RNA–Protein interactions for RNA: ENST00000308177.4

PCDHGC3-201, Transcript of protocadherin gamma subfamily C, 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PCDHGC3, Length 4,725 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGC3-201ENST00000308177 NISCHQ9Y2I1 1504 aa21.18■□□□□ 0.98
PCDHGC3-201ENST00000308177 DCAF8L2P0C7V8 631 aa20.3■□□□□ 0.84
PCDHGC3-201ENST00000308177 SUPT5HO00267 1087 aaKnown RBP19.46■□□□□ 0.71
PCDHGC3-201ENST00000308177 SHROOM4Q9ULL8 1493 aa19.43■□□□□ 0.7
PCDHGC3-201ENST00000308177 EHMT2Q96KQ7 1210 aa18.4■□□□□ 0.54
PCDHGC3-201ENST00000308177 FAM9AQ8IZU1 332 aaPredicted RBP18.22■□□□□ 0.51
PCDHGC3-201ENST00000308177 TRIM41Q8WV44 630 aa18.1■□□□□ 0.49
PCDHGC3-201ENST00000308177 PCGF6Q9BYE7 350 aa17.95■□□□□ 0.46
PCDHGC3-201ENST00000308177 APLP2Q06481 763 aa17.91■□□□□ 0.46
PCDHGC3-201ENST00000308177 ABCC9O60706 1549 aa17.82■□□□□ 0.44
PCDHGC3-201ENST00000308177 CHIC1Q5VXU3 224 aa17.81■□□□□ 0.44
PCDHGC3-201ENST00000308177 TTBK1Q5TCY1 1321 aaPredicted RBP17.75■□□□□ 0.43
PCDHGC3-201ENST00000308177 UBTFP17480 764 aaKnown RBP17.67■□□□□ 0.42
PCDHGC3-201ENST00000308177 RANGAP1P46060 587 aaPredicted RBP17.66■□□□□ 0.42
PCDHGC3-201ENST00000308177 ZCCHC6Q5VYS8 1495 aaKnown RBP17.63■□□□□ 0.41
PCDHGC3-201ENST00000308177 CCDC180Q9P1Z9 1646 aa17.57■□□□□ 0.4
PCDHGC3-201ENST00000308177 LOC105371045A0A1W2PR82 267 aa17.57■□□□□ 0.4
PCDHGC3-201ENST00000308177 PABPN1Q86U42 306 aaKnown RBP eCLIP17.48■□□□□ 0.39
PCDHGC3-201ENST00000308177 ZEB1P37275 1124 aaPredicted RBP17.48■□□□□ 0.39
PCDHGC3-201ENST00000308177 CCER1Q8TC90 406 aaPredicted RBP17.43■□□□□ 0.38
PCDHGC3-201ENST00000308177 TRIM26Q12899 539 aaPredicted RBP17.41■□□□□ 0.38
PCDHGC3-201ENST00000308177 PPARGC1BQ86YN6 1023 aaKnown RBP17.41■□□□□ 0.38
PCDHGC3-201ENST00000308177 ATP1B4Q9UN42 357 aaPredicted RBP17.37■□□□□ 0.37
PCDHGC3-201ENST00000308177 SCRIBQ14160 1630 aa17.26■□□□□ 0.35
PCDHGC3-201ENST00000308177 HRCP23327 699 aa17.21■□□□□ 0.35
PCDHGC3-201ENST00000308177 PELP1Q8IZL8 1130 aaKnown RBP16.99■□□□□ 0.31
PCDHGC3-201ENST00000308177 CENPBP07199 599 aaPredicted RBP16.99■□□□□ 0.31
PCDHGC3-201ENST00000308177 HNRNPUL2Q1KMD3 747 aaKnown RBP16.97■□□□□ 0.31
PCDHGC3-201ENST00000308177 ITGAEP38570 1179 aa16.95■□□□□ 0.3
PCDHGC3-201ENST00000308177 DCAF1Q9Y4B6 1507 aa16.93■□□□□ 0.3
PCDHGC3-201ENST00000308177 RB1CC1Q8TDY2 1594 aa16.9■□□□□ 0.3
PCDHGC3-201ENST00000308177 NACADO15069 1562 aa16.89■□□□□ 0.29
PCDHGC3-201ENST00000308177 CSRNP3Q8WYN3 585 aa16.88■□□□□ 0.29
PCDHGC3-201ENST00000308177 RSF1Q96T23 1441 aaPredicted RBP16.87■□□□□ 0.29
PCDHGC3-201ENST00000308177 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.85■□□□□ 0.29
PCDHGC3-201ENST00000308177 YTHDC1Q96MU7 727 aaKnown RBP16.74■□□□□ 0.27
PCDHGC3-201ENST00000308177 MYO15BQ96JP2 1530 aa16.65■□□□□ 0.26
PCDHGC3-201ENST00000308177 FAM50AQ14320 339 aaKnown RBP16.64■□□□□ 0.25
PCDHGC3-201ENST00000308177 CECR2Q9BXF3 1484 aa16.6■□□□□ 0.25
PCDHGC3-201ENST00000308177 BAZ1AQ9NRL2 1556 aaPredicted RBP16.54■□□□□ 0.24
PCDHGC3-201ENST00000308177 P3H3Q8IVL6 736 aa16.53■□□□□ 0.24
PCDHGC3-201ENST00000308177 DIEXFQ68CQ4 756 aaKnown RBP16.53■□□□□ 0.24
PCDHGC3-201ENST00000308177 NEFLP07196 543 aa16.48■□□□□ 0.23
PCDHGC3-201ENST00000308177 MYT1LQ9UL68 1186 aa16.48■□□□□ 0.23
PCDHGC3-201ENST00000308177 FBLN2P98095 1184 aa16.47■□□□□ 0.23
PCDHGC3-201ENST00000308177 BAZ1BQ9UIG0 1483 aaKnown RBP16.45■□□□□ 0.22
PCDHGC3-201ENST00000308177 WRNQ14191 1432 aaPredicted RBP eCLIP16.42■□□□□ 0.22
PCDHGC3-201ENST00000308177 MROH2BQ7Z745 1585 aa16.41■□□□□ 0.22
PCDHGC3-201ENST00000308177 EEA1Q15075 1411 aa16.41■□□□□ 0.22
PCDHGC3-201ENST00000308177 TRIM52Q96A61 297 aa16.41■□□□□ 0.22
PCDHGC3-201ENST00000308177 NEUROD1Q13562 356 aa16.4■□□□□ 0.22
PCDHGC3-201ENST00000308177 POLR3GLQ9BT43 218 aa16.4■□□□□ 0.22
PCDHGC3-201ENST00000308177 CLIP1P30622 1438 aa16.33■□□□□ 0.2
PCDHGC3-201ENST00000308177 ARID3CA6NKF2 412 aa16.33■□□□□ 0.2
PCDHGC3-201ENST00000308177 ZNF316A6NFI3 1004 aaPredicted RBP16.31■□□□□ 0.2
PCDHGC3-201ENST00000308177 GOLGA3Q08378 1498 aa16.3■□□□□ 0.2
PCDHGC3-201ENST00000308177 CEP162Q5TB80 1403 aa16.3■□□□□ 0.2
PCDHGC3-201ENST00000308177 TNIKQ9UKE5 1360 aa16.25■□□□□ 0.19
PCDHGC3-201ENST00000308177 CNGB1Q14028 1251 aaPredicted RBP16.24■□□□□ 0.19
PCDHGC3-201ENST00000308177 CCDC88BA6NC98 1476 aa16.24■□□□□ 0.19
PCDHGC3-201ENST00000308177 CDK11AQ9UQ88 783 aaPredicted RBP16.22■□□□□ 0.19
PCDHGC3-201ENST00000308177 CEP164Q9UPV0 1460 aa16.19■□□□□ 0.18
PCDHGC3-201ENST00000308177 KIF27Q86VH2 1401 aa16.19■□□□□ 0.18
PCDHGC3-201ENST00000308177 ERICH6Q7L0X2 663 aa16.18■□□□□ 0.18
PCDHGC3-201ENST00000308177 WIZO95785 1651 aa16.17■□□□□ 0.18
PCDHGC3-201ENST00000308177 SOGA1O94964 1423 aa16.16■□□□□ 0.18
PCDHGC3-201ENST00000308177 ZNF777Q9ULD5 760 aaPredicted RBP16.14■□□□□ 0.17
PCDHGC3-201ENST00000308177 ZNF326Q5BKZ1 582 aaKnown RBP16.12■□□□□ 0.17
PCDHGC3-201ENST00000308177 SMARCA2P51531 1590 aa16.12■□□□□ 0.17
PCDHGC3-201ENST00000308177 TOP2AP11388 1531 aaKnown RBP16.11■□□□□ 0.17
PCDHGC3-201ENST00000308177 ABCC8Q09428 1581 aa16.11■□□□□ 0.17
PCDHGC3-201ENST00000308177 ANP32CO43423 234 aa16.09■□□□□ 0.17
PCDHGC3-201ENST00000308177 MTUS2Q5JR59 1369 aa16.08■□□□□ 0.16
PCDHGC3-201ENST00000308177 MYT1Q01538 1121 aa16.06■□□□□ 0.16
PCDHGC3-201ENST00000308177 CHMP7Q8WUX9 453 aaPredicted RBP16.04■□□□□ 0.16
PCDHGC3-201ENST00000308177 GTF3C3Q9Y5Q9 886 aa16.02■□□□□ 0.15
PCDHGC3-201ENST00000308177 SMARCA4P51532 1647 aa16.01■□□□□ 0.15
PCDHGC3-201ENST00000308177 CHIC2Q9UKJ5 165 aa16.01■□□□□ 0.15
PCDHGC3-201ENST00000308177 TONSLQ96HA7 1378 aa16.01■□□□□ 0.15
PCDHGC3-201ENST00000308177 ATAD2BQ9ULI0 1458 aa15.99■□□□□ 0.15
PCDHGC3-201ENST00000308177 CUX2O14529 1486 aa15.98■□□□□ 0.15
PCDHGC3-201ENST00000308177 SLC4A1APQ9BWU0 796 aaKnown RBP15.97■□□□□ 0.15
PCDHGC3-201ENST00000308177 CARMIL1Q5VZK9 1371 aa15.95■□□□□ 0.14
PCDHGC3-201ENST00000308177 ACIN1Q9UKV3 1341 aaKnown RBP15.95■□□□□ 0.14
PCDHGC3-201ENST00000308177 VPS8Q8N3P4 1428 aa15.87■□□□□ 0.13
PCDHGC3-201ENST00000308177 DDX10Q13206 875 aaKnown RBP15.86■□□□□ 0.13
PCDHGC3-201ENST00000308177 TSPY4P0CV99 314 aa15.86■□□□□ 0.13
PCDHGC3-201ENST00000308177 TSPY10P0CW01 314 aa15.86■□□□□ 0.13
PCDHGC3-201ENST00000308177 RRP7BPQ9NSQ0 103 aa15.85■□□□□ 0.13
PCDHGC3-201ENST00000308177 CADPSQ9ULU8 1353 aa15.85■□□□□ 0.13
PCDHGC3-201ENST00000308177 FHAD1B1AJZ9 1412 aa15.84■□□□□ 0.13
PCDHGC3-201ENST00000308177 BCANQ96GW7 911 aa15.82■□□□□ 0.12
PCDHGC3-201ENST00000308177 ERCC6Q03468 1493 aa15.81■□□□□ 0.12
PCDHGC3-201ENST00000308177 NPM1P06748 294 aaKnown RBP eCLIP15.8■□□□□ 0.12
PCDHGC3-201ENST00000308177 PLEKHD1A6NEE1 506 aa15.8■□□□□ 0.12
PCDHGC3-201ENST00000308177 PDS5BQ9NTI5 1447 aa15.79■□□□□ 0.12
PCDHGC3-201ENST00000308177 CCNB3Q8WWL7 1395 aa15.79■□□□□ 0.12
PCDHGC3-201ENST00000308177 RUSC2Q8N2Y8 1516 aa15.77■□□□□ 0.11
PCDHGC3-201ENST00000308177 MIER1Q8N108 512 aa15.76■□□□□ 0.11
PCDHGC3-201ENST00000308177 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms