RNA–Protein interactions for RNA: ENST00000308177.4

PCDHGC3-201, Transcript of protocadherin gamma subfamily C, 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PCDHGC3, Length 4,725 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGC3-201ENST00000308177 KANK4Q5T7N3 995 aaPredicted RBP15.75■□□□□ 0.11
PCDHGC3-201ENST00000308177 TDRD9Q8NDG6 1382 aaKnown RBP15.75■□□□□ 0.11
PCDHGC3-201ENST00000308177 CFDP1Q9UEE9 299 aaPredicted RBP15.73■□□□□ 0.11
PCDHGC3-201ENST00000308177 RAPGEF2Q9Y4G8 1499 aa15.73■□□□□ 0.11
PCDHGC3-201ENST00000308177 CLSPNQ9HAW4 1339 aa15.73■□□□□ 0.11
PCDHGC3-201ENST00000308177 HIRIP3Q9BW71 556 aaPredicted RBP15.72■□□□□ 0.11
PCDHGC3-201ENST00000308177 EIF4G1Q04637 1599 aaKnown RBP15.7■□□□□ 0.1
PCDHGC3-201ENST00000308177 KCNH8Q96L42 1107 aa15.7■□□□□ 0.1
PCDHGC3-201ENST00000308177 DAXXQ9UER7 740 aaPredicted RBP15.7■□□□□ 0.1
PCDHGC3-201ENST00000308177 KDM2AQ9Y2K7 1162 aa15.67■□□□□ 0.1
PCDHGC3-201ENST00000308177 CHGAP10645 457 aaKnown RBP15.66■□□□□ 0.1
PCDHGC3-201ENST00000308177 EIF4G2P78344 907 aaKnown RBP eCLIP15.66■□□□□ 0.1
PCDHGC3-201ENST00000308177 SIN3AQ96ST3 1273 aa15.66■□□□□ 0.1
PCDHGC3-201ENST00000308177 HNRNPUQ00839 825 aaKnown RBP eCLIP15.65■□□□□ 0.1
PCDHGC3-201ENST00000308177 NCAPD3P42695 1498 aa15.65■□□□□ 0.1
PCDHGC3-201ENST00000308177 FANCD2Q9BXW9 1451 aa15.62■□□□□ 0.09
PCDHGC3-201ENST00000308177 FAM9BQ8IZU0 186 aa15.62■□□□□ 0.09
PCDHGC3-201ENST00000308177 FMN1Q68DA7 1419 aa15.61■□□□□ 0.09
PCDHGC3-201ENST00000308177 ARHGAP35Q9NRY4 1499 aa15.59■□□□□ 0.09
PCDHGC3-201ENST00000308177 SETD5Q9C0A6 1442 aa15.58■□□□□ 0.08
PCDHGC3-201ENST00000308177 FKBP8Q14318 412 aa15.57■□□□□ 0.08
PCDHGC3-201ENST00000308177 ESF1Q9H501 851 aaKnown RBP15.56■□□□□ 0.08
PCDHGC3-201ENST00000308177 FHOD3Q2V2M9 1422 aa15.55■□□□□ 0.08
PCDHGC3-201ENST00000308177 MRS2Q9HD23 443 aa15.55■□□□□ 0.08
PCDHGC3-201ENST00000308177 TMC1Q8TDI8 760 aa15.54■□□□□ 0.08
PCDHGC3-201ENST00000308177 STAG3Q9UJ98 1225 aa15.54■□□□□ 0.08
PCDHGC3-201ENST00000308177 SCAF1Q9H7N4 1312 aaKnown RBP15.53■□□□□ 0.08
PCDHGC3-201ENST00000308177 TIMELESSQ9UNS1 1208 aa15.53■□□□□ 0.08
PCDHGC3-201ENST00000308177 IGF1RP08069 1367 aa15.52■□□□□ 0.07
PCDHGC3-201ENST00000308177 RGL3Q3MIN7 710 aa15.51■□□□□ 0.07
PCDHGC3-201ENST00000308177 RAB3GAP2Q9H2M9 1393 aa15.51■□□□□ 0.07
PCDHGC3-201ENST00000308177 FGD5Q6ZNL6 1462 aa15.5■□□□□ 0.07
PCDHGC3-201ENST00000308177 CARMIL2Q6F5E8 1435 aa15.5■□□□□ 0.07
PCDHGC3-201ENST00000308177 NEFMP07197 916 aa15.47■□□□□ 0.07
PCDHGC3-201ENST00000308177 CANXP27824 592 aaKnown RBP15.46■□□□□ 0.07
PCDHGC3-201ENST00000308177 SALL2Q9Y467 1007 aaPredicted RBP15.45■□□□□ 0.06
PCDHGC3-201ENST00000308177 CFTRP13569 1480 aa15.44■□□□□ 0.06
PCDHGC3-201ENST00000308177 CARD11Q9BXL7 1154 aa15.43■□□□□ 0.06
PCDHGC3-201ENST00000308177 SYNJ1O43426 1573 aa15.43■□□□□ 0.06
PCDHGC3-201ENST00000308177 RAD54L2Q9Y4B4 1467 aa15.43■□□□□ 0.06
PCDHGC3-201ENST00000308177 BICRAQ9NZM4 1560 aa15.4■□□□□ 0.06
PCDHGC3-201ENST00000308177 RTL5Q5HYW3 569 aaPredicted RBP15.38■□□□□ 0.05
PCDHGC3-201ENST00000308177 JPH4Q96JJ6 628 aa15.38■□□□□ 0.05
PCDHGC3-201ENST00000308177 GAPVD1Q14C86 1478 aa15.38■□□□□ 0.05
PCDHGC3-201ENST00000308177 HMGXB3Q12766 1538 aa15.38■□□□□ 0.05
PCDHGC3-201ENST00000308177 WDR43Q15061 677 aaKnown RBP eCLIP15.36■□□□□ 0.05
PCDHGC3-201ENST00000308177 KIF21BO75037 1637 aa15.36■□□□□ 0.05
PCDHGC3-201ENST00000308177 FOXD1Q16676 465 aa15.35■□□□□ 0.05
PCDHGC3-201ENST00000308177 MPHOSPH9Q99550 1183 aa15.35■□□□□ 0.05
PCDHGC3-201ENST00000308177 PLPPR3Q6T4P5 718 aa15.35■□□□□ 0.05
PCDHGC3-201ENST00000308177 PKD2Q13563 968 aa15.34■□□□□ 0.05
PCDHGC3-201ENST00000308177 DHX57Q6P158 1386 aaKnown RBP15.34■□□□□ 0.05
PCDHGC3-201ENST00000308177 DCAF11Q8TEB1 546 aa15.32■□□□□ 0.04
PCDHGC3-201ENST00000308177 CCDC18Q5T9S5 1454 aa15.32■□□□□ 0.04
PCDHGC3-201ENST00000308177 PPP1R15AO75807 674 aaPredicted RBP15.32■□□□□ 0.04
PCDHGC3-201ENST00000308177 ZBTB47Q9UFB7 747 aaPredicted RBP15.31■□□□□ 0.04
PCDHGC3-201ENST00000308177 ERICH3Q5RHP9 1530 aa15.31■□□□□ 0.04
PCDHGC3-201ENST00000308177 TOP2BQ02880 1626 aa15.3■□□□□ 0.04
PCDHGC3-201ENST00000308177 IRX6P78412 446 aaPredicted RBP15.3■□□□□ 0.04
PCDHGC3-201ENST00000308177 CDCA8Q53HL2 280 aa15.3■□□□□ 0.04
PCDHGC3-201ENST00000308177 ANKRD30AQ9BXX3 1397 aa15.29■□□□□ 0.04
PCDHGC3-201ENST00000308177 HSPA5P11021 654 aaKnown RBP15.29■□□□□ 0.04
PCDHGC3-201ENST00000308177 CCDC136Q96JN2 1154 aa15.29■□□□□ 0.04
PCDHGC3-201ENST00000308177 SLC24A1O60721 1099 aa15.28■□□□□ 0.04
PCDHGC3-201ENST00000308177 PRXQ9BXM0 1461 aa15.28■□□□□ 0.04
PCDHGC3-201ENST00000308177 SENP3Q9H4L4 574 aaPredicted RBP15.28■□□□□ 0.04
PCDHGC3-201ENST00000308177 CUX1P39880 1505 aa15.28■□□□□ 0.04
PCDHGC3-201ENST00000308177 CC2D2AQ9P2K1 1620 aa15.27■□□□□ 0.04
PCDHGC3-201ENST00000308177 NESP48681 1621 aa15.27■□□□□ 0.03
PCDHGC3-201ENST00000308177 NUP155O75694 1391 aa15.27■□□□□ 0.03
PCDHGC3-201ENST00000308177 EFCAB2Q5VUJ9 269 aa15.27■□□□□ 0.03
PCDHGC3-201ENST00000308177 ANP32AP39687 249 aaKnown RBP15.26■□□□□ 0.03
PCDHGC3-201ENST00000308177 KNSTRNQ9Y448 316 aa15.26■□□□□ 0.03
PCDHGC3-201ENST00000308177 ARAP1Q96P48 1450 aa15.25■□□□□ 0.03
PCDHGC3-201ENST00000308177 AQRO60306 1485 aaKnown RBP eCLIP15.24■□□□□ 0.03
PCDHGC3-201ENST00000308177 HNRNPMP52272 730 aaKnown RBP eCLIP15.24■□□□□ 0.03
PCDHGC3-201ENST00000308177 CCER2I3L3R5 266 aa15.23■□□□□ 0.03
PCDHGC3-201ENST00000308177 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.23■□□□□ 0.03
PCDHGC3-201ENST00000308177 KANK1Q14678 1352 aa15.22■□□□□ 0.03
PCDHGC3-201ENST00000308177 L3MBTL2Q969R5 705 aa15.22■□□□□ 0.03
PCDHGC3-201ENST00000308177 BCL11AQ9H165 835 aa15.22■□□□□ 0.03
PCDHGC3-201ENST00000308177 SENP3-EIF4A1A0A087X0R7 540 aa15.22■□□□□ 0.03
PCDHGC3-201ENST00000308177 RSPH4AQ5TD94 716 aa15.21■□□□□ 0.03
PCDHGC3-201ENST00000308177 SUPT16HQ9Y5B9 1047 aaKnown RBP15.2■□□□□ 0.02
PCDHGC3-201ENST00000308177 PHLDB1Q86UU1 1377 aa15.2■□□□□ 0.02
PCDHGC3-201ENST00000308177 NPM2Q86SE8 214 aaKnown RBP15.2■□□□□ 0.02
PCDHGC3-201ENST00000308177 LRRC9Q6ZRR7 1453 aa15.2■□□□□ 0.02
PCDHGC3-201ENST00000308177 TOPBP1Q92547 1522 aa15.19■□□□□ 0.02
PCDHGC3-201ENST00000308177 PEG3Q9GZU2 1588 aa15.19■□□□□ 0.02
PCDHGC3-201ENST00000308177 PTPRGP23470 1445 aa15.18■□□□□ 0.02
PCDHGC3-201ENST00000308177 TMF1P82094 1093 aa15.18■□□□□ 0.02
PCDHGC3-201ENST00000308177 POLA1P09884 1462 aaPredicted RBP15.18■□□□□ 0.02
PCDHGC3-201ENST00000308177 CASKIN1Q8WXD9 1431 aa15.17■□□□□ 0.02
PCDHGC3-201ENST00000308177 FGD6Q6ZV73 1430 aa15.17■□□□□ 0.02
PCDHGC3-201ENST00000308177 ARID4BQ4LE39 1312 aaPredicted RBP15.15■□□□□ 0.02
PCDHGC3-201ENST00000308177 GRIN2BQ13224 1484 aa15.15■□□□□ 0.02
PCDHGC3-201ENST00000308177 GGT6Q6P531 493 aa15.14■□□□□ 0.01
PCDHGC3-201ENST00000308177 MYOM3Q5VTT5 1437 aa15.14■□□□□ 0.01
PCDHGC3-201ENST00000308177 UNC13AQ9UPW8 1703 aa15.14■□□□□ 0.01
PCDHGC3-201ENST00000308177 CC2D1BQ5T0F9 858 aaKnown RBP15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms