RNA–Protein interactions for RNA: ENST00000302206.9

TPM3-202, Transcript of tropomyosin 3, humanhuman

TSL 3 BASIC

Gene TPM3, Length 741 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-202ENST00000302206 CUL7Q14999 1698 aa18.91■□□□□ 0.62
TPM3-202ENST00000302206 TRIM26Q12899 539 aaPredicted RBP18.87■□□□□ 0.61
TPM3-202ENST00000302206 GAPVD1Q14C86 1478 aa18.84■□□□□ 0.61
TPM3-202ENST00000302206 PCGF6Q9BYE7 350 aa18.79■□□□□ 0.6
TPM3-202ENST00000302206 VPS8Q8N3P4 1428 aa18.79■□□□□ 0.6
TPM3-202ENST00000302206 TDRD9Q8NDG6 1382 aaKnown RBP18.79■□□□□ 0.6
TPM3-202ENST00000302206 CLASP1Q7Z460 1538 aa18.79■□□□□ 0.6
TPM3-202ENST00000302206 SNAPC4Q5SXM2 1469 aa18.74■□□□□ 0.59
TPM3-202ENST00000302206 PBRM1Q86U86 1689 aa18.73■□□□□ 0.59
TPM3-202ENST00000302206 CHMP7Q8WUX9 453 aaPredicted RBP18.72■□□□□ 0.59
TPM3-202ENST00000302206 GRIN2BQ13224 1484 aa18.7■□□□□ 0.58
TPM3-202ENST00000302206 ARHGAP35Q9NRY4 1499 aa18.69■□□□□ 0.58
TPM3-202ENST00000302206 CTTNBP2Q8WZ74 1663 aa18.69■□□□□ 0.58
TPM3-202ENST00000302206 MAGI1Q96QZ7 1491 aaPredicted RBP18.68■□□□□ 0.58
TPM3-202ENST00000302206 FHAD1B1AJZ9 1412 aa18.66■□□□□ 0.58
TPM3-202ENST00000302206 ADAMTS12P58397 1594 aa18.64■□□□□ 0.58
TPM3-202ENST00000302206 EFCAB5A4FU69 1503 aa18.64■□□□□ 0.57
TPM3-202ENST00000302206 SYNJ2O15056 1496 aa18.62■□□□□ 0.57
TPM3-202ENST00000302206 RANGAP1P46060 587 aaPredicted RBP18.58■□□□□ 0.56
TPM3-202ENST00000302206 APLP2Q06481 763 aa18.56■□□□□ 0.56
TPM3-202ENST00000302206 PPARGC1BQ86YN6 1023 aaKnown RBP18.54■□□□□ 0.56
TPM3-202ENST00000302206 MAP3K1Q13233 1512 aa18.53■□□□□ 0.56
TPM3-202ENST00000302206 SAMD9Q5K651 1589 aa18.51■□□□□ 0.55
TPM3-202ENST00000302206 IQGAP2Q13576 1575 aa18.47■□□□□ 0.55
TPM3-202ENST00000302206 GRIN2AQ12879 1464 aa18.46■□□□□ 0.54
TPM3-202ENST00000302206 HRCP23327 699 aa18.44■□□□□ 0.54
TPM3-202ENST00000302206 ERCC6L2Q5T890 1561 aa18.43■□□□□ 0.54
TPM3-202ENST00000302206 FMN1Q68DA7 1419 aa18.43■□□□□ 0.54
TPM3-202ENST00000302206 FYCO1Q9BQS8 1478 aa18.43■□□□□ 0.54
TPM3-202ENST00000302206 FHOD3Q2V2M9 1422 aa18.42■□□□□ 0.54
TPM3-202ENST00000302206 KIAA0586Q9BVV6 1533 aa18.42■□□□□ 0.54
TPM3-202ENST00000302206 KIF13AQ9H1H9 1805 aa18.42■□□□□ 0.54
TPM3-202ENST00000302206 CASKIN1Q8WXD9 1431 aa18.41■□□□□ 0.54
TPM3-202ENST00000302206 UGGT2Q9NYU1 1516 aa18.41■□□□□ 0.54
TPM3-202ENST00000302206 TIAM1Q13009 1591 aa18.41■□□□□ 0.54
TPM3-202ENST00000302206 PCF11O94913 1555 aaKnown RBP18.4■□□□□ 0.54
TPM3-202ENST00000302206 PLPPR3Q6T4P5 718 aa18.4■□□□□ 0.54
TPM3-202ENST00000302206 CEP170Q5SW79 1584 aa18.38■□□□□ 0.53
TPM3-202ENST00000302206 CFAP43Q8NDM7 1665 aa18.38■□□□□ 0.53
TPM3-202ENST00000302206 NUP160Q12769 1436 aa18.34■□□□□ 0.53
TPM3-202ENST00000302206 TTBK1Q5TCY1 1321 aaPredicted RBP18.34■□□□□ 0.53
TPM3-202ENST00000302206 P3H3Q8IVL6 736 aa18.34■□□□□ 0.53
TPM3-202ENST00000302206 KANK4Q5T7N3 995 aaPredicted RBP18.33■□□□□ 0.52
TPM3-202ENST00000302206 SHROOM2Q13796 1616 aa18.32■□□□□ 0.52
TPM3-202ENST00000302206 LRRC9Q6ZRR7 1453 aa18.31■□□□□ 0.52
TPM3-202ENST00000302206 KIAA0556O60303 1618 aa18.27■□□□□ 0.52
TPM3-202ENST00000302206 RRBP1Q9P2E9 1410 aaKnown RBP18.27■□□□□ 0.52
TPM3-202ENST00000302206 DISP1Q96F81 1524 aa18.26■□□□□ 0.51
TPM3-202ENST00000302206 ZEB1P37275 1124 aaPredicted RBP18.24■□□□□ 0.51
TPM3-202ENST00000302206 CCDC18Q5T9S5 1454 aa18.23■□□□□ 0.51
TPM3-202ENST00000302206 HECW1Q76N89 1606 aa18.23■□□□□ 0.51
TPM3-202ENST00000302206 FAM69CQ0P6D2 419 aa18.22■□□□□ 0.51
TPM3-202ENST00000302206 ILDR1Q86SU0 546 aaPredicted RBP18.22■□□□□ 0.51
TPM3-202ENST00000302206 ABCC10Q5T3U5 1492 aa18.21■□□□□ 0.51
TPM3-202ENST00000302206 SENP3Q9H4L4 574 aaPredicted RBP18.21■□□□□ 0.51
TPM3-202ENST00000302206 NPM1P06748 294 aaKnown RBP eCLIP18.2■□□□□ 0.5
TPM3-202ENST00000302206 KDM6BO15054 1643 aa18.2■□□□□ 0.5
TPM3-202ENST00000302206 PRG4Q92954 1404 aaPredicted RBP18.19■□□□□ 0.5
TPM3-202ENST00000302206 LRRIQ1Q96JM4 1722 aa18.19■□□□□ 0.5
TPM3-202ENST00000302206 CARMIL2Q6F5E8 1435 aa18.17■□□□□ 0.5
TPM3-202ENST00000302206 KDM4FA0A1W2PPD8 638 aa18.17■□□□□ 0.5
TPM3-202ENST00000302206 DIP2BQ9P265 1576 aa18.17■□□□□ 0.5
TPM3-202ENST00000302206 CCNB3Q8WWL7 1395 aa18.17■□□□□ 0.5
TPM3-202ENST00000302206 ATP1B4Q9UN42 357 aaPredicted RBP18.16■□□□□ 0.5
TPM3-202ENST00000302206 MAPKBP1O60336 1514 aa18.16■□□□□ 0.5
TPM3-202ENST00000302206 EHBP1L1Q8N3D4 1523 aa18.15■□□□□ 0.5
TPM3-202ENST00000302206 JPH4Q96JJ6 628 aa18.15■□□□□ 0.5
TPM3-202ENST00000302206 EPRSP07814 1512 aaKnown RBP18.13■□□□□ 0.49
TPM3-202ENST00000302206 RAPGEF6Q8TEU7 1601 aa18.12■□□□□ 0.49
TPM3-202ENST00000302206 TSPOAP1O95153 1857 aa18.12■□□□□ 0.49
TPM3-202ENST00000302206 MTUS2Q5JR59 1369 aa18.11■□□□□ 0.49
TPM3-202ENST00000302206 PHLDB1Q86UU1 1377 aa18.11■□□□□ 0.49
TPM3-202ENST00000302206 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.11■□□□□ 0.491e-7■■□□□ 12.2
TPM3-202ENST00000302206 SUPT6HQ7KZ85 1726 aaKnown RBP18.09■□□□□ 0.49
TPM3-202ENST00000302206 HNRNPUL2Q1KMD3 747 aaKnown RBP18.07■□□□□ 0.48
TPM3-202ENST00000302206 ADCY10Q96PN6 1610 aa18.07■□□□□ 0.48
TPM3-202ENST00000302206 NUP153P49790 1475 aaKnown RBP18.06■□□□□ 0.48
TPM3-202ENST00000302206 NCOA2Q15596 1464 aa18.04■□□□□ 0.48
TPM3-202ENST00000302206 MAGI3Q5TCQ9 1506 aa18.03■□□□□ 0.48
TPM3-202ENST00000302206 CCER1Q8TC90 406 aaPredicted RBP18.03■□□□□ 0.48
TPM3-202ENST00000302206 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.02■□□□□ 0.48
TPM3-202ENST00000302206 ABCA8O94911 1581 aa18.02■□□□□ 0.48
TPM3-202ENST00000302206 CDK13Q14004 1512 aaKnown RBP18.02■□□□□ 0.47
TPM3-202ENST00000302206 FGD6Q6ZV73 1430 aa18.01■□□□□ 0.47
TPM3-202ENST00000302206 MYOM3Q5VTT5 1437 aa18■□□□□ 0.47
TPM3-202ENST00000302206 PLB1Q6P1J6 1458 aa17.98■□□□□ 0.47
TPM3-202ENST00000302206 CDK11AQ9UQ88 783 aaPredicted RBP17.97■□□□□ 0.47
TPM3-202ENST00000302206 PTPRGP23470 1445 aa17.94■□□□□ 0.46
TPM3-202ENST00000302206 ADGRL1O94910 1474 aa17.94■□□□□ 0.46
TPM3-202ENST00000302206 MIA2Q96PC5 1412 aa17.93■□□□□ 0.46
TPM3-202ENST00000302206 TCOF1Q13428 1488 aaKnown RBP17.93■□□□□ 0.46
TPM3-202ENST00000302206 TROQ12816 1431 aaPredicted RBP17.92■□□□□ 0.46
TPM3-202ENST00000302206 FAM50AQ14320 339 aaKnown RBP17.91■□□□□ 0.46
TPM3-202ENST00000302206 PTPN23Q9H3S7 1636 aa17.9■□□□□ 0.46
TPM3-202ENST00000302206 CLSPNQ9HAW4 1339 aa17.9■□□□□ 0.46
TPM3-202ENST00000302206 HECW2Q9P2P5 1572 aa17.89■□□□□ 0.45
TPM3-202ENST00000302206 SETD5Q9C0A6 1442 aa17.87■□□□□ 0.45
TPM3-202ENST00000302206 ATP10BO94823 1461 aa17.87■□□□□ 0.45
TPM3-202ENST00000302206 PPRC1Q5VV67 1664 aaKnown RBP17.87■□□□□ 0.45
TPM3-202ENST00000302206 UACAQ9BZF9 1416 aa17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms