RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 TOP2BQ02880 1626 aa14.88□□□□□ -0.03
COL3A1-202ENST00000317840 TRIM52Q96A61 297 aa14.88□□□□□ -0.03
COL3A1-202ENST00000317840 ANP32CO43423 234 aa14.87□□□□□ -0.03
COL3A1-202ENST00000317840 CC2D2AQ9P2K1 1620 aa14.84□□□□□ -0.03
COL3A1-202ENST00000317840 FANCD2Q9BXW9 1451 aa14.83□□□□□ -0.04
COL3A1-202ENST00000317840 ERICH3Q5RHP9 1530 aa14.83□□□□□ -0.04
COL3A1-202ENST00000317840 RRBP1Q9P2E9 1410 aaKnown RBP14.82□□□□□ -0.04
COL3A1-202ENST00000317840 CHMP7Q8WUX9 453 aaPredicted RBP14.81□□□□□ -0.04
COL3A1-202ENST00000317840 RAD54L2Q9Y4B4 1467 aa14.81□□□□□ -0.04
COL3A1-202ENST00000317840 CHIC2Q9UKJ5 165 aa14.81□□□□□ -0.04
COL3A1-202ENST00000317840 SETD5Q9C0A6 1442 aa14.81□□□□□ -0.04
COL3A1-202ENST00000317840 ARHGAP35Q9NRY4 1499 aa14.8□□□□□ -0.04
COL3A1-202ENST00000317840 ZNF777Q9ULD5 760 aaPredicted RBP14.79□□□□□ -0.04
COL3A1-202ENST00000317840 CUX1P39880 1505 aa14.79□□□□□ -0.04
COL3A1-202ENST00000317840 TONSLQ96HA7 1378 aa14.78□□□□□ -0.04
COL3A1-202ENST00000317840 CFTRP13569 1480 aa14.78□□□□□ -0.04
COL3A1-202ENST00000317840 IGF1RP08069 1367 aa14.77□□□□□ -0.05
COL3A1-202ENST00000317840 FGD5Q6ZNL6 1462 aa14.76□□□□□ -0.05
COL3A1-202ENST00000317840 CNGB1Q14028 1251 aaPredicted RBP14.76□□□□□ -0.05
COL3A1-202ENST00000317840 TSHZ2Q9NRE2 1034 aa14.76□□□□□ -0.05
COL3A1-202ENST00000317840 ERCC6Q03468 1493 aa14.75□□□□□ -0.05
COL3A1-202ENST00000317840 PDS5BQ9NTI5 1447 aa14.74□□□□□ -0.05
COL3A1-202ENST00000317840 MYT1LQ9UL68 1186 aa14.73□□□□□ -0.05
COL3A1-202ENST00000317840 PHLDB1Q86UU1 1377 aa14.72□□□□□ -0.05
COL3A1-202ENST00000317840 FHAD1B1AJZ9 1412 aa14.72□□□□□ -0.05
COL3A1-202ENST00000317840 MTUS2Q5JR59 1369 aa14.72□□□□□ -0.05
COL3A1-202ENST00000317840 HMGXB3Q12766 1538 aa14.71□□□□□ -0.05
COL3A1-202ENST00000317840 PPP1R15AO75807 674 aaPredicted RBP14.69□□□□□ -0.06
COL3A1-202ENST00000317840 HNRNPUQ00839 825 aaKnown RBP eCLIP14.69□□□□□ -0.06
COL3A1-202ENST00000317840 POLR3GLQ9BT43 218 aa14.68□□□□□ -0.06
COL3A1-202ENST00000317840 FHOD3Q2V2M9 1422 aa14.68□□□□□ -0.06
COL3A1-202ENST00000317840 BIVM-ERCC5R4GMW8 1640 aa14.68□□□□□ -0.06
COL3A1-202ENST00000317840 RRP7BPQ9NSQ0 103 aa14.66□□□□□ -0.06
COL3A1-202ENST00000317840 LRRC9Q6ZRR7 1453 aa14.66□□□□□ -0.06
COL3A1-202ENST00000317840 IRX6P78412 446 aaPredicted RBP14.66□□□□□ -0.06
COL3A1-202ENST00000317840 ERICH6Q7L0X2 663 aa14.65□□□□□ -0.06
COL3A1-202ENST00000317840 TIMELESSQ9UNS1 1208 aa14.65□□□□□ -0.06
COL3A1-202ENST00000317840 ANP32EQ9BTT0 268 aa14.62□□□□□ -0.07
COL3A1-202ENST00000317840 ZNF326Q5BKZ1 582 aaKnown RBP14.61□□□□□ -0.07
COL3A1-202ENST00000317840 TIAM1Q13009 1591 aa14.6□□□□□ -0.07
COL3A1-202ENST00000317840 WDR97A6NE52 1622 aa14.6□□□□□ -0.07
COL3A1-202ENST00000317840 CCER2I3L3R5 266 aa14.6□□□□□ -0.07
COL3A1-202ENST00000317840 AQRO60306 1485 aaKnown RBP eCLIP14.59□□□□□ -0.07
COL3A1-202ENST00000317840 CDK11AQ9UQ88 783 aaPredicted RBP14.58□□□□□ -0.07
COL3A1-202ENST00000317840 MAPKBP1O60336 1514 aa14.57□□□□□ -0.08
COL3A1-202ENST00000317840 FAM9BQ8IZU0 186 aa14.56□□□□□ -0.08
COL3A1-202ENST00000317840 RBM19Q9Y4C8 960 aaKnown RBP14.55□□□□□ -0.08
COL3A1-202ENST00000317840 POLA1P09884 1462 aaPredicted RBP14.54□□□□□ -0.08
COL3A1-202ENST00000317840 TOPBP1Q92547 1522 aa14.54□□□□□ -0.08
COL3A1-202ENST00000317840 EIF4G2P78344 907 aaKnown RBP eCLIP14.52□□□□□ -0.08
COL3A1-202ENST00000317840 GAPVD1Q14C86 1478 aa14.52□□□□□ -0.09
COL3A1-202ENST00000317840 FMN1Q68DA7 1419 aa14.5□□□□□ -0.09
COL3A1-202ENST00000317840 FOXD1Q16676 465 aa14.5□□□□□ -0.09
COL3A1-202ENST00000317840 HSPA5P11021 654 aaKnown RBP14.49□□□□□ -0.09
COL3A1-202ENST00000317840 CCDC18Q5T9S5 1454 aa14.49□□□□□ -0.09
COL3A1-202ENST00000317840 FGD6Q6ZV73 1430 aa14.48□□□□□ -0.09
COL3A1-202ENST00000317840 MRS2Q9HD23 443 aa14.48□□□□□ -0.09
COL3A1-202ENST00000317840 PCF11O94913 1555 aaKnown RBP14.47□□□□□ -0.09
COL3A1-202ENST00000317840 MAP3K1Q13233 1512 aa14.46□□□□□ -0.09
COL3A1-202ENST00000317840 CASKIN1Q8WXD9 1431 aa14.45□□□□□ -0.1
COL3A1-202ENST00000317840 PLEKHD1A6NEE1 506 aa14.45□□□□□ -0.1
COL3A1-202ENST00000317840 CFDP1Q9UEE9 299 aaPredicted RBP14.44□□□□□ -0.1
COL3A1-202ENST00000317840 SENP3-EIF4A1A0A087X0R7 540 aa14.43□□□□□ -0.1
COL3A1-202ENST00000317840 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.43□□□□□ -0.1
COL3A1-202ENST00000317840 FYCO1Q9BQS8 1478 aa14.43□□□□□ -0.1
COL3A1-202ENST00000317840 UACAQ9BZF9 1416 aa14.42□□□□□ -0.1
COL3A1-202ENST00000317840 JPH4Q96JJ6 628 aa14.42□□□□□ -0.1
COL3A1-202ENST00000317840 SLC4A1APQ9BWU0 796 aaKnown RBP14.41□□□□□ -0.1
COL3A1-202ENST00000317840 URB2Q14146 1524 aaKnown RBP14.41□□□□□ -0.1
COL3A1-202ENST00000317840 L3MBTL2Q969R5 705 aa14.41□□□□□ -0.1
COL3A1-202ENST00000317840 MPHOSPH9Q99550 1183 aa14.4□□□□□ -0.1
COL3A1-202ENST00000317840 WASHC2AQ641Q2 1341 aa14.38□□□□□ -0.11
COL3A1-202ENST00000317840 DNMBPQ6XZF7 1577 aa14.38□□□□□ -0.11
COL3A1-202ENST00000317840 B4GALNT3Q6L9W6 998 aa14.37□□□□□ -0.11
COL3A1-202ENST00000317840 HFM1A2PYH4 1435 aa14.37□□□□□ -0.11
COL3A1-202ENST00000317840 MYOM3Q5VTT5 1437 aa14.37□□□□□ -0.11
COL3A1-202ENST00000317840 NCOA2Q15596 1464 aa14.37□□□□□ -0.11
COL3A1-202ENST00000317840 TSPY4P0CV99 314 aa14.36□□□□□ -0.11
COL3A1-202ENST00000317840 TSPY10P0CW01 314 aa14.36□□□□□ -0.11
COL3A1-202ENST00000317840 PTPRKQ15262 1439 aa14.35□□□□□ -0.11
COL3A1-202ENST00000317840 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.35□□□□□ -0.11
COL3A1-202ENST00000317840 KDM2AQ9Y2K7 1162 aa14.35□□□□□ -0.11
COL3A1-202ENST00000317840 NAIPQ13075 1403 aa14.34□□□□□ -0.11
COL3A1-202ENST00000317840 EFCAB5A4FU69 1503 aa14.34□□□□□ -0.11
COL3A1-202ENST00000317840 CCDC184Q52MB2 194 aa14.33□□□□□ -0.12
COL3A1-202ENST00000317840 PPP4R2Q9NY27 417 aa14.33□□□□□ -0.12
COL3A1-202ENST00000317840 ABCA10Q8WWZ4 1543 aa14.32□□□□□ -0.12
COL3A1-202ENST00000317840 ZNF644Q9H582 1327 aaPredicted RBP14.31□□□□□ -0.12
COL3A1-202ENST00000317840 PRKRIP1Q9H875 184 aaPredicted RBP14.31□□□□□ -0.12
COL3A1-202ENST00000317840 LAMC3Q9Y6N6 1575 aa14.3□□□□□ -0.12
COL3A1-202ENST00000317840 MRC2Q9UBG0 1479 aa14.3□□□□□ -0.12
COL3A1-202ENST00000317840 ZNF608Q9ULD9 1512 aaPredicted RBP14.3□□□□□ -0.12
COL3A1-202ENST00000317840 SENP3Q9H4L4 574 aaPredicted RBP14.27□□□□□ -0.12
COL3A1-202ENST00000317840 CFAP43Q8NDM7 1665 aa14.27□□□□□ -0.13
COL3A1-202ENST00000317840 SALL2Q9Y467 1007 aaPredicted RBP14.27□□□□□ -0.13
COL3A1-202ENST00000317840 TMC1Q8TDI8 760 aa14.26□□□□□ -0.13
COL3A1-202ENST00000317840 CCDC136Q96JN2 1154 aa14.26□□□□□ -0.13
COL3A1-202ENST00000317840 C11orf95C9JLR9 678 aaPredicted RBP14.26□□□□□ -0.13
COL3A1-202ENST00000317840 RGL3Q3MIN7 710 aa14.26□□□□□ -0.13
COL3A1-202ENST00000317840 BCL11AQ9H165 835 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms