RNA–Protein interactions for RNA: ENST00000307859.4

TRIM40-205, Transcript of tripartite motif containing 40, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TRIM40, Length 1,640 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40-205ENST00000307859 CARMIL1Q5VZK9 1371 aa18.76■□□□□ 0.59
TRIM40-205ENST00000307859 PBRM1Q86U86 1689 aa18.73■□□□□ 0.59
TRIM40-205ENST00000307859 CHMP7Q8WUX9 453 aaPredicted RBP18.73■□□□□ 0.59
TRIM40-205ENST00000307859 GAPVD1Q14C86 1478 aa18.72■□□□□ 0.59
TRIM40-205ENST00000307859 SNAPC4Q5SXM2 1469 aa18.72■□□□□ 0.59
TRIM40-205ENST00000307859 MAGI1Q96QZ7 1491 aaPredicted RBP18.7■□□□□ 0.58
TRIM40-205ENST00000307859 TDRD9Q8NDG6 1382 aaKnown RBP18.7■□□□□ 0.58
TRIM40-205ENST00000307859 TRIM26Q12899 539 aaPredicted RBP18.69■□□□□ 0.58
TRIM40-205ENST00000307859 CTTNBP2Q8WZ74 1663 aa18.68■□□□□ 0.58
TRIM40-205ENST00000307859 PCGF6Q9BYE7 350 aa18.67■□□□□ 0.58
TRIM40-205ENST00000307859 VPS8Q8N3P4 1428 aa18.66■□□□□ 0.58
TRIM40-205ENST00000307859 ILDR1Q86SU0 546 aaPredicted RBP18.65■□□□□ 0.58
TRIM40-205ENST00000307859 SYNJ2O15056 1496 aa18.64■□□□□ 0.58
TRIM40-205ENST00000307859 GRIN2BQ13224 1484 aa18.62■□□□□ 0.57
TRIM40-205ENST00000307859 ARHGAP35Q9NRY4 1499 aa18.59■□□□□ 0.57
TRIM40-205ENST00000307859 ADAMTS12P58397 1594 aa18.58■□□□□ 0.57
TRIM40-205ENST00000307859 FHAD1B1AJZ9 1412 aa18.52■□□□□ 0.56
TRIM40-205ENST00000307859 RANGAP1P46060 587 aaPredicted RBP18.52■□□□□ 0.55
TRIM40-205ENST00000307859 EFCAB5A4FU69 1503 aa18.51■□□□□ 0.55
TRIM40-205ENST00000307859 PPARGC1BQ86YN6 1023 aaKnown RBP18.49■□□□□ 0.55
TRIM40-205ENST00000307859 SAMD9Q5K651 1589 aa18.45■□□□□ 0.54
TRIM40-205ENST00000307859 KDM4FA0A1W2PPD8 638 aa18.44■□□□□ 0.54
TRIM40-205ENST00000307859 KIF13AQ9H1H9 1805 aa18.43■□□□□ 0.54
TRIM40-205ENST00000307859 ERCC6L2Q5T890 1561 aa18.43■□□□□ 0.54
TRIM40-205ENST00000307859 IQGAP2Q13576 1575 aa18.38■□□□□ 0.53
TRIM40-205ENST00000307859 CEP170Q5SW79 1584 aa18.38■□□□□ 0.53
TRIM40-205ENST00000307859 MAP3K1Q13233 1512 aa18.37■□□□□ 0.53
TRIM40-205ENST00000307859 PCF11O94913 1555 aaKnown RBP18.36■□□□□ 0.53
TRIM40-205ENST00000307859 APLP2Q06481 763 aa18.36■□□□□ 0.53
TRIM40-205ENST00000307859 NUP160Q12769 1436 aa18.36■□□□□ 0.53
TRIM40-205ENST00000307859 CFAP43Q8NDM7 1665 aa18.35■□□□□ 0.53
TRIM40-205ENST00000307859 GRIN2AQ12879 1464 aa18.35■□□□□ 0.53
TRIM40-205ENST00000307859 ABCC10Q5T3U5 1492 aa18.34■□□□□ 0.53
TRIM40-205ENST00000307859 FHOD3Q2V2M9 1422 aa18.33■□□□□ 0.52
TRIM40-205ENST00000307859 TIAM1Q13009 1591 aa18.32■□□□□ 0.52
TRIM40-205ENST00000307859 SHROOM2Q13796 1616 aa18.32■□□□□ 0.52
TRIM40-205ENST00000307859 FAM69CQ0P6D2 419 aa18.32■□□□□ 0.52
TRIM40-205ENST00000307859 FYCO1Q9BQS8 1478 aa18.31■□□□□ 0.52
TRIM40-205ENST00000307859 TTBK1Q5TCY1 1321 aaPredicted RBP18.3■□□□□ 0.52
TRIM40-205ENST00000307859 HRCP23327 699 aa18.3■□□□□ 0.52
TRIM40-205ENST00000307859 UGGT2Q9NYU1 1516 aa18.3■□□□□ 0.52
TRIM40-205ENST00000307859 FMN1Q68DA7 1419 aa18.28■□□□□ 0.52
TRIM40-205ENST00000307859 KIAA0586Q9BVV6 1533 aa18.28■□□□□ 0.52
TRIM40-205ENST00000307859 CASKIN1Q8WXD9 1431 aa18.27■□□□□ 0.51
TRIM40-205ENST00000307859 MAPKBP1O60336 1514 aa18.26■□□□□ 0.51
TRIM40-205ENST00000307859 KDM6BO15054 1643 aa18.25■□□□□ 0.51
TRIM40-205ENST00000307859 LRRIQ1Q96JM4 1722 aa18.24■□□□□ 0.51
TRIM40-205ENST00000307859 P3H3Q8IVL6 736 aa18.24■□□□□ 0.51
TRIM40-205ENST00000307859 NPM1P06748 294 aaKnown RBP eCLIP18.23■□□□□ 0.51
TRIM40-205ENST00000307859 DIP2BQ9P265 1576 aa18.22■□□□□ 0.51
TRIM40-205ENST00000307859 KANK4Q5T7N3 995 aaPredicted RBP18.22■□□□□ 0.51
TRIM40-205ENST00000307859 KIAA0556O60303 1618 aa18.2■□□□□ 0.5
TRIM40-205ENST00000307859 PRG4Q92954 1404 aaPredicted RBP18.2■□□□□ 0.5
TRIM40-205ENST00000307859 LRRC9Q6ZRR7 1453 aa18.2■□□□□ 0.5
TRIM40-205ENST00000307859 DISP1Q96F81 1524 aa18.16■□□□□ 0.5
TRIM40-205ENST00000307859 JPH4Q96JJ6 628 aa18.15■□□□□ 0.5
TRIM40-205ENST00000307859 HECW1Q76N89 1606 aa18.14■□□□□ 0.49
TRIM40-205ENST00000307859 RRBP1Q9P2E9 1410 aaKnown RBP18.14■□□□□ 0.49
TRIM40-205ENST00000307859 ADGRL1O94910 1474 aa18.1■□□□□ 0.49
TRIM40-205ENST00000307859 CCDC18Q5T9S5 1454 aa18.09■□□□□ 0.49
TRIM40-205ENST00000307859 HECW2Q9P2P5 1572 aa18.08■□□□□ 0.48
TRIM40-205ENST00000307859 ADCY10Q96PN6 1610 aa18.06■□□□□ 0.48
TRIM40-205ENST00000307859 RAPGEF6Q8TEU7 1601 aa18.05■□□□□ 0.48
TRIM40-205ENST00000307859 EHBP1L1Q8N3D4 1523 aa18.05■□□□□ 0.48
TRIM40-205ENST00000307859 FBXO41Q8TF61 875 aa18.05■□□□□ 0.48
TRIM40-205ENST00000307859 ATP1B4Q9UN42 357 aaPredicted RBP18.04■□□□□ 0.48
TRIM40-205ENST00000307859 SUPT6HQ7KZ85 1726 aaKnown RBP18.03■□□□□ 0.48
TRIM40-205ENST00000307859 CCNB3Q8WWL7 1395 aa18.02■□□□□ 0.48
TRIM40-205ENST00000307859 EPRSP07814 1512 aaKnown RBP18.02■□□□□ 0.48
TRIM40-205ENST00000307859 TSPOAP1O95153 1857 aa18.01■□□□□ 0.47
TRIM40-205ENST00000307859 ZEB1P37275 1124 aaPredicted RBP18.01■□□□□ 0.47
TRIM40-205ENST00000307859 CARMIL2Q6F5E8 1435 aa18.01■□□□□ 0.47
TRIM40-205ENST00000307859 PHLDB1Q86UU1 1377 aa18.01■□□□□ 0.47
TRIM40-205ENST00000307859 MAGI3Q5TCQ9 1506 aa17.99■□□□□ 0.47
TRIM40-205ENST00000307859 MTUS2Q5JR59 1369 aa17.98■□□□□ 0.47
TRIM40-205ENST00000307859 CDK13Q14004 1512 aaKnown RBP17.97■□□□□ 0.47
TRIM40-205ENST00000307859 HNRNPUL2Q1KMD3 747 aaKnown RBP17.96■□□□□ 0.47
TRIM40-205ENST00000307859 NUP153P49790 1475 aaKnown RBP17.96■□□□□ 0.47
TRIM40-205ENST00000307859 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.94■□□□□ 0.46
TRIM40-205ENST00000307859 NCOA2Q15596 1464 aa17.93■□□□□ 0.46
TRIM40-205ENST00000307859 GLI2P10070 1586 aa17.93■□□□□ 0.46
TRIM40-205ENST00000307859 ABCA8O94911 1581 aa17.92■□□□□ 0.46
TRIM40-205ENST00000307859 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.92■□□□□ 0.46
TRIM40-205ENST00000307859 PLB1Q6P1J6 1458 aa17.9■□□□□ 0.46
TRIM40-205ENST00000307859 CCER1Q8TC90 406 aaPredicted RBP17.89■□□□□ 0.45
TRIM40-205ENST00000307859 FGD6Q6ZV73 1430 aa17.89■□□□□ 0.45
TRIM40-205ENST00000307859 PPRC1Q5VV67 1664 aaKnown RBP17.88■□□□□ 0.45
TRIM40-205ENST00000307859 MYOM3Q5VTT5 1437 aa17.87■□□□□ 0.45
TRIM40-205ENST00000307859 COL17A1Q9UMD9 1497 aaPredicted RBP17.86■□□□□ 0.45
TRIM40-205ENST00000307859 ABCC2Q92887 1545 aa17.84■□□□□ 0.45
TRIM40-205ENST00000307859 PTPN23Q9H3S7 1636 aa17.84■□□□□ 0.45
TRIM40-205ENST00000307859 PTPRGP23470 1445 aa17.84■□□□□ 0.45
TRIM40-205ENST00000307859 ASXL2Q76L83 1435 aa17.84■□□□□ 0.45
TRIM40-205ENST00000307859 TEX14Q8IWB6 1497 aa17.81■□□□□ 0.44
TRIM40-205ENST00000307859 TCOF1Q13428 1488 aaKnown RBP17.8■□□□□ 0.44
TRIM40-205ENST00000307859 TROQ12816 1431 aaPredicted RBP17.79■□□□□ 0.44
TRIM40-205ENST00000307859 FAM50AQ14320 339 aaKnown RBP17.78■□□□□ 0.44
TRIM40-205ENST00000307859 ITSN2Q9NZM3 1697 aa17.77■□□□□ 0.44
TRIM40-205ENST00000307859 MIA2Q96PC5 1412 aa17.77■□□□□ 0.43
TRIM40-205ENST00000307859 CDK11AQ9UQ88 783 aaPredicted RBP17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms