1-201ENST00000321356 ANP32CO43423 234 aa12.3□□□□□ -0.44
CLK1-201ENST00000321356 HIRIP3Q9BW71 556 aaPredicted RBP12.3□□□□□ -0.44
CLK1-201ENST00000321356 TSHZ2Q9NRE2 1034 aa12.3□□□□□ -0.44
CLK1-201ENST00000321356 EPRSP07814 1512 aaKnown RBP12.3□□□□□ -0.44
CLK1-201ENST00000321356 WDR62O43379 1518 aa12.29□□□□□ -0.44
CLK1-201ENST00000321356 MIA2Q96PC5 1412 aa12.29□□□□□ -0.44
CLK1-201ENST00000321356 PLPPR3Q6T4P5 718 aa12.27□□□□□ -0.44
CLK1-201ENST00000321356 KDM6BO15054 1643 aa12.27□□□□□ -0.44
CLK1-201ENST00000321356 CDK13Q14004 1512 aaKnown RBP12.25□□□□□ -0.45
CLK1-201ENST00000321356 DNAJC5BQ9UF47 199 aa12.24□□□□□ -0.45
CLK1-201ENST00000321356 FKBP8Q14318 412 aa12.23□□□□□ -0.45
CLK1-201ENST00000321356 MRC2Q9UBG0 1479 aa12.22□□□□□ -0.45
CLK1-201ENST00000321356 RRP7BPQ9NSQ0 103 aa12.22□□□□□ -0.45
CLK1-201ENST00000321356 ROCK1Q13464 1354 aa12.21□□□□□ -0.46
CLK1-201ENST00000321356 TRIM52Q96A61 297 aa12.21□□□□□ -0.46
CLK1-201ENST00000321356 DNMT1P26358 1616 aaKnown RBP12.2□□□□□ -0.46
CLK1-201ENST00000321356 CHIC2Q9UKJ5 165 aa12.19□□□□□ -0.46
CLK1-201ENST00000321356 KIAA0556O60303 1618 aa12.19□□□□□ -0.46
CLK1-201ENST00000321356 WASHC2AQ641Q2 1341 aa12.19□□□□□ -0.46
CLK1-201ENST00000321356 DISP1Q96F81 1524 aa12.18□□□□□ -0.46
CLK1-201ENST00000321356 DAPK1P53355 1430 aa12.18□□□□□ -0.46
CLK1-201ENST00000321356 NEFLP07196 543 aa12.18□□□□□ -0.46
CLK1-201ENST00000321356 HSPA5P11021 654 aaKnown RBP12.18□□□□□ -0.46
CLK1-201ENST00000321356 MPHOSPH9Q99550 1183 aa12.18□□□□□ -0.46
CLK1-201ENST00000321356 KIAA0586Q9BVV6 1533 aa12.17□□□□□ -0.46
CLK1-201ENST00000321356 BCANQ96GW7 911 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms