RNA–Protein interactions for RNA: ENST00000321117.9

DNMT3A-202, Transcript of DNA methyltransferase 3 alpha, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene DNMT3A, Length 4,279 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DNMT3A-202ENST00000321117 CHIC2Q9UKJ5 165 aa17.49■□□□□ 0.39
DNMT3A-202ENST00000321117 CCER2I3L3R5 266 aa17.48■□□□□ 0.39
DNMT3A-202ENST00000321117 ARID3CA6NKF2 412 aa17.47■□□□□ 0.39
DNMT3A-202ENST00000321117 ATAD2BQ9ULI0 1458 aa17.47■□□□□ 0.39
DNMT3A-202ENST00000321117 DAXXQ9UER7 740 aaPredicted RBP17.46■□□□□ 0.39
DNMT3A-202ENST00000321117 MRS2Q9HD23 443 aa17.45■□□□□ 0.38
DNMT3A-202ENST00000321117 FHAD1B1AJZ9 1412 aa17.45■□□□□ 0.38
DNMT3A-202ENST00000321117 EIF4G2P78344 907 aaKnown RBP eCLIP17.44■□□□□ 0.38
DNMT3A-202ENST00000321117 RBM19Q9Y4C8 960 aaKnown RBP17.44■□□□□ 0.38
DNMT3A-202ENST00000321117 CUX2O14529 1486 aa17.44■□□□□ 0.38
DNMT3A-202ENST00000321117 CARMIL1Q5VZK9 1371 aa17.43■□□□□ 0.38
DNMT3A-202ENST00000321117 ANP32AP39687 249 aaKnown RBP17.41■□□□□ 0.38
DNMT3A-202ENST00000321117 SYNJ1O43426 1573 aa17.41■□□□□ 0.38
DNMT3A-202ENST00000321117 RRP7BPQ9NSQ0 103 aa17.41■□□□□ 0.38
DNMT3A-202ENST00000321117 PPP1R15AO75807 674 aaPredicted RBP17.38■□□□□ 0.37
DNMT3A-202ENST00000321117 MYT1LQ9UL68 1186 aa17.38■□□□□ 0.37
DNMT3A-202ENST00000321117 CCDC136Q96JN2 1154 aa17.33■□□□□ 0.36
DNMT3A-202ENST00000321117 ARHGAP35Q9NRY4 1499 aa17.33■□□□□ 0.36
DNMT3A-202ENST00000321117 EIF4G1Q04637 1599 aaKnown RBP17.32■□□□□ 0.36
DNMT3A-202ENST00000321117 PPP4R2Q9NY27 417 aa17.31■□□□□ 0.36
DNMT3A-202ENST00000321117 BCL11AQ9H165 835 aa17.3■□□□□ 0.36
DNMT3A-202ENST00000321117 RRBP1Q9P2E9 1410 aaKnown RBP17.29■□□□□ 0.36
DNMT3A-202ENST00000321117 NBR1Q14596 966 aa17.28■□□□□ 0.36
DNMT3A-202ENST00000321117 ARAP1Q96P48 1450 aa17.28■□□□□ 0.36
DNMT3A-202ENST00000321117 NPM2Q86SE8 214 aaKnown RBP17.27■□□□□ 0.35
DNMT3A-202ENST00000321117 ZNF777Q9ULD5 760 aaPredicted RBP17.27■□□□□ 0.35
DNMT3A-202ENST00000321117 TMC1Q8TDI8 760 aa17.26■□□□□ 0.35
DNMT3A-202ENST00000321117 ERICH3Q5RHP9 1530 aa17.26■□□□□ 0.35
DNMT3A-202ENST00000321117 SLC4A1APQ9BWU0 796 aaKnown RBP17.23■□□□□ 0.35
DNMT3A-202ENST00000321117 HSPA5P11021 654 aaKnown RBP17.22■□□□□ 0.35
DNMT3A-202ENST00000321117 ZBTB47Q9UFB7 747 aaPredicted RBP17.22■□□□□ 0.35
DNMT3A-202ENST00000321117 PRXQ9BXM0 1461 aa17.22■□□□□ 0.35
DNMT3A-202ENST00000321117 B4GALNT3Q6L9W6 998 aa17.22■□□□□ 0.35
DNMT3A-202ENST00000321117 FHOD3Q2V2M9 1422 aa17.18■□□□□ 0.34
DNMT3A-202ENST00000321117 SALL2Q9Y467 1007 aaPredicted RBP17.18■□□□□ 0.34
DNMT3A-202ENST00000321117 ERICH6BQ5W0A0 696 aa17.17■□□□□ 0.34
DNMT3A-202ENST00000321117 TOP2BQ02880 1626 aa17.17■□□□□ 0.34
DNMT3A-202ENST00000321117 PHLDB1Q86UU1 1377 aa17.16■□□□□ 0.34
DNMT3A-202ENST00000321117 IGF1RP08069 1367 aa17.15■□□□□ 0.34
DNMT3A-202ENST00000321117 FMN1Q68DA7 1419 aa17.14■□□□□ 0.33
DNMT3A-202ENST00000321117 SENP3-EIF4A1A0A087X0R7 540 aa17.13■□□□□ 0.33
DNMT3A-202ENST00000321117 LRRC9Q6ZRR7 1453 aa17.12■□□□□ 0.33
DNMT3A-202ENST00000321117 FBLN2P98095 1184 aa17.12■□□□□ 0.33
DNMT3A-202ENST00000321117 NOP58Q9Y2X3 529 aaKnown RBP17.1■□□□□ 0.33
DNMT3A-202ENST00000321117 KDM2AQ9Y2K7 1162 aa17.09■□□□□ 0.33
DNMT3A-202ENST00000321117 CADPSQ9ULU8 1353 aa17.08■□□□□ 0.32
DNMT3A-202ENST00000321117 CCDC18Q5T9S5 1454 aa17.07■□□□□ 0.32
DNMT3A-202ENST00000321117 FOXD1Q16676 465 aa17.06■□□□□ 0.32
DNMT3A-202ENST00000321117 MPHOSPH9Q99550 1183 aa17.05■□□□□ 0.32
DNMT3A-202ENST00000321117 L3MBTL2Q969R5 705 aa17.04■□□□□ 0.32
DNMT3A-202ENST00000321117 WDR97A6NE52 1622 aa17.04■□□□□ 0.32
DNMT3A-202ENST00000321117 CUX1P39880 1505 aa17.01■□□□□ 0.31
DNMT3A-202ENST00000321117 FANCIQ9NVI1 1328 aa17.01■□□□□ 0.31
DNMT3A-202ENST00000321117 DEKP35659 375 aaKnown RBP17.01■□□□□ 0.31
DNMT3A-202ENST00000321117 TIAM1Q13009 1591 aa17■□□□□ 0.31
DNMT3A-202ENST00000321117 NCAPD3P42695 1498 aa17■□□□□ 0.31
DNMT3A-202ENST00000321117 TSPY4P0CV99 314 aa17■□□□□ 0.31
DNMT3A-202ENST00000321117 TSPY10P0CW01 314 aa17■□□□□ 0.31
DNMT3A-202ENST00000321117 FGD6Q6ZV73 1430 aa17■□□□□ 0.31
DNMT3A-202ENST00000321117 FGD5Q6ZNL6 1462 aa16.99■□□□□ 0.31
DNMT3A-202ENST00000321117 PEG3Q9GZU2 1588 aa16.99■□□□□ 0.31
DNMT3A-202ENST00000321117 CFDP1Q9UEE9 299 aaPredicted RBP16.99■□□□□ 0.31
DNMT3A-202ENST00000321117 CARD11Q9BXL7 1154 aa16.99■□□□□ 0.31
DNMT3A-202ENST00000321117 UACAQ9BZF9 1416 aa16.98■□□□□ 0.31
DNMT3A-202ENST00000321117 PRKRIP1Q9H875 184 aaPredicted RBP16.98■□□□□ 0.31
DNMT3A-202ENST00000321117 BICRAQ9NZM4 1560 aa16.97■□□□□ 0.31
DNMT3A-202ENST00000321117 TDRD9Q8NDG6 1382 aaKnown RBP16.96■□□□□ 0.31
DNMT3A-202ENST00000321117 CFTRP13569 1480 aa16.95■□□□□ 0.3
DNMT3A-202ENST00000321117 CANXP27824 592 aaKnown RBP16.93■□□□□ 0.3
DNMT3A-202ENST00000321117 ZBED9Q6R2W3 1325 aa16.93■□□□□ 0.3
DNMT3A-202ENST00000321117 UNC13AQ9UPW8 1703 aa16.92■□□□□ 0.3
DNMT3A-202ENST00000321117 CASKIN1Q8WXD9 1431 aa16.91■□□□□ 0.3
DNMT3A-202ENST00000321117 NUDCQ9Y266 331 aa16.91■□□□□ 0.3
DNMT3A-202ENST00000321117 WASHC2AQ641Q2 1341 aa16.9■□□□□ 0.3
DNMT3A-202ENST00000321117 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.89■□□□□ 0.296e-7■■□□□ 13.3
DNMT3A-202ENST00000321117 FYCO1Q9BQS8 1478 aa16.88■□□□□ 0.29
DNMT3A-202ENST00000321117 MYOM3Q5VTT5 1437 aa16.88■□□□□ 0.29
DNMT3A-202ENST00000321117 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.88■□□□□ 0.29
DNMT3A-202ENST00000321117 FANCD2Q9BXW9 1451 aa16.88■□□□□ 0.29
DNMT3A-202ENST00000321117 WDR43Q15061 677 aaKnown RBP eCLIP16.87■□□□□ 0.29
DNMT3A-202ENST00000321117 LAS1LQ9Y4W2 734 aaKnown RBP16.87■□□□□ 0.29
DNMT3A-202ENST00000321117 DDRGK1Q96HY6 314 aa16.87■□□□□ 0.29
DNMT3A-202ENST00000321117 BIVM-ERCC5R4GMW8 1640 aa16.87■□□□□ 0.29
DNMT3A-202ENST00000321117 RGL3Q3MIN7 710 aa16.86■□□□□ 0.29
DNMT3A-202ENST00000321117 MAPKBP1O60336 1514 aa16.86■□□□□ 0.29
DNMT3A-202ENST00000321117 MAP3K1Q13233 1512 aa16.86■□□□□ 0.29
DNMT3A-202ENST00000321117 PKD2Q13563 968 aa16.85■□□□□ 0.29
DNMT3A-202ENST00000321117 CNTLNQ9NXG0 1405 aa16.85■□□□□ 0.29
DNMT3A-202ENST00000321117 PPM1GO15355 546 aaPredicted RBP16.85■□□□□ 0.29
DNMT3A-202ENST00000321117 NEFMP07197 916 aa16.85■□□□□ 0.29
DNMT3A-202ENST00000321117 RAD54L2Q9Y4B4 1467 aa16.85■□□□□ 0.29
DNMT3A-202ENST00000321117 PLEKHD1A6NEE1 506 aa16.84■□□□□ 0.29
DNMT3A-202ENST00000321117 CCDC7Q96M83 1385 aa16.84■□□□□ 0.29
DNMT3A-202ENST00000321117 CHMP7Q8WUX9 453 aaPredicted RBP16.84■□□□□ 0.29
DNMT3A-202ENST00000321117 IPO9Q96P70 1041 aaKnown RBP16.84■□□□□ 0.29
DNMT3A-202ENST00000321117 HMGXB3Q12766 1538 aa16.83■□□□□ 0.29
DNMT3A-202ENST00000321117 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.83■□□□□ 0.285e-6■■□□□ 11.5
DNMT3A-202ENST00000321117 HFM1A2PYH4 1435 aa16.83■□□□□ 0.28
DNMT3A-202ENST00000321117 NCOA2Q15596 1464 aa16.82■□□□□ 0.28
DNMT3A-202ENST00000321117 DCAF11Q8TEB1 546 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms