RNA–Protein interactions for RNA: ENST00000317716.13

CDHR3-201, Transcript of cadherin related family member 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CDHR3, Length 3,813 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDHR3-201ENST00000317716 RUSC2Q8N2Y8 1516 aa10.57□□□□□ -0.72
CDHR3-201ENST00000317716 NPM2Q86SE8 214 aaKnown RBP10.56□□□□□ -0.72
CDHR3-201ENST00000317716 HNRNPUQ00839 825 aaKnown RBP eCLIP10.56□□□□□ -0.72
CDHR3-201ENST00000317716 KCNH8Q96L42 1107 aa10.55□□□□□ -0.72
CDHR3-201ENST00000317716 RTN4Q9NQC3 1192 aaKnown RBP10.55□□□□□ -0.72
CDHR3-201ENST00000317716 EIF5BO60841 1220 aaKnown RBP10.54□□□□□ -0.72
CDHR3-201ENST00000317716 AQRO60306 1485 aaKnown RBP eCLIP10.53□□□□□ -0.72
CDHR3-201ENST00000317716 RBM19Q9Y4C8 960 aaKnown RBP10.52□□□□□ -0.72
CDHR3-201ENST00000317716 FGD5Q6ZNL6 1462 aa10.51□□□□□ -0.73
CDHR3-201ENST00000317716 CLSPNQ9HAW4 1339 aa10.49□□□□□ -0.73
CDHR3-201ENST00000317716 DAXXQ9UER7 740 aaPredicted RBP10.48□□□□□ -0.73
CDHR3-201ENST00000317716 CEP162Q5TB80 1403 aa10.48□□□□□ -0.73
CDHR3-201ENST00000317716 SYNJ1O43426 1573 aa10.47□□□□□ -0.73
CDHR3-201ENST00000317716 FAM9BQ8IZU0 186 aa10.47□□□□□ -0.73
CDHR3-201ENST00000317716 KIF27Q86VH2 1401 aa10.47□□□□□ -0.73
CDHR3-201ENST00000317716 CUX1P39880 1505 aa10.46□□□□□ -0.74
CDHR3-201ENST00000317716 TOPBP1Q92547 1522 aa10.45□□□□□ -0.74
CDHR3-201ENST00000317716 LAMC3Q9Y6N6 1575 aa10.45□□□□□ -0.74
CDHR3-201ENST00000317716 URB2Q14146 1524 aaKnown RBP10.45□□□□□ -0.74
CDHR3-201ENST00000317716 KIF21AQ7Z4S6 1674 aa10.45□□□□□ -0.74
CDHR3-201ENST00000317716 MRC2Q9UBG0 1479 aa10.44□□□□□ -0.74
CDHR3-201ENST00000317716 POLA1P09884 1462 aaPredicted RBP10.42□□□□□ -0.74
CDHR3-201ENST00000317716 CARMIL1Q5VZK9 1371 aa10.42□□□□□ -0.74
CDHR3-201ENST00000317716 ZNF608Q9ULD9 1512 aaPredicted RBP10.42□□□□□ -0.74
CDHR3-201ENST00000317716 ZNF326Q5BKZ1 582 aaKnown RBP10.41□□□□□ -0.74
CDHR3-201ENST00000317716 ANP32AP39687 249 aaKnown RBP10.41□□□□□ -0.74
CDHR3-201ENST00000317716 SALL2Q9Y467 1007 aaPredicted RBP10.41□□□□□ -0.74
CDHR3-201ENST00000317716 DEKP35659 375 aaKnown RBP10.4□□□□□ -0.74
CDHR3-201ENST00000317716 SIN3AQ96ST3 1273 aa10.4□□□□□ -0.75
CDHR3-201ENST00000317716 B4GALNT3Q6L9W6 998 aa10.38□□□□□ -0.75
CDHR3-201ENST00000317716 MYT1LQ9UL68 1186 aa10.37□□□□□ -0.75
CDHR3-201ENST00000317716 CCDC136Q96JN2 1154 aa10.37□□□□□ -0.75
CDHR3-201ENST00000317716 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.37□□□□□ -0.75
CDHR3-201ENST00000317716 GAPVD1Q14C86 1478 aa10.36□□□□□ -0.75
CDHR3-201ENST00000317716 CYB5RLQ6IPT4 315 aa10.35□□□□□ -0.75
CDHR3-201ENST00000317716 ARXQ96QS3 562 aa10.35□□□□□ -0.75
CDHR3-201ENST00000317716 ZBTB47Q9UFB7 747 aaPredicted RBP10.34□□□□□ -0.75
CDHR3-201ENST00000317716 IGF1RP08069 1367 aa10.34□□□□□ -0.75
CDHR3-201ENST00000317716 RAPGEF2Q9Y4G8 1499 aa10.33□□□□□ -0.76
CDHR3-201ENST00000317716 CLIP1P30622 1438 aa10.33□□□□□ -0.76
CDHR3-201ENST00000317716 OSCARQ8IYS5 282 aa10.33□□□□□ -0.76
CDHR3-201ENST00000317716 LAS1LQ9Y4W2 734 aaKnown RBP10.33□□□□□ -0.76
CDHR3-201ENST00000317716 DNMBPQ6XZF7 1577 aa10.32□□□□□ -0.76
CDHR3-201ENST00000317716 ZNF777Q9ULD5 760 aaPredicted RBP10.3□□□□□ -0.76
CDHR3-201ENST00000317716 JPH4Q96JJ6 628 aa10.3□□□□□ -0.76
CDHR3-201ENST00000317716 MRS2Q9HD23 443 aa10.3□□□□□ -0.76
CDHR3-201ENST00000317716 TOP2BQ02880 1626 aa10.29□□□□□ -0.76
CDHR3-201ENST00000317716 TONSLQ96HA7 1378 aa10.28□□□□□ -0.76
CDHR3-201ENST00000317716 SNAPC4Q5SXM2 1469 aa10.28□□□□□ -0.76
CDHR3-201ENST00000317716 GOLGA3Q08378 1498 aa10.27□□□□□ -0.77
CDHR3-201ENST00000317716 TRHP20396 242 aaPredicted RBP10.27□□□□□ -0.77
CDHR3-201ENST00000317716 IFT140Q96RY7 1462 aa10.27□□□□□ -0.77
CDHR3-201ENST00000317716 NPM1P06748 294 aaKnown RBP eCLIP10.26□□□□□ -0.77
CDHR3-201ENST00000317716 NOP58Q9Y2X3 529 aaKnown RBP10.26□□□□□ -0.77
CDHR3-201ENST00000317716 TNIKQ9UKE5 1360 aa10.26□□□□□ -0.77
CDHR3-201ENST00000317716 KANK4Q5T7N3 995 aaPredicted RBP10.24□□□□□ -0.77
CDHR3-201ENST00000317716 CHIC2Q9UKJ5 165 aa10.24□□□□□ -0.77
CDHR3-201ENST00000317716 GRIN2BQ13224 1484 aa10.23□□□□□ -0.77
CDHR3-201ENST00000317716 EEA1Q15075 1411 aa10.23□□□□□ -0.77
CDHR3-201ENST00000317716 ANO8Q9HCE9 1232 aaPredicted RBP10.23□□□□□ -0.77
CDHR3-201ENST00000317716 FHOD3Q2V2M9 1422 aa10.22□□□□□ -0.77
CDHR3-201ENST00000317716 PLPPR3Q6T4P5 718 aa10.22□□□□□ -0.77
CDHR3-201ENST00000317716 NEFMP07197 916 aa10.2□□□□□ -0.78
CDHR3-201ENST00000317716 PPP4R2Q9NY27 417 aa10.19□□□□□ -0.78
CDHR3-201ENST00000317716 PRKCSHP14314 528 aaPredicted RBP10.19□□□□□ -0.78
CDHR3-201ENST00000317716 ABCA10Q8WWZ4 1543 aa10.19□□□□□ -0.78
CDHR3-201ENST00000317716 MSH5O43196 834 aa10.18□□□□□ -0.78
CDHR3-201ENST00000317716 WDR62O43379 1518 aa10.17□□□□□ -0.78
CDHR3-201ENST00000317716 FHAD1B1AJZ9 1412 aa10.16□□□□□ -0.78
CDHR3-201ENST00000317716 THOC2Q8NI27 1593 aaKnown RBP10.15□□□□□ -0.78
CDHR3-201ENST00000317716 BIVM-ERCC5R4GMW8 1640 aa10.15□□□□□ -0.79
CDHR3-201ENST00000317716 RRP7BPQ9NSQ0 103 aa10.14□□□□□ -0.79
CDHR3-201ENST00000317716 EIF4G3O43432 1585 aaKnown RBP10.14□□□□□ -0.79
CDHR3-201ENST00000317716 DHX57Q6P158 1386 aaKnown RBP10.14□□□□□ -0.79
CDHR3-201ENST00000317716 TMC1Q8TDI8 760 aa10.13□□□□□ -0.79
CDHR3-201ENST00000317716 PRDM2Q13029 1718 aa10.13□□□□□ -0.79
CDHR3-201ENST00000317716 PLEKHD1A6NEE1 506 aa10.12□□□□□ -0.79
CDHR3-201ENST00000317716 PRG4Q92954 1404 aaPredicted RBP10.12□□□□□ -0.79
CDHR3-201ENST00000317716 MTUS2Q5JR59 1369 aa10.12□□□□□ -0.79
CDHR3-201ENST00000317716 SLC4A1APQ9BWU0 796 aaKnown RBP10.11□□□□□ -0.79
CDHR3-201ENST00000317716 IL27Q8NEV9 243 aa10.1□□□□□ -0.79
CDHR3-201ENST00000317716 PTPRGP23470 1445 aa10.1□□□□□ -0.79
CDHR3-201ENST00000317716 CARMIL2Q6F5E8 1435 aa10.1□□□□□ -0.79
CDHR3-201ENST00000317716 PAK3O75914 559 aaPredicted RBP10.09□□□□□ -0.79
CDHR3-201ENST00000317716 EIF4G2P78344 907 aaKnown RBP eCLIP10.09□□□□□ -0.79
CDHR3-201ENST00000317716 GRIN2AQ12879 1464 aa10.08□□□□□ -0.8
CDHR3-201ENST00000317716 SYNJ2O15056 1496 aa10.08□□□□□ -0.8
CDHR3-201ENST00000317716 PRXQ9BXM0 1461 aa10.08□□□□□ -0.8
CDHR3-201ENST00000317716 ARID4BQ4LE39 1312 aaPredicted RBP10.07□□□□□ -0.8
CDHR3-201ENST00000317716 CCNB3Q8WWL7 1395 aa10.07□□□□□ -0.8
CDHR3-201ENST00000317716 RAB3GAP2Q9H2M9 1393 aa10.07□□□□□ -0.8
CDHR3-201ENST00000317716 TARBP1Q13395 1621 aaKnown RBP10.07□□□□□ -0.8
CDHR3-201ENST00000317716 SENP3Q9H4L4 574 aaPredicted RBP10.07□□□□□ -0.8
CDHR3-201ENST00000317716 CCER2I3L3R5 266 aa10.07□□□□□ -0.8
CDHR3-201ENST00000317716 VPS8Q8N3P4 1428 aa10.06□□□□□ -0.8
CDHR3-201ENST00000317716 KDM2AQ9Y2K7 1162 aa10.05□□□□□ -0.8
CDHR3-201ENST00000317716 SLC4A3P48751 1232 aa10.05□□□□□ -0.8
CDHR3-201ENST00000317716 FOXD1Q16676 465 aa10.05□□□□□ -0.8
CDHR3-201ENST00000317716 CANXP27824 592 aaKnown RBP10.04□□□□□ -0.8
CDHR3-201ENST00000317716 FANCIQ9NVI1 1328 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms